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Source database (GenBank or RefSeq) File type

AB3v2.0

Organism name:: Danio rerio (zebrafish)
Infraspecific name:: Strain: AB3
BioSample:: SAMN08998291
BioProject:: PRJNA454111
Submitter:: University of Chicago
Date:: 2022/10/05
Assembly level:: Scaffold
Genome representation:: full
GenBank assembly accession:: GCA_025582595.1 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: JALCZT01
Assembly method:: Discovar de novo v. build 52488
Expected final version:: yes
Genome coverage:: 60.0x
Sequencing technology:: Illumina HiSeq

IDs: 14063211 [UID] 36516008 [GenBank]

See Genome Information for Danio rerio

Pathogen Detection Resources

There are 18 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Total sequence length	1,498,279,873
Total ungapped length	1,497,181,973
Gaps between scaffolds	0
Number of scaffolds	202,662
Scaffold N50	16,513
Scaffold L50	20,105
Number of contigs	213,641
Contig N50	13,516
Contig L50	27,492
Total number of chromosomes and plasmids	1
Number of component sequences (WGS or clone)	202,662

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Assembly Information

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AB3v2.0 - Genome - Assembly - NCBI
AB3v2.0 - Genome - Assembly - NCBI

Assembly
hypothetical protein MPER_10293 [Moniliophthora perniciosa FA553]
hypothetical protein MPER_10293 [Moniliophthora perniciosa FA553]
gi|238584013|ref|XP_002390425.1||gn _WGS:ABRE|MPER_10293

Protein
dynein axonemal heavy chain 5 isoform X2 [Homo sapiens]
dynein axonemal heavy chain 5 isoform X2 [Homo sapiens]
gi|2462601185|ref|XP_054207914.1|

Protein
Dpy30 dpy-30, histone methyltransferase complex regulatory subunit [Mus musculus...
Dpy30 dpy-30, histone methyltransferase complex regulatory subunit [Mus musculus]
Gene ID:66310

Gene
PMC Links for GEO DataSets (Select 4849) (1)
PMC

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Assembly Definition
Assembly Statistics

Global assembly definition

Download the full sequence report

Click on the table row to see sequence details in the table to the right

Assembly Unit Name
Primary Assembly
non-nuclear

The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

Primary Assembly
non-nuclear

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
unplaced	1,498,263,277	202,661	1,497,165,377	16,512	10,979	0

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
Mitochondrion MT	16,596	1	16,596	16,596	0	0