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ASM325831v1

Organism name:
Bradymonas sediminis (d-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FA350
BioSample:
SAMN09396997
BioProject:
PRJNA475614
Submitter:
Shandong University at Weihai
Date:
2018/06/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003258315.1 (latest)
RefSeq assembly accession:
GCF_003258315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2.04; Celera Assembler v. 8.0
Expected final version:
yes
Genome coverage:
668.93x
Sequencing technology:
Illumina HiSeq; PacBio

IDs: 1768991 [UID] 6697178 [GenBank] 6707298 [RefSeq]

See Genome Information for Bradymonas sediminis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Zong-Jun Du.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_003258315.1-RS_2024_03_28
Annotation Date::03/28/2024 03:40:54
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,800
CDSs (total)::3,728
Genes (coding)::3,698
CDSs (with protein)::3,698
Genes (RNA)::72
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::54
ncRNAs::3
Pseudo Genes (total)::30
CDSs (without protein)::30
Pseudo Genes (ambiguous residues)::0 of 30
Pseudo Genes (frameshifted)::1 of 30
Pseudo Genes (incomplete)::29 of 30
Pseudo Genes (internal stop)::0 of 30
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,045,683
Total ungapped length5,045,683
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003258325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP030032.1=NZ_CP030032.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,045,683

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bradymonas sediminisBradymonas sediminis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004362595.1Bradymonas sediministype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004362595.1Bradymonas sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.1699.97
Best-match type99.9999.1699.97

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna