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Conserved domains on  [gi|1907149829|ref|XP_036018903|]
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la-related protein 1B isoform X4 [Mus musculus]

Protein Classification

DM15 domain-containing protein( domain architecture ID 10251559)

DM15 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 119-157 3.98e-12

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


:

Pssm-ID: 128927  Cd Length: 39  Bit Score: 59.31  E-value: 3.98e-12
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907149829  119 HFNWKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 157
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
DM15 super family cl02733
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 78-118 1.12e-07

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


The actual alignment was detected with superfamily member smart00684:

Pssm-ID: 128927  Cd Length: 39  Bit Score: 46.98  E-value: 1.12e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1907149829   78 FTQQLYHRYRRKCLSERKRLGigqSQEMNTLFRFWSFFLRD 118
Cdd:smart00684   2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
 
Name Accession Description Interval E-value
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 119-157 3.98e-12

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 59.31  E-value: 3.98e-12
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907149829  119 HFNWKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 157
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 78-118 1.12e-07

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 46.98  E-value: 1.12e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1907149829   78 FTQQLYHRYRRKCLSERKRLGigqSQEMNTLFRFWSFFLRD 118
Cdd:smart00684   2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
 
Name Accession Description Interval E-value
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 119-157 3.98e-12

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 59.31  E-value: 3.98e-12
                           10        20        30
                   ....*....|....*....|....*....|....*....
gi 1907149829  119 HFNWKMYEEFRQLAWEDAKENYRYGLECLFRFYSYGLEK 157
Cdd:smart00684   1 NFNQNMYEEFRQLCLEDRKSLGRYELNCLYRFWSYGLRK 39
DM15 smart00684
Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown ...
 78-118 1.12e-07

Tandem repeat in fly CG14066 (La related protein), human KIAA0731 and worm R144.7. Unknown function;


Pssm-ID: 128927  Cd Length: 39  Bit Score: 46.98  E-value: 1.12e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 1907149829   78 FTQQLYHRYRRKCLSERKRLGigqSQEMNTLFRFWSFFLRD 118
Cdd:smart00684   2 FNQNMYEEFRQLCLEDRKSLG---RYELNCLYRFWSYGLRK 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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