U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM211700v1

Organism name:
Sedimentisphaera salicampi (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ST-PulAB-D4
BioSample:
SAMN06284595
BioProject:
PRJNA369381
Submitter:
Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures
Date:
2017/05/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002117005.1 (latest)
RefSeq assembly accession:
GCF_002117005.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP SMRTPortal v. April-2017
Genome coverage:
134x
Sequencing technology:
Illumina MiSeq; PacBio

IDs: 1084991 [UID] 4426878 [GenBank] 4443488 [RefSeq]

See Genome Information for Sedimentisphaera salicampi

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 01:58:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,434
CDSs (total)::2,377
Genes (coding)::2,366
CDSs (with protein)::2,366
Genes (RNA)::57
rRNAs::2, 3, 2 (5S, 16S, 23S)
complete rRNAs::2, 3, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::0 of 11
Pseudo Genes (incomplete)::11 of 11
Pseudo Genes (internal stop)::0 of 11
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,192,293
Total ungapped length3,192,293
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002117015.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP021023.1=NZ_CP021023.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,192,293

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sedimentisphaera salicampiSedimentisphaera salicampi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001997385.1Sedimentisphaera cyanobacteriorumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.2670.2375.95

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected