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ASM195395v1

Organism name:
Prevotella intermedia ATCC 25611 = DSM 20706 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 25611
BioSample:
SAMN04529094
BioProject:
PRJNA313956
Submitter:
The Forsyth Institute
Date:
2017/01/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001953955.1 (latest)
RefSeq assembly accession:
GCF_001953955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. June 2016; HGAP v. 2.3
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio

IDs: 953161 [UID] 3987528 [GenBank] 4006538 [RefSeq]

See Genome Information for Prevotella intermedia

There are 51 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Christopher D Johnston.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/21/2023 01:52:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,236
CDSs (total)::2,167
Genes (coding)::2,106
CDSs (with protein)::2,106
Genes (RNA)::69
rRNAs::5, 4, 4 (5S, 16S, 23S)
complete rRNAs::5, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::3
Pseudo Genes (total)::61
CDSs (without protein)::61
Pseudo Genes (ambiguous residues)::0 of 61
Pseudo Genes (frameshifted)::33 of 61
Pseudo Genes (incomplete)::32 of 61
Pseudo Genes (internal stop)::9 of 61
Pseudo Genes (multiple problems)::10 of 61
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,674,170
Total ungapped length2,674,170
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001953965.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome ICP019300.1=NZ_CP019300.1
Chromosome IICP019301.1=NZ_CP019301.1

Assembly statistics

MoleculeTotal
Length
All2,674,170
Chromosome I1,965,935
Chromosome II708,235

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Prevotella intermedia ATCC 25611 = DSM 20706Prevotella intermedia

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900455005.1Prevotella intermediatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900455005.1Prevotella intermediatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9997.49100.00
Best-match type99.9997.49100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna