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IDs: 276128 [UID] 247378 [GenBank] 276128 [RefSeq]
URL -- http://www.jgi.doe.gov JGI Project ID: 4087657 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done ... by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Name::GCF_000190595.1-RS_2024_04_26Annotation Date::04/26/2024 00:48:04Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.7Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::3,343CDSs (total)::3,287Genes (coding)::3,277CDSs (with protein)::3,277Genes (RNA)::56rRNAs::4, 4, 4 (5S, 16S, 23S)complete rRNAs::4, 4, 4 (5S, 16S, 23S)tRNAs::40ncRNAs::4Pseudo Genes (total)::10CDSs (without protein)::10Pseudo Genes (ambiguous residues)::0 of 10Pseudo Genes (frameshifted)::3 of 10Pseudo Genes (incomplete)::7 of 10Pseudo Genes (internal stop)::3 of 10Pseudo Genes (multiple problems)::3 of 10##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Cellulophaga lytica Cy l20, DSM 7489collection_date::1969lat_lon::10.131928 -83.518524depth::Missingalt_elev::Missingcountry::Costa Ricaenvironment::Mudnum_replicons::1ref_biomaterial::DSM 7489, ATCC 23178, IAM 14306biotic_relationship::Free livingtrophic_level::Chemoheterotrophrel_to_oxygen::Aerobeisol_growth_condt::10425785sequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi04010Type Strain::YesFunding Program::DOE-GEBA 2009Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::Beach mud; Limon, Costa RicaIsolation Comments::isolated by R.A. LewinCell Shape::Rod-shapedMotility::MotileTemperature Range::MesophilepH::7.5Gram Staining::Gram-##MIGS-Data-END##
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