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ASM131499v1

Organism name:
Bacteroides ovatus (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 8483
BioSample:
SAMN03852683
BioProject:
PRJNA289334
Submitter:
Washington University in St. Louis
Date:
2015/10/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_001314995.1 (latest)
RefSeq assembly accession:
GCF_001314995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP 2.0 and Celera v. AUG-2014
Genome coverage:
350X
Sequencing technology:
PacBio; Illumina MiSeq

IDs: 502821 [UID] 2393038 [GenBank] 2815248 [RefSeq]

See Genome Information for Bacteroides ovatus

There are 705 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_001314995.1-RS_2024_03_28
Annotation Date::03/28/2024 02:19:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,916
CDSs (total)::4,823
Genes (coding)::4,761
CDSs (with protein)::4,761
Genes (RNA)::93
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::76
ncRNAs::2
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::14 of 62
Pseudo Genes (incomplete)::43 of 62
Pseudo Genes (internal stop)::14 of 62
Pseudo Genes (multiple problems)::9 of 62
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,472,489
Total ungapped length6,472,489
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001315005.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012938.1=NZ_CP012938.1

Assembly statistics

MoleculeTotal
Length
Chromosome 6,472,489

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides ovatusBacteroides ovatus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_025146775.1Bacteroides ovatussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025146775.1Bacteroides ovatussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.00100.00
Best-match type99.99100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna