|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
244-586 |
2.76e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 2.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 244 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQ 323
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELE----ELEAELAELEAELEELR-LELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 324 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAV 403
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 404 RLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEE 483
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 484 SLQQQQQEQEETLKLCRE-----EHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQevkdtVDGQRILEKKGSA 558
Cdd:COG1196 454 LEEEEEALLELLAELLEEaalleAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL-----LAGLRGLAGAVAV 528
|
330 340
....*....|....*....|....*...
gi 1907204921 559 VLKDLKRqlhLERKRADKLQERLQEILT 586
Cdd:COG1196 529 LIGVEAA---YEAALEAALAAALQNIVV 553
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
240-585 |
3.70e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 3.70e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 240 IEELQQRKEAdLKAQlART----QKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSEL 315
Cdd:COG1196 195 LGELERQLEP-LERQ-AEKaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 316 ASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQ 395
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELE-EELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 396 HKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKART---RELENLQHTVEELQAQVHSMDGAKG 472
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEeleEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 473 WFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRIL 552
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
330 340 350
....*....|....*....|....*....|...
gi 1907204921 553 EKKGSAVLKDLKRQLHLERKRADKLQERLQEIL 585
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
190-479 |
4.00e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 4.00e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 190 LKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdLKAQLARTQKLQQELEAAN 269
Cdd:COG1196 232 LKLRELEAELEELEAELE--ELEAELEELEAELAELEAELEEL----RLELEELELELEE-AQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 270 QSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 349
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEE-LEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 350 LLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHE 427
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLeeELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1907204921 428 DKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG-AKGWFERRLK 479
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfLEGVKAALLL 516
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-586 |
7.34e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 7.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 244 QQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQgerlEHAAALRALQDQIQTaktqelnmLREQTSELASELQHRQ 323
Cdd:TIGR02168 220 AELRELELALLVLRLEELREELEELQEELKEAEEELE----ELTAELQELEEKLEE--------LRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 324 AEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAV 403
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 404 RLRHEKeLLGVRARYERELRELHEdKKRQEEELRGQIREEKARtreLENLQHTVEELQAQVhsmdgakgwfERRLKEAEE 483
Cdd:TIGR02168 368 EELESR-LEELEEQLETLRSKVAQ-LELQIASLNNEIERLEAR---LERLEDRRERLQQEI----------EELLKKLEE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 484 SLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVlkdl 563
Cdd:TIGR02168 433 AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV---- 508
|
330 340
....*....|....*....|...
gi 1907204921 564 kRQLHLERKRADKLQERLQEILT 586
Cdd:TIGR02168 509 -KALLKNQSGLSGILGVLSELIS 530
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-580 |
7.65e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.24 E-value: 7.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 235 DSRNKIEELQQR-KEADLKAQLARTQ--KLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAkTQELNMLREQ 311
Cdd:TIGR02169 174 KALEELEEVEENiERLDLIIDEKRQQleRLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI-ERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 312 TSELASELQHRQAEYEELMGQKDDLNSQLQ-----ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKvMLDELA 386
Cdd:TIGR02169 253 LEKLTEEISELEKRLEEIEQLLEELNKKIKdlgeeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-KLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 387 METLQEKSQHKEELGAVRLRHEK---ELLGVRARYERELRELHEdkkrQEEELRGQIREEKARTRELENLQHTVEELQAQ 463
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEE----VDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 464 vhsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHA---AELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQ 540
Cdd:TIGR02169 408 -----------LDRLQEELQRLSEELADLNAAIAGIEAKINeleEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1907204921 541 EvkdtvdgQRILEKKgsavLKDLKRQLHLERKRADKLQER 580
Cdd:TIGR02169 477 E-------YDRVEKE----LSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
188-479 |
5.25e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 5.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 188 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQT----------EKETLFNDSRNKIEELQQRKEAdLKAQLAR 257
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEeleqlrkeleELSRQISALRKDLARLEAEVEQ-LEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 258 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELaselqhrQAEYEELMGQKDDLN 337
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDEL-------RAELTLLNEEAANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 338 SQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET---LQEKSQHKEELGAVRLRHEKELLGV 414
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907204921 415 RA---------RYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhTVEELQAQVHSMDGAKGWFERRLK 479
Cdd:TIGR02168 904 REleskrselrRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLK 975
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
237-584 |
5.62e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 5.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 237 RNKIEELqqrkEADLKAQLARTQKLQQELEAANQSLAELRDQrqgerlehaaaLRALQDQIQTaKTQELNMLREQTSELA 316
Cdd:TIGR02168 676 RREIEEL----EEKIEELEEKIAELEKALAELRKELEELEEE-----------LEQLRKELEE-LSRQISALRKDLARLE 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 317 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMetlqEKSQH 396
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRA----ELTLL 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 397 KEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELrgqireeKARTRELENLQHTVEELQAQVHSMDGAKGWFER 476
Cdd:TIGR02168 816 NEEAANLRER-LESLERRIAATERRLEDLEEQIEELSEDI-------ESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 477 RLKEAEESLQQQQQEqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVkdTVDGQRILEKKG 556
Cdd:TIGR02168 888 ALALLRSELEELSEE--------LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL--SEEYSLTLEEAE 957
|
330 340
....*....|....*....|....*...
gi 1907204921 557 SAVLKDLKRQLHLERkRADKLQERLQEI 584
Cdd:TIGR02168 958 ALENKIEDDEEEARR-RLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
26-584 |
9.62e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 9.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 26 QLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQ-EVEVLLSENEMLQAKLHSQEEDFRLQnsTLMAEFSKLC 104
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEElEAELAELEAELEELRLELEELELELE--EAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 105 SQLEQLELENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERygkeavrpsavgegqgdppgdvlptplapmp 184
Cdd:COG1196 295 AELARLEQDIARLEERR-----RELEERLEELEEELAELEEELEELEEE------------------------------- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 185 LAEVELKWEMEREEKKLLWEQLQGLE--LSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ-----RKEADLKAQLAR 257
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEeaLLEAEAELAEAEEELEELAEELLEALRAAAELAAQleeleEAEEALLERLER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 258 TQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMG 331
Cdd:COG1196 419 LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlaelleEAALLEAALAELLEELAEAAARLLLLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 332 QKDDLNSQLQESLRA-----NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAME--------------TLQE 392
Cdd:COG1196 499 AEADYEGFLEGVKAAlllagLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAaaieylkaakagraTFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 393 KSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDG--A 470
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 471 KGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQR 550
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590
....*....|....*....|....*....|....
gi 1907204921 551 ILEKKGSAVLKDLKRQLHLERKRADKLQERLQEI 584
Cdd:COG1196 739 EELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
248-468 |
2.95e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.70 E-value: 2.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 248 EADLKAQLARTQKLQQELEAANQSLAELRDQR--------QGERLEHAAALRALQDQIQTA-----KTQELNMLREQTSE 314
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIellepireLAERYAAARERLAELEYLRAAlrlwfAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 315 LASELQHRQAEYEELMGQKDDLNSQLQEslransrLLEQLQEI-GQEKEQLTQDLQEARKSAEKRKVMLDELAmetlqek 393
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDE-------LEAQIRGNgGDRLEQLEREIERLERELEERERRRARLE------- 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907204921 394 sQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMD 468
Cdd:COG4913 366 -ALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIP 439
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-564 |
6.19e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.15 E-value: 6.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 28 SDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQL 107
Cdd:PTZ00121 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 108 EQLELENRQLKEGVPGAAGAHVDGELLRLQAEntalQKNMAALQERYGKEAVRpsavgegqgdppgdvlptplapmplAE 187
Cdd:PTZ00121 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAE----EKKKADEAKKKAEEAKK-------------------------AD 1447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 188 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQESfCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEA 267
Cdd:PTZ00121 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE-AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 268 ANQS--------LAELRDQRQGERLEHAAALRALQDQI---QTAKTQELNMLREQTSELASELQHRQAE-----YEELMG 331
Cdd:PTZ00121 1527 AKKAeeakkadeAKKAEEKKKADELKKAEELKKAEEKKkaeEAKKAEEDKNMALRKAEEAKKAEEARIEevmklYEEEKK 1606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 332 QKDDlNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEE-LGAVRLRHEKE 410
Cdd:PTZ00121 1607 MKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDkKKAEEAKKAEE 1685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 411 llgvRARYERELRELHEDKKRQEEELRGQIREEKARTRELENlqhtvEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQ 490
Cdd:PTZ00121 1686 ----DEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK-----AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907204921 491 EQEETLKLCREEHAAELKGKDEELqnVREQLQQAQEERDGHV-KTISNLKQEVKDTVDGQrileKKGSAVLKDLK 564
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAV--IEEELDEEDEKRRMEVdKKIKDIFDNFANIIEGG----KEGNLVINDSK 1825
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
37-450 |
9.55e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 9.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 37 ELSSLRQKVAYLdkefskAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQ 116
Cdd:TIGR02168 678 EIEELEEKIEEL------EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 117 lkegvpgaagahvdgellrLQAENTALQKNMAALQERYGKEAVRPSAVGEGqgdppgdvlptplapmpLAEVELKWEMER 196
Cdd:TIGR02168 752 -------------------LSKELTELEAEIEELEERLEEAEEELAEAEAE-----------------IEELEAQIEQLK 795
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 197 EEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLFNDSRNK---IEELQQRKE------ADLKAQLARTQKLQQELEA 267
Cdd:TIGR02168 796 EELKALREALD--ELRAELTLLNEEAANLRERLESLERRIAATerrLEDLEEQIEelsediESLAAEIEELEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 268 ANQSLAELRDQRQGERLEHAAALRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAN 347
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 348 srlleqLQEIGQEKEQLTQDLQEARKSAEKrkvmldelametLQEKsqhKEELGAVRLRHEKELLGVRARYErELRELHE 427
Cdd:TIGR02168 953 ------LEEAEALENKIEDDEEEARRRLKR------------LENK---IKELGPVNLAAIEEYEELKERYD-FLTAQKE 1010
|
410 420
....*....|....*....|...
gi 1907204921 428 DKKRQEEELRGQIREEKARTREL 450
Cdd:TIGR02168 1011 DLTEAKETLEEAIEEIDREARER 1033
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
193-422 |
2.79e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 2.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 193 EMEREEKKLlwEQLQGL-ELSEKLKKKQESFCRLQTEKETLfndsrnKIEELQQRKEAdLKAQLARtqkLQQELEAANQS 271
Cdd:COG4913 243 ALEDAREQI--ELLEPIrELAERYAAARERLAELEYLRAAL------RLWFAQRRLEL-LEAELEE---LRAELARLEAE 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 272 LAELRDQRQgerlEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLL 351
Cdd:COG4913 311 LERLEARLD----ALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907204921 352 EQLQEIGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYEREL 422
Cdd:COG4913 387 AEAAALLEALEEELEALEEALAEAEAAL----RDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
191-449 |
4.26e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 4.26e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 191 KWEMEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQ-------QRKEADLKAQLARTQKLQ 262
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEElEKLTEEISELEKRLEEIEQLLEELNKKIKDLGeeeqlrvKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 263 QELEAANQSLAELRDQRQGERLEHAAALRALQDQIQT-------------AKTQELNMLREQTSELASELQHRQAEYEEL 329
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdklteeyaELKEELEDLRAELEEVDKEFAETRDELKDY 390
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 330 MGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELGAVRLRHEK 409
Cdd:TIGR02169 391 REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE-IKKQEWKLEQLAADLSKYEQ 469
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907204921 410 ELLGVRARYERELRELHEdKKRQEEELRGQIREEKARTRE 449
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSK-LQRELAEAEAQARASEERVRG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
253-464 |
1.81e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 253 AQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQiqtakTQELNMLREQTSELASELQHRQAEYEELMGQ 332
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL-----ERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 333 KDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELgavrlrheKELL 412
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADL--------AELA 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 413 GVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 464
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
256-443 |
3.36e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 3.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 256 ARTQKLQQELEAANQSLAELrdQRQGERLEH----AAALR-------ALQDQIQTAKtQELNMLREQTSELASELQHRQA 324
Cdd:COG3096 893 DRLEELREELDAAQEAQAFI--QQHGKALAQleplVAVLQsdpeqfeQLQADYLQAK-EQQRRLKQQIFALSEVVQRRPH 969
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 325 ----EYEELMGQKDDLNSQLQESLR----ANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQ----- 391
Cdd:COG3096 970 fsyeDAVGLLGENSDLNEKLRARLEqaeeARREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQELEElgvqa 1049
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 392 ----------EKSQHKEELGAVRLRhEKELLGVRARYERELRELHEDKKRQEEELRgQIREE 443
Cdd:COG3096 1050 daeaeerariRRDELHEELSQNRSR-RSQLEKQLTRCEAEMDSLQKRLRKAERDYK-QEREQ 1109
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
213-472 |
3.46e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 3.46e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 213 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQrKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAA 289
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISS-ELPELREELEKLEKEVKELEELKEEIEELEKElesLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 290 LRALQDQIQTAKtQELNMLREQTSELaSELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQ 369
Cdd:PRK03918 261 IRELEERIEELK-KEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 370 EARKSAEKRKVMLDELamETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRE 449
Cdd:PRK03918 339 RLEELKKKLKELEKRL--EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGE 416
|
250 260
....*....|....*....|...
gi 1907204921 450 LENlqhTVEELQAQVHSMDGAKG 472
Cdd:PRK03918 417 LKK---EIKELKKAIEELKKAKG 436
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
196-459 |
4.29e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 4.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 196 REEKKLLWEQLQGLElsEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEAD-----LKAQLARTQKLQQELEAANQ 270
Cdd:COG4913 609 RAKLAALEAELAELE--EELAEAEERLEALEAELDAL-QERREALQRLAEYSWDEidvasAEREIAELEAELERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 271 SLAELRDQrqgerlehaaaLRALQDQIQTAKtQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsRL 350
Cdd:COG4913 686 DLAALEEQ-----------LEELEAELEELE-EELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRA--LL 751
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 351 LEQLQEIGQEK--EQLTQDLQEARKSAEKRkvmLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHED 428
Cdd:COG4913 752 EERFAAALGDAveRELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLDADLESLPE-YLALLDRLEED 827
|
250 260 270
....*....|....*....|....*....|..
gi 1907204921 429 K-KRQEEELRGQIREEKarTRELENLQHTVEE 459
Cdd:COG4913 828 GlPEYEERFKELLNENS--IEFVADLLSKLRR 857
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
213-399 |
1.32e-06 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 51.64 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 213 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 292
Cdd:pfam03528 11 AELEKENAEFYRLKQQLEAEFNQKRAKFKELYLAKEEDLKRQNAVLQEAQVELDALQNQLALARAEMENIKAVATVSENT 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 293 LQDQIQTAKTQelnmLREQTSELASELQHRQAEYE-----ELMGQKDDLNSQLQESLRANSRLLEQLQEiGQEKEQLTQD 367
Cdd:pfam03528 91 KQEAIDEVKSQ----WQEEVASLQAIMKETVREYEvqfhrRLEQERAQWNQYRESAEREIADLRRRLSE-GQEEENLEDE 165
|
170 180 190
....*....|....*....|....*....|....
gi 1907204921 368 LQEARKSAEKRK--VMLDELAMETLQEKSQHKEE 399
Cdd:pfam03528 166 MKKAQEDAEKLRsvVMPMEKEIAALKAKLTEAED 199
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
211-410 |
1.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 211 LSEKLKKKQESFCRLQTEKETLFNDsrnKIEELQQRKEAdLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAAL 290
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLK---ELKELEEELKE-AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 291 RALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQEslrANSRLLEQLQEIGQEKEQLTQDLQE 370
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAE---LQEELEELLEQLSLATEEELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1907204921 371 ARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKE 410
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
7-584 |
1.54e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQK---ALSK--SKKAQEVEVLLSENEMLQAK 81
Cdd:TIGR02168 301 EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEeleSLEAelEELEAELEELESRLEELEEQ 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 82 LHSQEEDF---RLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAGAHVDGELLRLQAENTALQKNMAALQERygkea 158
Cdd:TIGR02168 381 LETLRSKVaqlELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEE----- 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 159 vrpsavgegqgdppgdvlptplapmpLAEVELKWEMEREEKKLLWEQLQGLELSEK-LKKKQESFCRLQTEKETLFNDSR 237
Cdd:TIGR02168 456 --------------------------LERLEEALEELREELEEAEQALDAAERELAqLQARLDSLERLQENLEGFSEGVK 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 238 NKIEELQQRKEAD--LKAQLARTQKLQQELEA----------------ANQSLAELRDQRQG------------------ 281
Cdd:TIGR02168 510 ALLKNQSGLSGILgvLSELISVDEGYEAAIEAalggrlqavvvenlnaAKKAIAFLKQNELGrvtflpldsikgteiqgn 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 282 ---ERLEHAAALRALQDQIQTAK-------------------TQELNMLRE-----------------------QTSELA 316
Cdd:TIGR02168 590 dreILKNIEGFLGVAKDLVKFDPklrkalsyllggvlvvddlDNALELAKKlrpgyrivtldgdlvrpggvitgGSAKTN 669
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 317 SELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARksaekRKVMLDELAMETLQEKSQH 396
Cdd:TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS-----RQISALRKDLARLEAEVEQ 744
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 397 KEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFER 476
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 477 RLKEAEESLQQQQQEQEET------LKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQR 550
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLeeqieeLSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
650 660 670
....*....|....*....|....*....|....
gi 1907204921 551 ILEKKgsavLKDLKRQLHLERKRADKLQERLQEI 584
Cdd:TIGR02168 905 ELESK----RSELRRELEELREKLAQLELRLEGL 934
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
4-367 |
2.08e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 4 ALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSK-SKKAQEVEVLLSENEMLQAKL 82
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQlEERIAQLSKELTELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 83 HSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagahvdgELLRLQAENTALQKNMAALQERYGKEAVRPS 162
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALRE------------ALDELRAELTLLNEEAANLRERLESLERRIA 834
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 163 AVGEGQGDppgdvLPTPLAPMPLAEVELKWEMEREEKkLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEE 242
Cdd:TIGR02168 835 ATERRLED-----LEEQIEELSEDIESLAAEIEELEE-LIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 243 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ---RQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASEL 319
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVN 988
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1907204921 320 QHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQD 367
Cdd:TIGR02168 989 LAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
239-463 |
2.15e-06 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 51.76 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 239 KIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAalRALQDQIqTAKTQELNMLREQTSELASE 318
Cdd:NF012221 1566 RAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETNGQAQRDAILEES--RAVTKEL-TTLAQGLDALDSQATYAGES 1642
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 319 LQHRQAEYEElmGQKDDLNSQLQEslrANSRLLEQLQEIgqeKEQLTQDLQEARKSAEKRkvmldelamETLQEKSQHKe 398
Cdd:NF012221 1643 GDQWRNPFAG--GLLDRVQEQLDD---AKKISGKQLADA---KQRHVDNQQKVKDAVAKS---------EAGVAQGEQN- 1704
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907204921 399 elgavrlRHEKELLGVRARYERELRELHEDKKRQEEELR---GQIREEKARTR-ELENLQHTVEELQAQ 463
Cdd:NF012221 1705 -------QANAEQDIDDAKADAEKRKDDALAKQNEAQQAesdANAAANDAQSRgEQDASAAENKANQAQ 1766
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
210-586 |
2.59e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 210 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKE----------ADLKAQLARTQKLQQELEAANQSLAELR 276
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELaeeVRDLRERLEELEEERDdllaeaglddADAEAVEARREELEDRDEELRDRLEECR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 277 dQRQGERLEHAAALRALQDQIQTAKTQelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLqESLRA---------- 346
Cdd:PRK02224 335 -VAAQAHNEEAESLREDADDLEERAEE----LREEAAELESELEEAREAVEDRREEIEELEEEI-EELRErfgdapvdlg 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 347 -----NSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELA-------------METLQEKSQHKEELGAVRLRHE 408
Cdd:PRK02224 409 naedfLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphVETIEEDRERVEELEAELEDLE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 409 KELLGVRARYER--ELRELH------EDKKRQEEELRGQIREEKARTRE-LENLQHTVEEL----QAQVHSMDGAKGWFE 475
Cdd:PRK02224 489 EEVEEVEERLERaeDLVEAEdrierlEERREDLEELIAERRETIEEKRErAEELRERAAELeaeaEEKREAAAEAEEEAE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 476 RRLKEAEESLQQQQQEQEETLKLCR-EEHAAELKGKDEELQNVREQLQQAQE---ERDGHVKTISNLKQEVKDTVDGQRI 551
Cdd:PRK02224 569 EAREEVAELNSKLAELKERIESLERiRTLLAAIADAEDEIERLREKREALAElndERRERLAEKRERKRELEAEFDEARI 648
|
410 420 430
....*....|....*....|....*....|....*
gi 1907204921 552 LEKKGsavlkdlkrqlhlERKRADKLQERLQEILT 586
Cdd:PRK02224 649 EEARE-------------DKERAEEYLEQVEEKLD 670
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-442 |
4.31e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 4.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 2 AQALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQ-EVEVLLSENEMLQA 80
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeELEEALAELEEEEE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 81 KLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEgvpgaagahvdgELLRLQAENTALQKNMAALQERYGKEAVR 160
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA------------ALAELLEELAEAAARLLLLLEAEADYEGF 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 161 PSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMEREEkkLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKI 240
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRA 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 241 EELQQRKEADLKAQLARtqklqqELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQ 320
Cdd:COG1196 585 RAALAAALARGAIGAAV------DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 321 HRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEigQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEEL 400
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELE--LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREE 736
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1907204921 401 GAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE 442
Cdd:COG1196 737 LLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
243-464 |
5.02e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 50.02 E-value: 5.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 243 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 322
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 323 QAEYEELMGQKDDLNSQLQESlRANSRLLEQLQEIGQEKEQLTQDLQEarksaekrkvmlDELAMETLQeksqhkEELGA 402
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTP------------NHPDVIALR------AQIAA 302
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 403 VRLRHEKELLGVRARYERELRELhedkKRQEEELRGQIREEKARTRELENLQHTVEELQAQV 464
Cdd:COG3206 303 LRAQLQQEAQRILASLEAELEAL----QAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
356-609 |
6.52e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.07 E-value: 6.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 356 EIGQEKEQLTQDLQEARKSAEKRKVMLDELA--METLQEKSQHKEELGAVRLRHEkellgvraryERELRELHEDKKRQE 433
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEENIERLDLIIDEKRqqLERLRREREKAERYQALLKEKR----------EYEGYELLKEKEALE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 434 EELRGQIREEKARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEE 513
Cdd:TIGR02169 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 514 LQNVREQLQQAQEERDGHVKTISNLKQEVKDtvdgQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTG 593
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEE----ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250
....*....|....*.
gi 1907204921 594 LEELVLSEMNSPSRTQ 609
Cdd:TIGR02169 393 KLEKLKREINELKREL 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
180-378 |
8.99e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 180 LAPMPLAEVELKWEMEREEKKLLWEQLQglELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQ 259
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIA--ELEKELAALKKEEKALLKQLAAL-ERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 260 KLQQELEAANQSLAELRD---------QRQG-----------------------------ERLEHAAALRALQDQIQtAK 301
Cdd:COG4942 87 ELEKEIAELRAELEAQKEelaellralYRLGrqpplalllspedfldavrrlqylkylapARREQAEELRADLAELA-AL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907204921 302 TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKR 378
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
287-557 |
1.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 287 AAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQ 366
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 367 DLQEARKSAEKRKVMLDELaMETLQEKSQHKEELGAVRLRHEKELLgVRARYereLRELHEDKKRQEEELRGQIREEKAR 446
Cdd:COG4942 91 EIAELRAELEAQKEELAEL-LRALYRLGRQPPLALLLSPEDFLDAV-RRLQY---LKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 447 TRELENLQHTVEELQAQVhsmdgakgwferrlkeaeeslqQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 526
Cdd:COG4942 166 RAELEAERAELEALLAEL----------------------EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
250 260 270
....*....|....*....|....*....|.
gi 1907204921 527 ERDGHVKTISNLKQEVKDTVDGQRILEKKGS 557
Cdd:COG4942 224 ELEALIARLEAEAAAAAERTPAAGFAALKGK 254
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
7-370 |
1.21e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 7 EEEFQRMQTQLLELRTnnyqlsdelrkngvELSSLRQKVAYLDKEFSKAQKALSKSKKaqEVEVLLSENEMLQAKLHSQE 86
Cdd:TIGR02169 673 PAELQRLRERLEGLKR--------------ELSSLQSELRRIENRLDELSQELSDASR--KIGEIEKEIEQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 87 EdfrlqnstlmaefsklcsQLEQLELENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYGKeavrpsavge 166
Cdd:TIGR02169 737 E------------------RLEELEEDLSSLEQEI-----ENVKSELKELEARIEELEEDLHKLEEALND---------- 783
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 167 gqgdppgdvLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQ 245
Cdd:TIGR02169 784 ---------LEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKlNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK 854
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 246 RKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ--ELNMLREQTSELASELQHRQ 323
Cdd:TIGR02169 855 EIE-NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQieKKRKRLSELKAKLEALEEEL 933
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1907204921 324 AEYEELMGQkddlnsqlQESLRANSRLLEQLQEIGQEKEQLTQDLQE 370
Cdd:TIGR02169 934 SEIEDPKGE--------DEEIPEEELSLEDVQAELQRVEEEIRALEP 972
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
187-328 |
2.05e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 2.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 187 EVELKWEMEREEKKLLWEQlqglELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQrKEADLKAQLARTQKLQQELE 266
Cdd:PRK12704 57 EALLEAKEEIHKLRNEFEK----ELRERRNELQKLEKRLLQKEENL----DRKLELLEK-REEELEKKEKELEQKQQELE 127
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 267 AANQSLAELRDQRQgERLEHAAALRALQdqiqtAKTQELNMLREQTSELASELQHrqaEYEE 328
Cdd:PRK12704 128 KKEEELEELIEEQL-QELERISGLTAEE-----AKEILLEKVEEEARHEAAVLIK---EIEE 180
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
38-764 |
3.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 3.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 38 LSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAK-----LHSQEEDFRLQNSTLMAEFSKLCSQLEQLEL 112
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELReeleeLQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 113 ENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYgKEAVRPSAVGEGQgdppgdvlptplapmpLAEVELKW 192
Cdd:TIGR02168 275 EVSELEEEI-----EELQKELYALANEISRLEQQKQILRERL-ANLERQLEELEAQ----------------LEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 193 EMEREEKKLLWEQLQGL-ELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqRKEADLKAQLARTQKLQQELEAANQS 271
Cdd:TIGR02168 333 DELAEELAELEEKLEELkEELESLEAELEELEAELEELESRLEELEEQLETLR-SKVAQLELQIASLNNEIERLEARLER 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 272 LAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL- 350
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELE---ELQEELERLEEALEELREELEEAEQALDAAERELAQLq 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 351 --LEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLD------------ELAMET-LQEKSQH------KEELGAVRLRHEK 409
Cdd:TIGR02168 489 arLDSLERLQENLEGFSEGVKALLKNQSGLSGILGvlselisvdegyEAAIEAaLGGRLQAvvvenlNAAKKAIAFLKQN 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 410 EL-----LGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLqhtVEELQAQVHSMDGAKGWFERRLKEAEES 484
Cdd:TIGR02168 569 ELgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA---LSYLLGGVLVVDDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 485 L--------------QQQQQEQEETLKLCREEHAAELKGKDEELQnvrEQLQQAQEERDGHVKTISNLKQEVKDTVDGQR 550
Cdd:TIGR02168 646 RivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELE---EKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 551 ILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGL--------EELVLSEMNSPSRTQTGDSSSVSSFSYR 622
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELeerleeaeEELAEAEAEIEELEAQIEQLKEELKALR 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 623 EILKEKESSaipARSLSSSPQAQPPRPAELSDeEVAELFQRLAETQQEKWMLEEKVKHLEVSSASMAEDLCRKSAIIEty 702
Cdd:TIGR02168 803 EALDELRAE---LTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE-- 876
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 703 VMDSRIDVSVAAGHTDRSGLGSVLRDLvKPGDENLREMNKKLQNMLEEQLTKNMHLHKASVD 764
Cdd:TIGR02168 877 ALLNERASLEEALALLRSELEELSEEL-RELESKRSELRRELEELREKLAQLELRLEGLEVR 937
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
193-578 |
3.41e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 193 EMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLfndsRNKIEELQQRKEAdlKAQLARTQKLQQELEAANQSL 272
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL----REELEKLEKLLQL--LPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 273 AELRDQRQgERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQ------ESLRA 346
Cdd:COG4717 149 EELEERLE-ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEeaqeelEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 347 NSRLLEQLQEIGQEKEQLTQDLQEAR------------KSAEKRKVMLDELAM-----------ETLQEKSQHKEELGAV 403
Cdd:COG4717 228 ELEQLENELEAAALEERLKEARLLLLiaaallallglgGSLLSLILTIAGVLFlvlgllallflLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 404 RLRHEKELLgVRARYERELRELHEDKKRQEEELRGQIR------------EEKARTRELENLQHTVEEL--QAQVHSMDG 469
Cdd:COG4717 308 QALPALEEL-EEEELEELLAALGLPPDLSPEELLELLDrieelqellreaEELEEELQLEELEQEIAALlaEAGVEDEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 470 AKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKD---EELQNVREQLQQAQEERDGHVKTISNLKQEVKDTV 546
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeleEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
410 420 430
....*....|....*....|....*....|..
gi 1907204921 547 DGQRILEKKgsAVLKDLKRQLHLERKRADKLQ 578
Cdd:COG4717 467 EDGELAELL--QELEELKAELRELAEEWAALK 496
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
225-528 |
3.66e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 47.43 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 225 LQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSlaelrdqRQGErLEHAAALRALQDQIQTAKTQE 304
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKA-------RQAE-MDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 305 LNMLREQTSELASElQHRQAEYEELMGQKddlnsqlqeslransRLLEQLQ-EIGQEKEQLTQDLQEARK-----SAEKR 378
Cdd:pfam17380 350 LERIRQEERKRELE-RIRQEEIAMEISRM---------------RELERLQmERQQKNERVRQELEAARKvkileEERQR 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 379 KVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELR----GQIREEKARTRELENLQ 454
Cdd:pfam17380 414 KIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERkrkkLELEKEKRDRKRAEEQR 493
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907204921 455 HTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGkdEELQNVREQLQQAQEER 528
Cdd:pfam17380 494 RKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEM--EERRRIQEQMRKATEER 565
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
185-462 |
1.01e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 185 LAEVELKWEmEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRK---EADLKAQLARTQK 260
Cdd:PRK02224 484 LEDLEEEVE-EVEERLERAEDLVEAEDRiERLEERREDLEELIAERRETIEEKRERAEELRERAaelEAEAEEKREAAAE 562
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 261 LQQELEAANQSLAELRDQRQ--GERLEHAAALRALQDQIqTAKTQELNMLREQTSELAselqhrqaeyeelmgqkdDLNS 338
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKLAelKERIESLERIRTLLAAI-ADAEDEIERLREKREALA------------------ELND 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 339 QLQEslransrlleQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEElgavrlrHEKELLGVRARY 418
Cdd:PRK02224 624 ERRE----------RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELRE-------ERDDLQAEIGAV 686
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1907204921 419 ERELRELhedkkrqeEELRGQIREEKARTRELENLQHTVEELQA 462
Cdd:PRK02224 687 ENELEEL--------EELRERREALENRVEALEALYDEAEELES 722
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
189-451 |
1.70e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 189 ELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQqRKEADLKAQLARTQKLQQELEAA 268
Cdd:TIGR02169 706 ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELK-ELEARIEELEEDLHKLEEALNDL 784
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 269 NQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANS 348
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE 864
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 349 RLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDEL--AMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELH 426
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELerKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
250 260
....*....|....*....|....*..
gi 1907204921 427 EDKKRQ--EEELRGQIREEKARTRELE 451
Cdd:TIGR02169 945 EIPEEElsLEDVQAELQRVEEEIRALE 971
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
185-372 |
1.71e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 185 LAEVELKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKetlfNDSRNKIEELQQRKEADLKA-----QLARTQ 259
Cdd:COG3206 191 LEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL----AEAEARLAALRAQLGSGPDAlpellQSPVIQ 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 260 KLQQELEAANQSLAELRdQRQGERlehAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQ 339
Cdd:COG3206 267 QLRAQLAELEAELAELS-ARYTPN---HPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907204921 340 LQESLRANSRL--LEQLQEIGQEK-EQLTQDLQEAR 372
Cdd:COG3206 343 LAELPELEAELrrLEREVEVARELyESLLQRLEEAR 378
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
7-591 |
2.23e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 7 EEEFQRMQTQLLEL-------RTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEM-L 78
Cdd:pfam12128 247 QQEFNTLESAELRLshlhfgyKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELeA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 79 QAKLHSQEEDFRLQnsTLMAEFSKLCSQLEQLELENRQLKegvpGAAGAHVDGE----------LLRLQAENTALQKNMA 148
Cdd:pfam12128 327 LEDQHGAFLDADIE--TAAADQEQLPSWQSELENLEERLK----ALTGKHQDVTakynrrrskiKEQNNRDIAGIKDKLA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 149 ALQERYGKEAVRPSAVGEGQGDPPGDVLPTPLAPMPLAEVELKWEMERE---------EKKLLWEQLQGLELSEKLKKKQ 219
Cdd:pfam12128 401 KIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELklrlnqataTPELLLQLENFDERIERAREEQ 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 220 E----SFCRLQTEkETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSL-------AELRDQRQGERLEHAA 288
Cdd:pfam12128 481 EaanaEVERLQSE-LRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLlhflrkeAPDWEQSIGKVISPEL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 289 ALRALQDQIQTAKT--QELNM----LREQTSELASELQHRQAEYEELmgqkDDLNSQLQESLRANSRLLEQLQEIGQEKE 362
Cdd:pfam12128 560 LHRTDLDPEVWDGSvgGELNLygvkLDLKRIDVPEWAASEEELRERL----DKAEEALQSAREKQAAAEEQLVQANGELE 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 363 QLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVraryERELRELHEDKKRQEEELRGQIRE 442
Cdd:pfam12128 636 KASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSL----EAQLKQLDKKHQAWLEEQKEQKRE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 443 ekARTRELENLQHTVEELQAQVHSMDGAKGWFERRLKEAeeslqqqqqeqeetLKLCREEHAAELKGKDEELQNV----- 517
Cdd:pfam12128 712 --ARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAE--------------LKALETWYKRDLASLGVDPDVIaklkr 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 518 -REQLQQ--AQEERDGHVKTI-------------SNLKQEVKDTVDGQRILEKKGSAVLKDLKR---QLHLERKRADKLQ 578
Cdd:pfam12128 776 eIRTLERkiERIAVRRQEVLRyfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIADTKLrraKLEMERKASEKQQ 855
|
650
....*....|...
