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Conserved domains on  [gi|1907155716|ref|XP_036019949|]
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transmembrane protein 39B isoform X1 [Mus musculus]

Protein Classification

Tmp39 domain-containing protein( domain architecture ID 10563182)

Tmp39 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
3-363 8.23e-180

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


:

Pssm-ID: 463038  Cd Length: 426  Bit Score: 505.80  E-value: 8.23e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716   3 NFHLIDFNLLMVTAIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYP 82
Cdd:pfam10271  69 NFHLIDPYLLTFITILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYP 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716  83 FGMYIPFLQLNYDLRKTNLFTHMASMGPREAVSGLAR-SRDYFLTLRETWKQHtrqlYGPEAMPTHACCLSPSLIRNEVE 161
Cdd:pfam10271 149 VGVYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLRkSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 162 FLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGC 241
Cdd:pfam10271 225 YLKLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGC 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 242 WQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSNPLRILNILLLLEGAVIVYQ 321
Cdd:pfam10271 305 WQKVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQ 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1907155716 322 LYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 363
Cdd:pfam10271 385 LYSLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
3-363 8.23e-180

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 505.80  E-value: 8.23e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716   3 NFHLIDFNLLMVTAIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYP 82
Cdd:pfam10271  69 NFHLIDPYLLTFITILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYP 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716  83 FGMYIPFLQLNYDLRKTNLFTHMASMGPREAVSGLAR-SRDYFLTLRETWKQHtrqlYGPEAMPTHACCLSPSLIRNEVE 161
Cdd:pfam10271 149 VGVYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLRkSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 162 FLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGC 241
Cdd:pfam10271 225 YLKLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGC 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 242 WQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSNPLRILNILLLLEGAVIVYQ 321
Cdd:pfam10271 305 WQKVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQ 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1907155716 322 LYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 363
Cdd:pfam10271 385 LYSLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Name Accession Description Interval E-value
Tmp39 pfam10271
Putative transmembrane protein; This is a family of conserved proteins found from worms to ...
3-363 8.23e-180

Putative transmembrane protein; This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.


Pssm-ID: 463038  Cd Length: 426  Bit Score: 505.80  E-value: 8.23e-180
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716   3 NFHLIDFNLLMVTAIVLGRRFIGSIVKEASQRGKVSLFRSILLFLTRFTVLTATGWSLCRSLIHLFRTYSFLNLLFLCYP 82
Cdd:pfam10271  69 NFHLIDPYLLTFITILLARRLIWAIVKEVSQAGKASFSQSVILLTVRYAVLTLVGWSLCRTAILLFRTHSVLNLLFLSYP 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716  83 FGMYIPFLQLNYDLRKTNLFTHMASMGPREAVSGLAR-SRDYFLTLRETWKQHtrqlYGPEAMPTHACCLSPSLIRNEVE 161
Cdd:pfam10271 149 VGVYLPIFGFQLDFRPTSPLEIIGWRKTRFCVGPLLRkSRDFLTLLRELLKQH----PSQEPLPTHSCTLSPDLIRSEVE 224
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 162 FLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFVKNTHYYDKRWSCELFLLVSISTSVILMQHLLPASYCDLLHKAAAHLGC 241
Cdd:pfam10271 225 YLKLDFNRRIKQVLFNSLLSAYYVAFVPCCFVKSTQYYDMRWSCQHCIVVWLSAFVLLMVHLLPAKYCDLLHRAAAHLGC 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907155716 242 WQKVDPALCSNVLQHPWTEECMWPQGVLVKHSKNVYKAVGHYNVAIPSDVSHFRFHFFFSNPLRILNILLLLEGAVIVYQ 321
Cdd:pfam10271 305 WQKVDPGPCSNTPQHNWSEETMWPQGVLVKHNKGLYKAVGHYNVAIPSDVSHARFYFLFHKPLRILNILIILEGAVIFYQ 384
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1907155716 322 LYSLMSSEKWHQTISLALILFSNYYAFFKLLRDRLVLGKAYS 363
Cdd:pfam10271 385 LYSLLSSEKWHHTLSLALILFSNYYAFFKLLRDRIVLGKAYS 426
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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