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IDs: 250418 [UID] 247678 [GenBank] 250418 [RefSeq]
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/ URL -- http://www.jgi.doe.gov JGI Project ID: 4089467 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and ... Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376) more
##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeqAnnotation Date::10/08/2023 01:17:18Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)Annotation Method::Best-placed reference protein set; GeneMarkS-2+Annotation Software revision::6.6Features Annotated::Gene; CDS; rRNA; tRNA; ncRNAGenes (total)::4,686CDSs (total)::4,632Genes (coding)::4,599CDSs (with protein)::4,599Genes (RNA)::54rRNAs::2, 2, 2 (5S, 16S, 23S)complete rRNAs::2, 2, 2 (5S, 16S, 23S)tRNAs::46ncRNAs::2Pseudo Genes (total)::33CDSs (without protein)::33Pseudo Genes (ambiguous residues)::0 of 33Pseudo Genes (frameshifted)::19 of 33Pseudo Genes (incomplete)::12 of 33Pseudo Genes (internal stop)::3 of 33Pseudo Genes (multiple problems)::1 of 33CRISPR Arrays::2##Genome-Annotation-Data-END##
##MIGS-Data-START##investigation_type::bacteria_archaeaproject_name::Planctomyces brasiliensis IFAM 1448, DSM 5305collection_date::1990lat_lon::-28.210 -51.526depth::Missingalt_elev::Missingcountry::Brazilenvironment::Fresh water, Marinenum_replicons::1ref_biomaterial::ATCC 49424, DSM 5305, JCM 21570biotic_relationship::Free livingtrophic_level::Missingrel_to_oxygen::Aerobeisol_growth_condt::Missingsequencing_meth::WGSassembly::Newbler v. 2.3 (pre-release)finishing_strategy::FinishedGOLD Stamp ID::Gi06613Type Strain::YesFunding Program::DOE-GEBA 2009Gene Calling Method::Prodigal 1.4, GenePRIMPIsolation Site::Water from salt pit, Lagoa Vermelha, BrazilIsolation Comments::isolated by H SchlesnerCell Shape::Sphere-shapedMotility::MotileTemperature Range::MesophileTemperature Optimum::30CCSalinity::HalotolerantGram Staining::Gram-Diseases::None##MIGS-Data-END##
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