gi 1907204921 579 ERLQEILTNSKSR 591
Cdd:pfam12128 856 VRLSENLRGLRCE 868
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
237-463 |
2.31e-04 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 44.63 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 237 RNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQ-----------RQGERLEHAAALRALQDQIQTAKTQEL 305
Cdd:pfam05667 242 KRKRTKLLKRIAEQLRSAALAGTEATSGASRSAQDLAELLSSfsgssttdtglTKGSRFTHTEKLQFTNEAPAATSSPPT 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 306 NMLREQTSElaselQHRQAEYEELMGQKDDLNS---QLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVML 382
Cdd:pfam05667 322 KVETEEELQ-----QQREEELEELQEQLEDLESsiqELEKEIKKLESSIKQVEEELEELKEQNEELEKQYKVKKKTLDLL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 383 --DELAMETLQEK----SQHKEELGAVRLRHEKELLgvrARYeRELRELHEDKKRQEEELRGQIREEKARTRELENLQHT 456
Cdd:pfam05667 397 pdAEENIAKLQALvdasAQRLVELAGQWEKHRVPLI---EEY-RALKEAKSNKEDESQRKLEEIKELREKIKEVAEEAKQ 472
|
....*..
gi 1907204921 457 VEELQAQ 463
Cdd:pfam05667 473 KEELYKQ 479
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
216-589 |
3.37e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 216 KKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQD 295
Cdd:TIGR00618 307 QQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 296 QIQTAKTQE--LNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARK 373
Cdd:TIGR00618 387 QKTTLTQKLqsLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQ 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 374 SAEKRKVMLDELAMETLQEKSQHKEElGAVRLRHEKEllgvraRYERELRELHEDKKRQeeelrgQIREEKARTRELENL 453
Cdd:TIGR00618 467 SLKEREQQLQTKEQIHLQETRKKAVV-LARLLELQEE------PCPLCGSCIHPNPARQ------DIDNPGPLTRRMQRG 533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 454 QHTVEELQAQVHSMDGaKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVK 533
Cdd:TIGR00618 534 EQTYAQLETSEEDVYH-QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907204921 534 TISNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSK 589
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIR 668
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
8-466 |
5.85e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 5.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 8 EEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKAQEVEVLLSENEMLQAKLHSQEE 87
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 88 DFRlQNSTLMAEFSKLCSQLEQLELENRQLKEGVPgaagAHVDGELLRLQAENTALQKNMAALQERYGKEAVRPSAVGEg 167
Cdd:COG4717 154 RLE-ELRELEEELEELEAELAELQEELEELLEQLS----LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEE- 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 168 qgdppgdvlptplapmPLAEVELKWEMEREEKKLLWEQLQGLELS-----EKLKKKQESFCRLQTEKETLFNDSRNKIEE 242
Cdd:COG4717 228 ----------------ELEQLENELEAAALEERLKEARLLLLIAAallalLGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 243 LQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHR 322
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 323 QAEYEELMGQKDDlnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMET-LQEKSQHKEELG 401
Cdd:COG4717 372 IAALLAEAGVEDE------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeLEELEEELEELE 445
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907204921 402 AVRLRHEKELLGVRARYER-ELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHS 466
Cdd:COG4717 446 EELEELREELAELEAELEQlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYRE 511
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
213-585 |
6.06e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 6.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 213 EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRA 292
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEIN-EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 293 LQDQIQTAKTQELNMLREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEAR 372
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK---KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 373 KSAEKRKVMLDELametLQEKSQHKEELgaVRLRHEKELLgvraryERELRELHEDKKRQEEELRGQIREEKARTRELEN 452
Cdd:TIGR04523 363 RELEEKQNEIEKL----KKENQSYKQEI--KNLESQINDL------ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIER 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 453 LQHTVEELQAQVHSMDGAKGWFE------RRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQE 526
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKEliiknlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEE 510
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 527 ERDGHVKTISNLKQEVKDTVDGQRILEKKGSAVLKDLKR----------------------QLHLERKRADKLQERLQEI 584
Cdd:TIGR04523 511 KVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenlekeideknkeieELKQTQKSLKKKQEEKQEL 590
|
.
gi 1907204921 585 L 585
Cdd:TIGR04523 591 I 591
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
230-470 |
6.40e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 6.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 230 ETLFNDSRNKIEELQQrKEADLKAQLArtqKLQQELEAANQSLAELRDQRQGERlehaAALRALQDQIQTAKtQELNMLR 309
Cdd:COG3883 15 DPQIQAKQKELSELQA-ELEAAQAELD---ALQAELEELNEEYNELQAELEALQ----AEIDKLQAEIAEAE-AEIEERR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 310 EQTSELASELQHRQAEY---EELMGQKD--DLNSQ---LQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVM 381
Cdd:COG3883 86 EELGERARALYRSGGSVsylDVLLGSESfsDFLDRlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 382 LDELAMETLQEKSQHKEELgavrlrheKELLGVRARYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQ 461
Cdd:COG3883 166 LEAAKAELEAQQAEQEALL--------AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237
|
....*....
gi 1907204921 462 AQVHSMDGA 470
Cdd:COG3883 238 AAAAAAASA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
306-596 |
6.63e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 6.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 306 NMLRE-QTSELASELQhrqAEYEELMGQKDDLnsqlqESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDE 384
Cdd:COG4913 216 YMLEEpDTFEAADALV---EHFDDLERAHEAL-----EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 385 LAMETLQEKSQhkeelgavRLRHEKELLGVRaryERELRELHEDKKRQEEELRGQIREEKarTRELENLQHTVEELQAQV 464
Cdd:COG4913 288 RRLELLEAELE--------ELRAELARLEAE---LERLEARLDALREELDELEAQIRGNG--GDRLEQLEREIERLEREL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 465 hsmdgakgwfERRLKEaeeslqqqqqeqeetlklcREEHAAELKGKDEELQNVREQLQQAQEERDGHVKTISNLKQEVKD 544
Cdd:COG4913 355 ----------EERERR-------------------RARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE 405
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1907204921 545 TVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLEE 596
Cdd:COG4913 406 ALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
195-466 |
6.64e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 6.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 195 EREEKKLLWEQLQGLELSEKLKKKQESfcrlqtEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAE 274
Cdd:pfam02463 234 LNEERIDLLQELLRDEQEEIESSKQEI------EKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 275 LRDQRQGERLEHAAALRALQDQIQTAKTQELNMLREQTSELASELQHRQAEyEELMGQKDDLNSQLQESLRANSRLLEQL 354
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEE-EELEKLQEKLEQLEEELLAKKKLESERL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 355 QEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEE 434
Cdd:pfam02463 387 SSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE 466
|
250 260 270
....*....|....*....|....*....|..
gi 1907204921 435 ELRGQIREEKARTRELENLQHTVEELQAQVHS 466
Cdd:pfam02463 467 LKKSEDLLKETQLVKLQEQLELLLSRQKLEER 498
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
224-377 |
7.26e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 224 RLQTEKETLfNDSRNKIEELQQRK-----EADLKAQLARTQKLQQELEAANQSLAELRDQ----RQGERLEHAAALRALQ 294
Cdd:COG3206 183 QLPELRKEL-EEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARlaalRAQLGSGPDALPELLQ 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 295 DQIQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE-QLQEIGQEKEQLTQDLQEARK 373
Cdd:COG3206 262 SPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEaELEALQAREASLQAQLAQLEA 341
|
....
gi 1907204921 374 SAEK 377
Cdd:COG3206 342 RLAE 345
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
188-584 |
8.31e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 188 VELKWEMEREEKKLLWEQLQGLELSEKLKKKQ---ESFCRLQTEKETLFNDSRNKIEELQQRKEAD----LKAQLARTQK 260
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQkelEQNNKKIKELEKQLNQLKSEISDLNNQKEQDwnkeLKSELKNQEK 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 261 ----LQQELEAANQSLAELRDQRQGERLEhaaaLRALQDQIQTaKTQELNMLREQTSELASELQHRQAEYEELMGQKDDL 336
Cdd:TIGR04523 322 kleeIQNQISQNNKIISQLNEQISQLKKE----LTNSESENSE-KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 337 NSQLQESLRANSRLLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQHKeELGAVRLRHEKELlgvrA 416
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK-NLDNTRESLETQL----K 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 417 RYERELRELHEDKKRQEEELRGQIREEKARTRELENLQHTVEELQAQVHSMdgakgwferrlkeaeeslqqqqQEQEETL 496
Cdd:TIGR04523 472 VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSL----------------------KEKIEKL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 497 KLCREEHAAELKGKDEELQNVREQLQQAQ--EERDGHVKTISNLKQEVKDTVDGQRILE---KKGSAVLKDLKRQLHLER 571
Cdd:TIGR04523 530 ESEKKEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTQKSLKKKQEEKQeliDQKEKEKKDLIKEIEEKE 609
|
410
....*....|...
gi 1907204921 572 KRADKLQERLQEI 584
Cdd:TIGR04523 610 KKISSLEKELEKA 622
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
226-544 |
9.11e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 9.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 226 QTEKETLFNDSRNKIEELQQRKEADL-----KAQLARTQ--KLQQELE-----AANQS------LAELRDQRQGERLEHA 287
Cdd:pfam15921 255 QNKIELLLQQHQDRIEQLISEHEVEItglteKASSARSQanSIQSQLEiiqeqARNQNsmymrqLSDLESTVSQLRSELR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 288 AALRALQDQIQTaktqelnmLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLranSRLLEQLQEIGQEKEQ---- 363
Cdd:pfam15921 335 EAKRMYEDKIEE--------LEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---ADLHKREKELSLEKEQnkrl 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 364 LTQDLQEARKSAEKRKvMLDELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYE--RELRELHEDKKRQEEELRGQIR 441
Cdd:pfam15921 404 WDRDTGNSITIDHLRR-ELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVE 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 442 EEKARTRELENLQHTVEELQAQVHsmdgakgwfERRLKEAEESLQQQQQEQEETLKLCREEHaaeLKGKDEELQNVREQL 521
Cdd:pfam15921 483 ELTAKKMTLESSERTVSDLTASLQ---------EKERAIEATNAEITKLRSRVDLKLQELQH---LKNEGDHLRNVQTEC 550
|
330 340
....*....|....*....|...
gi 1907204921 522 QQAQEERDGHVKTISNLKQEVKD 544
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIEN 573
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
235-540 |
9.41e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.02 E-value: 9.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 235 DSRNKIEELQQRKE---ADLKAQLARTQKLQQELEAANQSLAELRD-QRQGERLEH-AAALRALqdqiqTAKTQELNMLR 309
Cdd:COG3096 296 GARRQLAEEQYRLVemaRELEELSARESDLEQDYQAASDHLNLVQTaLRQQEKIERyQEDLEEL-----TERLEEQEEVV 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 310 EqtsELASELQHRQAEYEELMGQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEkrkvmLDELAMET 389
Cdd:COG3096 371 E---EAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA----LDVQQTRAIQYQQAVQALEKARALCG-----LPDLTPEN 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 390 L---QEKSQHKEELGAVRLRHEKELLGV----RARYERELREL--------HEDKKRQEEELRGQIREEKARTRELENLQ 454
Cdd:COG3096 439 AedyLAAFRAKEQQATEEVLELEQKLSVadaaRRQFEKAYELVckiageveRSQAWQTARELLRRYRSQQALAQRLQQLR 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 455 HTVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQEERDGHVKT 534
Cdd:COG3096 519 AQLAELEQRLRQQQNA-----ERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
....*.
gi 1907204921 535 ISNLKQ 540
Cdd:COG3096 594 IKELAA 599
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
245-684 |
9.96e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 9.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 245 QRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHAAALRALQ--DQIQTAKTQELNMLREQTSELASELQHR 322
Cdd:pfam05557 33 EKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKkyLEALNKKLNEKESQLADAREVISCLKNE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 323 QAEYE-ELMGQKDDLNSQLQESLRANSRLlEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAMEtLQEKSQHKEELG 401
Cdd:pfam05557 113 LSELRrQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFE-IQSQEQDSEIVK 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 402 AVRLRhekelLGVRARYERELRELHEDKKRqeeelrgqireekartreLENLQHTVEELQAQVHSMdgakgwfERRLKEA 481
Cdd:pfam05557 191 NSKSE-----LARIPELEKELERLREHNKH------------------LNENIENKLLLKEEVEDL-------KRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 482 EESLQQQQQEQEETLKLCREEHAAELKGKDEEL-----QNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEKKG 556
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLnlrspEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 557 SAVLKDLKrQLHLERKRADKLQERLQ-EILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSYREILKE-------- 627
Cdd:pfam05557 321 AQYLKKIE-DLNKKLKRHKALVRRLQrRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKmqahneem 399
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907204921 628 --------------KESSAIPARSLSSSPQAQPPRPAELSDEEVAELFQRLAETQQEKWMLEEKVKHLEVS 684
Cdd:pfam05557 400 eaqlsvaeeelggyKQQAQTLERELQALRQQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEME 470
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
235-527 |
1.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 235 DSRNKIEELQQRKEA---DLKAQLARTQKLQQELEAANQSLA----ELRDQRQGERLEhaAALRALqdqiqTAKTQELNM 307
Cdd:PRK04863 297 TSRRQLAAEQYRLVEmarELAELNEAESDLEQDYQAASDHLNlvqtALRQQEKIERYQ--ADLEEL-----EERLEEQNE 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 308 LREQTSELASELQHRQAEYEElmgQKDDLNSQLQESLRAnsrlLEQLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELam 387
Cdd:PRK04863 370 VVEEADEQQEENEARAEAAEE---EVDELKSQLADYQQA----LDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNA-- 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 388 ETLQEKSQHKEELGAVRLRHEKELLGV----RARYERELRELH--------EDKKRQEEELRGQIREEKARTRELENLQH 455
Cdd:PRK04863 441 EDWLEEFQAKEQEATEELLSLEQKLSVaqaaHSQFEQAYQLVRkiagevsrSEAWDVARELLRRLREQRHLAEQLQQLRM 520
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907204921 456 TVEELQAQVHSMDGAkgwfeRRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQ---LQQAQEE 527
Cdd:PRK04863 521 RLSELEQRLRQQQRA-----ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERrmaLRQQLEQ 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
7-392 |
1.09e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 7 EEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLD--KEFSKAQKALSK--------SKKAQEVEVLLSENE 76
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAElperleelEERLEELRELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 77 MLQAKLHSQEEDFR--LQNSTLMAE--FSKLCSQLEQLELENRQLKEGVpgaAGAHVDGELLRLQAENTALQKNMAALQE 152
Cdd:COG4717 167 ELEAELAELQEELEelLEQLSLATEeeLQDLAEELEELQQRLAELEEEL---EEAQEELEELEEELEQLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 153 RYGKEAVRPSAVG-----EGQGDPPGD--------------VLPTPLAPMPLAEVELKWEMEREEKKLLWEQLQGLELSE 213
Cdd:COG4717 244 RLKEARLLLLIAAallalLGLGGSLLSliltiagvlflvlgLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 214 KLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQEL--EAANQSLAELRD--QRQGERLEHAAA 289
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlaEAGVEDEEELRAalEQAEEYQELKEE 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 290 LRALQDQIQTAKTQELNMLREQT-SELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQ--LQEIGQEKEQLTQ 366
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDeEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgeLAELLQELEELKA 483
|
410 420
....*....|....*....|....*.
gi 1907204921 367 DLQEARKSAeKRKVMLDELAMETLQE 392
Cdd:COG4717 484 ELRELAEEW-AALKLALELLEEAREE 508
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
235-579 |
1.39e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.40 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 235 DSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLaelrdQRQgerlehAAALRALQDQIQTAkTQELNMLREQTSE 314
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-----QRS------MSTQKALEEDLQIA-TKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 315 LASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLE----QLQEIGQEKEQLTQDLQEARKSAEKRKVMLDELAM--- 387
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEknedQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKila 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 388 --ETLQEKSQHKEELGAVRLRHEKELLGVRARYERELREL----------HEDKKRQEEELRGQIREEKARTRELENlqh 455
Cdd:pfam05483 416 edEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLeiqltaiktsEEHYLKEVEDLKTELEKEKLKNIELTA--- 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 456 TVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDeELQNVREQLQQAQEERDGHVKTI 535
Cdd:pfam05483 493 HCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD-ELESVREEFIQKGDEVKCKLDKS 571
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1907204921 536 SNLKQEVKDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQE 579
Cdd:pfam05483 572 EENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQ 615
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
210-395 |
1.47e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 210 ELSEKLKKKQESFCRLQTEKETLfNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRD---------QRQ 280
Cdd:COG3883 20 AKQKELSELQAELEAAQAELDAL-QAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREelgeraralYRS 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 281 GERLEHAAAL---RALQDQIQTAKTqeLNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEI 357
Cdd:COG3883 99 GGSVSYLDVLlgsESFSDFLDRLSA--LSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQ 176
|
170 180 190
....*....|....*....|....*....|....*...
gi 1907204921 358 GQEKEQLTQDLQEARKSAEKRKVMLDELAMETLQEKSQ 395
Cdd:COG3883 177 QAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAA 214
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3-601 |
1.48e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 3 QALSEEEFQRMQTQLLELRTNNYQLSDELRKNGVELSSLRQKVAYLDKEFsKAQKALSKSK-------KAQEVEVLLSEN 75
Cdd:pfam15921 198 EASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQL-EALKSESQNKielllqqHQDRIEQLISEH 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 76 EM------------------LQAKLHSQEEDFRLQNSTLMAEFSKLCSQLEQLELENRQLKEGVPGAAgAHVDGELLRLQ 137
Cdd:pfam15921 277 EVeitgltekassarsqansIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKI-EELEKQLVLAN 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 138 AENTALQKNmaalQERYGKEAvrpsavgeGQGDppgDVLPTPLAPMPLAEVELkwEMEREEKKLLWEQLQGLELS----- 212
Cdd:pfam15921 356 SELTEARTE----RDQFSQES--------GNLD---DQLQKLLADLHKREKEL--SLEKEQNKRLWDRDTGNSITidhlr 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 213 -------------EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAElrDQR 279
Cdd:pfam15921 419 relddrnmevqrlEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLES--SER 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 280 QGERLehAAALRALQDQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSqLQESLRANSRLLEQLQeigQ 359
Cdd:pfam15921 497 TVSDL--TASLQEKERAIE-ATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILR---Q 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 360 EKEQLTQDLQEARKSAEKRKVmldelametlqEKSQHKEELGAVRLRHeKELLGVRARYERELRELHEDKKRQEEELRGQ 439
Cdd:pfam15921 570 QIENMTQLVGQHGRTAGAMQV-----------EKAQLEKEINDRRLEL-QEFKILKDKKDAKIRELEARVSDLELEKVKL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 440 IREEKARTRELENLQHTVEELQAQVHSMDGAKGwferRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVRE 519
Cdd:pfam15921 638 VNAGSERLRAVKDIKQERDQLLNEVKTSRNELN----SLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRN 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 520 QLqQAQEERDGH-VKTISNLKQEV---KDTVDGQRILEKKGSAVLKDLKRQLHLERKRADKLQERLQEILTNSKSRTGLE 595
Cdd:pfam15921 714 TL-KSMEGSDGHaMKVAMGMQKQItakRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGEL 792
|
....*.
gi 1907204921 596 ELVLSE 601
Cdd:pfam15921 793 EVLRSQ 798
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
209-464 |
1.80e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 209 LELSEKLKKKQESFCRLQTEKEtlfnDSRNKIEELQQRKEaDLKAQLARTQK---LQQ----ELEAANQSLAELRDQRQG 281
Cdd:PRK04863 358 EELEERLEEQNEVVEEADEQQE----ENEARAEAAEEEVD-ELKSQLADYQQaldVQQtraiQYQQAVQALERAKQLCGL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 282 ERLEHAAA---LRALQDQIQTAkTQELNMLrEQTSELASEL--QHRQAeYEELMGQKDDLN-SQLQESLRANSRLLEQLQ 355
Cdd:PRK04863 433 PDLTADNAedwLEEFQAKEQEA-TEELLSL-EQKLSVAQAAhsQFEQA-YQLVRKIAGEVSrSEAWDVARELLRRLREQR 509
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 356 EIGQEKEQLTQDLQEARKSAEKRKV---MLDELAMEtLQEKSQHKEELGAVRLRHEKELLGVRArYERELRELHEDKKRQ 432
Cdd:PRK04863 510 HLAEQLQQLRMRLSELEQRLRQQQRaerLLAEFCKR-LGKNLDDEDELEQLQEELEARLESLSE-SVSEARERRMALRQQ 587
|
250 260 270
....*....|....*....|....*....|..
gi 1907204921 433 EEELRGQIREEKARTRELENLQHTVEELQAQV 464
Cdd:PRK04863 588 LEQLQARIQRLAARAPAWLAAQDALARLREQS 619
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
190-467 |
1.91e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.13 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 190 LKWEMEREEKKLLWEQLQGL-----ELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQE 264
Cdd:pfam12128 244 TKLQQEFNTLESAELRLSHLhfgykSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 265 LEAANQSLAELRDqrqgERLEHAAALRALQDQIQTaktqELNMLREQTSELASELQHRQAEYE------------ELMGQ 332
Cdd:pfam12128 324 LEALEDQHGAFLD----ADIETAAADQEQLPSWQS----ELENLEERLKALTGKHQDVTAKYNrrrskikeqnnrDIAGI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 333 KDDLNSQLQESLRANSRLLEQLQEIGQE-KEQLTQDLQEARKSAEKRKVMLDELAM---------ETLQEKSQHKEELGA 402
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLKSRLGELKLrlnqatatpELLLQLENFDERIER 475
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907204921 403 VRLRHEKEllgvRARYERELRELHEDKKRQEEELRgQIREEKARTRELEN-LQHTVEELQAQVHSM 467
Cdd:pfam12128 476 AREEQEAA----NAEVERLQSELRQARKRRDQASE-ALRQASRRLEERQSaLDELELQLFPQAGTL 536
|
|
| DUF4686 |
pfam15742 |
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins ... |
190-374 |
2.07e-03 |
|
Domain of unknown function (DUF4686); This family of proteins is found in eukaryotes. Proteins in this family are typically between 498 and 775 amino acids in length. There is a conserved DLK sequence motif.
Pssm-ID: 464838 [Multi-domain] Cd Length: 384 Bit Score: 41.20 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 190 LKWEMEREEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFnDSRNKIEELQQRKEADLKAQLA-----RTQKLQQE 264
Cdd:pfam15742 81 LTAEWKHCQQKIRELELEVLKQAQSIKSQNSLQEKLAQEKSRVA-DAEEKILELQQKLEHAHKVCLTdtcilEKKQLEER 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 265 LEAANQSLAELRDQRQGERLEhaaalRALQDQIQTAKTQELNMLREQTSELA---SELQHRQAEYEELMGQKDDLNSQLQ 341
Cdd:pfam15742 160 IKEASENEAKLKQQYQEEQQK-----RKLLDQNVNELQQQVRSLQDKEAQLEmtnSQQQLRIQQQEAQLKQLENEKRKSD 234
|
170 180 190
....*....|....*....|....*....|...
gi 1907204921 342 ESLRANSRLLEQLQEIGQEKEQLTQDLQEARKS 374
Cdd:pfam15742 235 EHLKSNQELSEKLSSLQQEKEALQEELQQVLKQ 267
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
236-384 |
2.17e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 236 SRNKIEELQQRKEADLKAQLARTQKLQQEL------------EAANQSLAELRDQRQGERLEHAAA---LRALQDQ---- 296
Cdd:PRK11448 51 ALLGIYEPPCENQHDLLRRLGKEGFLPDEIldvfhklrkignKAVHEFHGDHREALMGLKLAFRLAvwfHRTYGKDwdfk 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 297 ------------IQTAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQL 364
Cdd:PRK11448 131 pgpfvppedpenLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAET 210
|
170 180
....*....|....*....|...
gi 1907204921 365 TQDLQEARKSAEKR---KVMLDE 384
Cdd:PRK11448 211 SQERKQKRKEITDQaakRLELSE 233
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
210-582 |
2.29e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.56 E-value: 2.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 210 ELSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKEaDLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEH 286
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAreaVEDRREEIEELEEEIE-ELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 287 AAALRALQDQIQTAKTqelnmLRE-----------QTSELASELQHRQAEYEELMGQKDDLNSQlQESLRANSRLLEQLQ 355
Cdd:PRK02224 432 EATLRTARERVEEAEA-----LLEagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEE-VEEVEERLERAEDLV 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 356 EIGQEKEQLTQDLQEARKSAEKRKVMLDELAmETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRqeee 435
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKR-ERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSK---- 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 436 lRGQIREEKARTRELENLQHTVEELQAQVhsmdgakgwfeRRLKEAEESLQQQQQEQEETLKLCREEH---AAELKGKD- 511
Cdd:PRK02224 581 -LAELKERIESLERIRTLLAAIADAEDEI-----------ERLREKREALAELNDERRERLAEKRERKrelEAEFDEARi 648
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907204921 512 EELQNVREQLQQAQEERDGHVKTisnlKQEVKDTvdgqriLEKKGSAVLKDLKRQLHLeRKRADKLQERLQ 582
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDE----LREERDD------LQAEIGAVENELEELEEL-RERREALENRVE 708
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
206-455 |
2.44e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 41.60 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 206 LQGLELSEKLKKKQESfcrlqTEKETLFNDSRnKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELRDQRQGE--- 282
Cdd:COG5022 848 IQKFGRSLKAKKRFSL-----LKKETIYLQSA-QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDlie 921
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 283 ----RLEHAAALRALQDQIQTA--------KTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRL 350
Cdd:COG5022 922 nlefKTELIARLKKLLNNIDLEegpsieyvKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 351 LEQLQEIGqekeqltqDLQEARKSAEKRKVMLDELAMETLQEKSQHKE-----ELGAVRLRHEKELLGVRARYE-----R 420
Cdd:COG5022 1002 AELSKQYG--------ALQESTKQLKELPVEVAELQSASKIISSESTElsilkPLQKLKGLLLLENNQLQARYKalklrR 1073
|
250 260 270
....*....|....*....|....*....|....*
gi 1907204921 421 ELRELHEDKKRQEEELRGQIREEKARTRELENLQH 455
Cdd:COG5022 1074 ENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
|
| PRK06975 |
PRK06975 |
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed |
160-277 |
2.68e-03 |
|
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Pssm-ID: 235899 [Multi-domain] Cd Length: 656 Bit Score: 41.24 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 160 RPSAVGEGQGDPPGDVLPTPLAPMPLAEVelkwemereeKKLLWEQL---------QGLELSEKLKKKQESFCRLQTEKE 230
Cdd:PRK06975 294 QPAAAAAAPAPPPNPPATPPEPPARRGRG----------SAALWFVVvvlacaaavGGYALNRKVDRLDQELVQRQQAND 363
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907204921 231 TLFNDSRNKIEELQ------QRKEADLKAQLARTQKLQQELEAANQSLAELRD 277
Cdd:PRK06975 364 AQTAELRVKTEQAQasvhqlDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRD 416
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
26-363 |
4.47e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 26 QLSDELRKNGVELSSLRQKVAYLDKEFSKAQKALSKSKKaqEVEVLLSENEMLQAKLHSQEEdfrlqnstlmaefsklcs 105
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR--KIGEIEKEIEQLEQEEEKLKE------------------ 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 106 QLEQLELENRQLKEGVpgaagAHVDGELLRLQAENTALQKNMAALQERYGKeavrpsavgegqgdppgdvLPTPLAPMPL 185
Cdd:TIGR02169 738 RLEELEEDLSSLEQEI-----ENVKSELKELEARIEELEEDLHKLEEALND-------------------LEARLSHSRI 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 186 AEVELKWEMEREEKKLLWEQLQGLELS-EKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEaDLKAQLARTQKLQQE 264
Cdd:TIGR02169 794 PEIQAELSKLEEEVSRIEARLREIEQKlNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE-NLNGKKEELEEELEE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 265 LEAANQSLAELRDQRQGERLEHAAALRALQDQIQTAKTQ------ELNMLREQTSELASELQH----------------- 321
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQiekkrkRLSELKAKLEALEEELSEiedpkgedeeipeeels 952
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907204921 322 -------RQA-----------------EYEELMGQKDDLNSQLQESLRANSRLLEQLQEIGQEKEQ 363
Cdd:TIGR02169 953 ledvqaeLQRveeeiralepvnmlaiqEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
185-558 |
4.94e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 185 LAEVELKWEMEREEKKLLWEQLQGL--------ELSEKLKKKQESFCRLQtEKETLFNDSRNKIEELQQRK--------- 247
Cdd:PRK03918 309 LREIEKRLSRLEEEINGIEERIKELeekeerleELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKkrltgltpe 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 248 --EADLKAQLARTQKLQQELEAANQSLAELRdQRQGERLEHAAALRALQDQIQTAKTQ-----ELNMLREQTSELA---S 317
Cdd:PRK03918 388 klEKELEELEKAKEEIEEEISKITARIGELK-KEIKELKKAIEELKKAKGKCPVCGRElteehRKELLEEYTAELKrieK 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 318 ELQHRQAEYEELMGQKDDLNSQL--QESLRANSRLLEQLQEIGQEKEQLT-QDLQEARKSAEKRKVMLDELAME--TLQE 392
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEikSLKK 546
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 393 KSQHKEELGAVRLRHEKELLGVRARYERELRELHEDKKRQEEELRGQIRE--------------EKARTRELENLQHTVE 458
Cdd:PRK03918 547 ELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKElepfyneylelkdaEKELEREEKELKKLEE 626
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 459 ELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLCREEHAAELKGKDEELQNVREQLQQAQeerdghvKTISNL 538
Cdd:PRK03918 627 ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK-------KTLEKL 699
|
410 420
....*....|....*....|
gi 1907204921 539 KQEVKDTVDGQRILEKKGSA 558
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKA 719
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
211-356 |
5.55e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 211 LSEKLKKKQESFCRLQTEKETL---FNDSRNKIEELQQRKeADLKAQLARTQKLQQELEAANQSLAELRDQRQGERLEHA 287
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELadlLSLERQGNQDLQDSV-ANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELA 122
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907204921 288 AALRALQDQIQTAKTQ------ELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLqeslraNSRLLEQLQE 356
Cdd:PRK09039 123 QELDSEKQVSARALAQvellnqQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL------NVALAQRVQE 191
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
194-376 |
6.24e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.11 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 194 MEREEKKLLWEQLQGLEL--SEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEAdLKAQLA--RTQKLQQELEAAN 269
Cdd:pfam17380 407 LEEERQRKIQQQKVEMEQirAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVER-LRQQEEerKRKKLELEKEKRD 485
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 270 QSLAELRDQRQGERlEHAAALRALQDQIQTAKTQELNMLREQTSeLASELQHRQAEYEELMGQKDDLNSQLQESLRANSR 349
Cdd:pfam17380 486 RKRAEEQRRKILEK-ELEERKQAMIEEERKRKLLEKEMEERQKA-IYEEERRREAEEERRKQQEMEERRRIQEQMRKATE 563
|
170 180
....*....|....*....|....*..
gi 1907204921 350 LLEQLQEIGQEKEQLTQDLQEARKSAE 376
Cdd:pfam17380 564 ERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
204-426 |
8.51e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 39.61 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 204 EQLQGLELSEKLKKKQesfcrLQTEKEtLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELrDQRQGER 283
Cdd:PHA02562 181 QQIQTLDMKIDHIQQQ-----IKTYNK-NIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL-VMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 284 LEHAAALR----ALQDQIQTAK---------------TQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESL 344
Cdd:PHA02562 254 SAALNKLNtaaaKIKSKIEQFQkvikmyekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFN 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 345 RANSRLLEQLQEIGQEKeqltQDLQEARKSAEKRKVMLDELAMETLqeksQHKEELGAVRlRHEKELLGVRARYERELRE 424
Cdd:PHA02562 334 EQSKKLLELKNKISTNK----QSLITLVDKAKKVKAAIEELQAEFV----DNAEELAKLQ-DELDKIVKTKSELVKEKYH 404
|
..
gi 1907204921 425 LH 426
Cdd:PHA02562 405 RG 406
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
197-583 |
9.28e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 39.77 E-value: 9.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 197 EEKKLLWEQLQGLELSEKLKKKQESFCRLQTEKETLFNDSRNKIEELQQRKEADLKAQLARTQKLQQELEAANQSLAELR 276
Cdd:pfam01576 138 EDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGES 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 277 DQRQGERLEHAAALRALQDQIQtAKTQELNMLREQTSELASELQHRQAEYEELMGQKDDLNSQLQESLRANSRLLEQLQE 356
Cdd:pfam01576 218 TDLQEQIAELQAQIAELRAQLA-KKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRD 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 357 IGQEKEQLTQDLQEARKSAEKRKvmldELAMETLQEKSQHKEELGAVRLRHEKELLGVRARYERELRELHEdkkRQEEEL 436
Cdd:pfam01576 297 LGEELEALKTELEDTLDTTAAQQ----ELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTE---QLEQAK 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907204921 437 RGQIREEKARtrelENLQHTVEELQAQVHSMDGAKGWFERRLKEAEESLQQQQQEQEETLKLcREEHAAELKGKDEELQN 516
Cdd:pfam01576 370 RNKANLEKAK----QALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQ-RAELAEKLSKLQSELES 444
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907204921 517 VREQLQQAQEERDGHVKTISNLKQEVKDTvdgQRILEKKGSAVLKDLKRQLHLERKRADkLQERLQE 583
Cdd:pfam01576 445 VSSLLNEAEGKNIKLSKDVSSLESQLQDT---QELLQEETRQKLNLSTRLRQLEDERNS-LQEQLEE 507
|
|
| |
