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Source database (GenBank or RefSeq) File type

ASM326012v1

Organism name:: Lujinxingia litoralis (d-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: B210
BioSample:: SAMN09269811
BioProject:: PRJNA473271
Submitter:: Shandong University at Weihai
Date:: 2018/06/22
Assembly type:: na
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_003260125.1 (latest)
RefSeq assembly accession:: GCF_003260125.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: QHKO01
Assembly method:: SOAPdenovo v. 2.04
Expected final version:: yes
Genome coverage:: 389.73x
Sequencing technology:: Illumina HiSeq

IDs: 1771621 [UID] 6715678 [GenBank] 6725858 [RefSeq]

See Genome Information for Lujinxingia litoralis

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_003260125.1	=	GCF_003260125.1	ASM326012v1	Scaffold	Latest GenBank, Latest RefSeq

Comment

Bacteria and source DNA available from Zong-Jun Du.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::05/30/2018 15:07:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,906
CDS (total)::3,842
Genes (coding)::3,788
CDS (coding)::3,788
Genes (RNA)::64
rRNAs::3, 1, 3 (5S, 16S, 23S)
complete rRNAs::3 (5S)
partial rRNAs::1, 3 (16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::54
Pseudo Genes (ambiguous residues)::4 of 54
Pseudo Genes (frameshifted)::5 of 54
Pseudo Genes (incomplete)::47 of 54
Pseudo Genes (internal stop)::1 of 54
Pseudo Genes (multiple problems)::3 of 54
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,008,384
Total ungapped length	5,008,013
Gaps between scaffolds	0
Number of scaffolds	30
Scaffold N50	491,720
Scaffold L50	4
Number of contigs	38
Contig N50	372,832
Contig L50	4
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	30

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	83.75	36.51	34.31

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ASM326012v1

See Genome Information for Lujinxingia litoralis

Pathogen Detection Resources

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