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ASM2677025v1

Organism name:
Brassica napus (rape)
Infraspecific name:
Cultivar: GH06
BioSample:
SAMN22417787
BioProject:
PRJNA770894
Submitter:
Southwest University
Date:
2022/12/13
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_026770255.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAJVKP01
Assembly method:
flye v. 2.5
Expected final version:
yes
Genome coverage:
117.0x
Sequencing technology:
PacBio Sequel

IDs: 14842561 [UID] 38403358 [GenBank]

See Genome Information for Brassica napus

Pathogen Detection Resources

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length845,370,192
Total ungapped length844,132,391
Gaps between scaffolds0
Number of scaffolds1,892
Scaffold N5047,787,757
Scaffold L508
Number of contigs6,833
Contig N502,765,109
Contig L5081
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)1,892

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_026770525.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome A1CM049141.1n/an/a0
Chromosome A2CM049142.1n/an/a0
Chromosome A3CM049143.1n/an/a0
Chromosome A4CM049144.1n/an/a0
Chromosome A5CM049145.1n/an/a0
Chromosome A6CM049146.1n/an/a0
Chromosome A7CM049147.1n/an/a0
Chromosome A8CM049148.1n/an/a0
Chromosome A9CM049149.1n/an/a0
Chromosome A10CM049150.1n/an/a0
Chromosome C1CM049151.1n/an/a0
Chromosome C2CM049152.1n/an/a0
Chromosome C3CM049153.1n/an/a0
Chromosome C4CM049154.1n/an/a0
Chromosome C5CM049155.1n/an/a0
Chromosome C6CM049156.1n/an/a0
Chromosome C7CM049157.1n/an/a0
Chromosome C8CM049158.1n/an/a0
Chromosome C9CM049159.1n/an/a0
unplacedn/an/an/a1,873

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All845,370,1921,892844,132,39147,787,7574,9410
Chromosome A129,205,692129,146,24429,205,6922390
Chromosome A233,077,142133,048,61833,077,142960
Chromosome A337,417,207137,399,77137,417,207520
Chromosome A422,113,158122,104,35822,113,158320
Chromosome A524,922,142124,907,59324,922,142590
Chromosome A629,822,941129,799,47829,822,941830
Chromosome A727,068,954127,055,08027,068,954610
Chromosome A823,155,847123,150,02723,155,847220
Chromosome A947,787,757147,733,50447,787,7571660
Chromosome A1022,116,513122,089,81122,116,5131590
Chromosome C142,688,810142,498,93342,688,8101,8150
Chromosome C251,306,662151,265,37651,306,6622350
Chromosome C373,870,175173,832,89473,870,1751610
Chromosome C463,593,728163,519,72363,593,7281530
Chromosome C555,547,531155,500,83955,547,5311180
Chromosome C647,332,145147,308,42147,332,145910
Chromosome C761,312,602161,220,54861,312,6026820
Chromosome C850,234,473150,197,11450,234,4731070
Chromosome C953,234,548153,005,88153,234,5481690
unplaced49,562,1651,87349,348,17897,5544410