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ADIG00000000.1 groundwater metagenome

Master
# of Contigs: 6,037
# of Proteins: 0
Total length: 9,512,075 bp
BioProject: PRJNA39533
BioSample: SAMN02954299
Keywords: WGS
Organism: groundwater metagenomeshow lineagehide lineage
Biosource:
/collection_date = 07-Jan-2005
/country = USA: Oak Ridge, TN
/environmental_sample
/isolation_source = FW106 well in Area 3 of the Oak Ridge Field Research Center (FRC) near the Y-12 National Security Complex
/lat_lon = 36.11569 N 84.248657 W
/metagenomic
/mol_type = genomic
WGS: ADIG01000001:ADIG01006037
Reference:
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community : ISME J 4 (5), 660-672 (2010) – show 14 authorshide authors
Hemme,C.L., Deng,Y., Gentry,T.J., Fields,M.W., Wu,L., Barua,S., Barry,K., Tringe,S.G., Watson,D.B., He,Z., Hazen,T.C., Tiedje,J.M., Rubin,E.M., Zhou,J.
Submission:
Submitted (23-FEB-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA – show 21 authorshide authors
Lucas,S., Copeland,A., Lapidus,A., Cheng,J.-F., Bruce,D., Pitluck,S., Hemme,C.L., Deng,Y., Gentry,T.J., Fields,M.W., Wu,L., Barua,S., Barry,K., Tringe,S.G., Watson,D.B., He,Z., Hazen,T.C., Tiedje,J.M., Rubin,E.M., Zhou,J., US DOE Joint Genome Institute

The groundwater metagenome whole genome shotgun (WGS) project has the project accession ADIG00000000. This version of the project (01) has the accession number ADIG01000000, and consists of sequences ADIG01000001-ADIG01006037.

URL: www.jgi.doe.gov JGI Project ID:4000601 DNA available from Christopher L. Hemme (hemmecl@ou.edu) Contact:Christopher Hemme (hemmecl@ou.edu) Susannah Tringe (SGTringe@lbl.gov) The FW106 well from which groundwater was obtained is located in Area 3 of the Oak Ridge Field Research Center (FRC) near the Y-12 National Security Complex in Oak Ridge, TN (http://www.esd.ornl.gov/orifrc/). This site lies in the path of a highly contaminated groundwater plume originating from the original S-3 Waste Disposal Ponds. Because of the proximity of the well to the S-3 ponds, uranium contamination levels are among the highest reported in the world. Contaminants present in FW106 groundwater include high concentrations of nitric acid (pH 3.7), radionuclides (technetium-99 and uranium) and volatile organics. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).

##Metadata-START##
Organism Display Name : Freshwater microbial community from Contaminated Groundwater
GOLD Stamp ID : Gm00007
Isolation Site : Natural and Accelerated Bioremediation Research (NABIR) Field Research Center (FRC), Well FW-106
Collection Date : 07-JAN-05
Latitude : 36.11569
Longitude : -84.248657
pH : 3.7
Diseases : None
Habitat : Fresh water, Groundwater
Phenotypes : Acidophile
Assembler : Paracel Genome Assembler
Assembly Version : V-06Jun07
##Metadata-END##
Contigs
Download
GenBank:ADIG01.1.gbff.gz 4.4 Mb
FASTA:ADIG01.1.fsa_nt.gz 2.9 Mb
ASN.1:ADIG01.1.bbs.gz 2.5 Mb
History
Minor Version Create Date
1 02/24/2010
5 11/11/2017
6 11/18/2017