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ASM197566v1

Organism name:
Polaribacter reichenbachii (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 6Alg 8T
BioSample:
SAMN06240835
BioProject:
PRJNA362672
Submitter:
Kyung Hee University
Date:
2017/01/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001975665.1 (latest)
RefSeq assembly accession:
GCF_001975665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
RS HGAP Assembly v. 3.0
Genome coverage:
390.0x
Sequencing technology:
PacBio

IDs: 965241 [UID] 4018408 [GenBank] 4057188 [RefSeq]

See Genome Information for Polaribacter reichenbachii

There are 5 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/05/2024 00:56:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,528
CDSs (total)::3,475
Genes (coding)::3,465
CDSs (with protein)::3,465
Genes (RNA)::53
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::41
ncRNAs::3
Pseudo Genes (total)::10
CDSs (without protein)::10
Pseudo Genes (ambiguous residues)::0 of 10
Pseudo Genes (frameshifted)::3 of 10
Pseudo Genes (incomplete)::5 of 10
Pseudo Genes (internal stop)::4 of 10
Pseudo Genes (multiple problems)::2 of 10
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,125,014
Total ungapped length4,125,014
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001975675.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP019419.1=NZ_CP019419.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,125,014

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Polaribacter reichenbachiiPolaribacter reichenbachii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_038024055.1Polaribacter reichenbachiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_038024055.1Polaribacter reichenbachiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna