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ASM1050v1

Organism name:
Porphyromonas gingivalis ATCC 33277 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 33277
BioSample:
SAMD00060922
BioProject:
PRJDA19051
Submitter:
Kitasato University
Date:
2008/05/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000010505.1 (latest)
RefSeq assembly accession:
GCF_000010505.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31988 [UID] 11308 [GenBank] 31988 [RefSeq]

See Genome Information for Porphyromonas gingivalis

There are 112 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
This work was done in collaboration with Mariko Naito, Naoya Ohara, Mikio Shoji, Hideharu Yukitake, and Koji Nakayama (Nagasaki Univ.), ... Hideki Hirakawa and Satoru Kuhara (Kyushu Univ.), Keisuke Nakayama and Tetsuya Hayashi (Miyazaki Univ.), and Fuminobu Yoshimura (Aichi Gakuin Univ.).  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/24/2023 09:27:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,065
CDSs (total)::1,998
Genes (coding)::1,921
CDSs (with protein)::1,921
Genes (RNA)::67
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::53
ncRNAs::2
Pseudo Genes (total)::77
CDSs (without protein)::77
Pseudo Genes (ambiguous residues)::0 of 77
Pseudo Genes (frameshifted)::22 of 77
Pseudo Genes (incomplete)::59 of 77
Pseudo Genes (internal stop)::7 of 77
Pseudo Genes (multiple problems)::10 of 77
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,354,886
Total ungapped length2,354,886
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000010515.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP009380.1=NC_010729.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,354,886

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Porphyromonas gingivalis ATCC 33277Porphyromonas gingivalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002892575.1Porphyromonas gingivalis ATCC 33277type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002892575.1Porphyromonas gingivalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.5498.50
Best-match type99.9999.5498.50

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna