History (Show revision history)

Comment

This project was carried out by
*Max Planck Institute for Molecular Genetics, Berlin, Germany; *Max Planck Institute for Marine Microbiology, Bremen, Germany; in the fremework of the REGX-project, http://www.regx.de -------------- Genome Center
 Center: Max Planck Institute for Molecular Genetics 
 ... Center code: MPIMG
-------------- Summary Statistics
 Sequencing vector: pUC19; 100% of reads
 Chemistry: Dye-terminator Big Dye; 100% of reads 
 Assembly program: Phrap; version 0.990329
 Consensus quality: 7142841 bases at least Q40 
 Consensus quality: 7145138 bases at least Q30 
 Consensus quality: 7145484 bases at least Q20 
 Quality coverage: 8.03
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This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistry, or coveredby high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; allregions were covered by at least one plasmid Sequence; assembly was additionally confirmed by long range pcr and cosmid end sequences.
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See http://www.micro-genomes.mpg.de/pirellula/ for more information including minimal tiling path from a set of 220 cosmids out of 908. See the misc_feature tag below for the boundaries of the MTP cosmids. -------------- Annotation
 Center: Max Planck Institute for Marine Microbiology 
 Celsiusstrasse 1, D-28359 Bremen, Germany. 
 Center Code: MPIMM
 Email: fog@mpi-bremen.de
 Phone: +49 (0)421 2028 938 Fax: +49 (0)421 2028 580 --------------
Three different programs (Glimmer, Critica and Orpheus) were used for ORF-prediction. A nonredundant list of ORFs was generated by suitable parsing of the results.
Automated annotation was done with the software package Pedant Pro (http://www.biomax.de). All ORF predictions and annotations were manually corrected by considering all results of the different tools applied. See http://www.regx.de for more information and access to supplementary information.
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The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/08/2023 01:49:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,241
CDSs (total)::5,152
Genes (coding)::5,124
CDSs (with protein)::5,124
Genes (RNA)::89
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::83
ncRNAs::3
Pseudo Genes (total)::28
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::0 of 28
Pseudo Genes (frameshifted)::4 of 28
Pseudo Genes (incomplete)::23 of 28
Pseudo Genes (internal stop)::2 of 28
Pseudo Genes (multiple problems)::1 of 28
##Genome-Annotation-Data-END##

Global statistics