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ASM97310v1

Organism name:
Zobellia galactanivorans (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DsiJT
BioSample:
SAMEA3315864
BioProject:
PRJEB8976
Submitter:
Genoscope CEA
Date:
2011/07/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000973105.1 (latest)
RefSeq assembly accession:
GCF_000973105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 322571 [UID] 1728598 [GenBank] 1728678 [RefSeq]

See Genome Information for Zobellia galactanivorans

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/20/2023 02:52:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,490
CDSs (total)::4,440
Genes (coding)::4,426
CDSs (with protein)::4,426
Genes (RNA)::50
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::14
CDSs (without protein)::14
Pseudo Genes (ambiguous residues)::0 of 14
Pseudo Genes (frameshifted)::8 of 14
Pseudo Genes (incomplete)::9 of 14
Pseudo Genes (internal stop)::4 of 14
Pseudo Genes (multiple problems)::5 of 14
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,521,712
Total ungapped length5,521,712
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000973115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FP476056.1=NC_015844.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,521,712

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Zobellia galactanivoransZobellia galactanivorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900156625.1Zobellia uliginosatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.8683.3186.74

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected