|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
127-345 |
3.16e-24 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 3.16e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---------------------------------------------- 114
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1907114259 287 ekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAI 345
Cdd:COG0457 115 --NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
164-407 |
1.08e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 100.47 E-value: 1.08e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 164 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelr 243
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 244 kinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPAN 323
Cdd:COG0457 81 ---------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 324 RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 403
Cdd:COG0457 116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195
|
....
gi 1907114259 404 HWDD 407
Cdd:COG0457 196 LLAL 199
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
195-399 |
1.43e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 91.22 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 195 IALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskp 274
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALY---------------------------------- 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 275 tggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKA 354
Cdd:COG0457 47 --------------NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1907114259 355 FARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG0457 113 LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
134-385 |
2.75e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 88.25 E-value: 2.75e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 214 ALQKLEDARKDYEKVLELEPDNFEATNELRKI-------NQALTSKEnsgpgaaaaaeskpaageskpTGGQQGRQKAIA 286
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIyeqegdwEKAIEVLE---------------------RLLKLGPENAHA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 287 EKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLG 366
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250
....*....|....*....
gi 1907114259 367 KINEAKQDFETVLLLEPGN 385
Cdd:COG2956 227 DPEEALELLRKALELDPSD 245
|
|
| RPAP3_C |
pfam13877 |
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ... |
541-616 |
6.28e-18 |
|
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.
Pssm-ID: 464012 Cd Length: 91 Bit Score: 78.86 E-value: 6.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 541 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIDYKC------IIQSLRKIRpeg 614
Cdd:pfam13877 1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDpalvleILQGLSKVP--- 77
|
..
gi 1907114259 615 RF 616
Cdd:pfam13877 78 RF 79
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
127-379 |
1.08e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.46 E-value: 1.08e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG2956 69 LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqkaia 286
Cdd:COG2956 149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL----------------------------------------- 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 287 ekdlgngFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFArrgtartfLG 366
Cdd:COG2956 188 -------YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA--------LA 252
|
250
....*....|...
gi 1907114259 367 KINEAKQDFETVL 379
Cdd:COG2956 253 DLLERKEGLEAAL 265
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
83-238 |
1.22e-15 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.49 E-value: 1.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 83 KNRIKSYDYDAWAKLDVDRILDELDKEDstHDSLSQESESDEDgiRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMD 162
Cdd:COG4785 26 LAALLFAAVLALAIALADLALALAAAAL--AAAALAAERIDRA--LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALE 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907114259 163 ADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEA 238
Cdd:COG4785 102 LDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
134-339 |
4.43e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 78.50 E-value: 4.43e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 214 ALQKLEDARKDYEKVLELEPDNFEATNElrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdLGNG 293
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNN------------------------------------------------LGNA 189
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907114259 294 FFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAER 339
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDR 235
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
127-238 |
4.14e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.41 E-value: 4.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG3914 105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
90 100 110
....*....|....*....|....*....|..
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEA 238
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
91-233 |
8.03e-14 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 69.22 E-value: 8.03e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 91 YDAWAKLDVDRILDELDKEDSTHDSLSQESESDEDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVL 170
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907114259 171 PTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEP 233
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
137-257 |
1.00e-13 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 72.90 E-value: 1.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 137 LKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQ 216
Cdd:PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1907114259 217 KLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSGP 257
Cdd:PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLV 125
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
127-250 |
1.06e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.19 E-value: 1.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457 69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALT 250
Cdd:COG0457 149 NLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAA 192
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
124-235 |
1.10e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.29 E-value: 1.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 124 EDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203
Cdd:COG4783 28 EKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE 107
|
90 100 110
....*....|....*....|....*....|..
gi 1907114259 204 AYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:COG4783 108 AYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
141-248 |
1.18e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.11 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLED 220
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90 100
....*....|....*....|....*...
gi 1907114259 221 ARKDYEKVLELEPDNFEATNELRKINQA 248
Cdd:COG4235 104 AIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
174-389 |
1.83e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 1.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 174 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltske 253
Cdd:COG3914 84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL------------- 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 254 nsgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 333
Cdd:COG3914 151 -----------------------------------NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907114259 334 YEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAA 389
Cdd:COG3914 196 LEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
112-385 |
3.31e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 72.71 E-value: 3.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 112 THDSLSQESESDEDGIRVDSQK--ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPyNPVLPTNRASAYFRLKKFAVAES 189
Cdd:TIGR00990 103 PADELPEIDESSVANLSEEERKkyAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 190 DCNLAIALSRTYTKAYARRGAA-------------------------------------RFALQKLEDARKDYEKVL--- 229
Cdd:TIGR00990 182 DTTAALELDPDYSKALNRRANAydglgkyadalldltasciidgfrneqsaqaverllkKFAESKAKEILETKPENLpsv 261
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 230 ------------ELEPDNFEATNELRK------INQALTSKEN-SGPGAAAAAESKpaagESKPTGGQQGRQKAIAEKDL 290
Cdd:TIGR00990 262 tfvgnylqsfrpKPRPAGLEDSNELDEetgngqLQLGLKSPESkADESYEEAARAF----EKALDLGKLGEKEAIALNLR 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 291 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINE 370
Cdd:TIGR00990 338 GTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQ 417
|
330
....*....|....*
gi 1907114259 371 AKQDFETVLLLEPGN 385
Cdd:TIGR00990 418 AGKDYQKSIDLDPDF 432
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
204-383 |
7.37e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 68.40 E-value: 7.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 204 AYARRGAARFALQKLEDARKDYEkvlelepDNFEATNELRKINQALTSkENSGPGAAAAAESKPAAGESKPTGGQQGRQK 283
Cdd:COG4785 1 LYALALALLLALALAAAAASKAA-------ILLAALLFAAVLALAIAL-ADLALALAAAALAAAALAAERIDRALALPDL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 363
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152
|
170 180
....*....|....*....|
gi 1907114259 364 FLGKINEAKQDFETVLLLEP 383
Cdd:COG4785 153 YLGRYELAIADLEKALELDP 172
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
295-430 |
1.83e-12 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 69.05 E-value: 1.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:PLN03088 13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 375 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 430
Cdd:PLN03088 93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
131-249 |
2.82e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.44 E-value: 2.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 131 SQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGA 210
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 1907114259 211 ARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
124-249 |
5.37e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 5.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 124 EDGIRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTK 203
Cdd:COG2956 100 EKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCAR 179
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907114259 204 AYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
204-385 |
6.23e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 63.29 E-value: 6.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 204 AYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqk 283
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------------------------------------- 47
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 284 aiaekdlgngFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 363
Cdd:COG4783 48 ----------LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
|
170 180
....*....|....*....|..
gi 1907114259 364 FLGKINEAKQDFETVLLLEPGN 385
Cdd:COG4783 118 ALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
144-234 |
7.84e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 61.72 E-value: 7.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAEsDCNLAIALSRTYTKAYARRGAARFALQKLEDARK 223
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1907114259 224 DYEKVLELEPD 234
Cdd:COG3063 81 YLERALELDPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
282-399 |
1.39e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 282 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907114259 362 RTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
203-408 |
1.81e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 1.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 203 KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrq 282
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALF------------------------------------------ 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 283 kaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTAR 362
Cdd:COG3914 117 ------NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1907114259 363 TFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDDV 408
Cdd:COG3914 191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFA---LRQACDWEVY 233
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
278-407 |
1.90e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.94 E-value: 1.90e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 357
Cdd:COG3914 72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1907114259 358 RGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA---LQDLGRLEE 198
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
290-397 |
4.78e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 60.79 E-value: 4.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90 100
....*....|....*....|....*...
gi 1907114259 370 EAKQDFETVLLLEPGNKQAATELSRIKK 397
Cdd:COG4235 103 EAIAAWQKLLALLPADAPARLLEASIAE 130
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
282-383 |
7.11e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 60.74 E-value: 7.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 282 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:COG5010 52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131
|
90 100
....*....|....*....|..
gi 1907114259 362 RTFLGKINEAKQDFETVLLLEP 383
Cdd:COG5010 132 LLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
174-348 |
1.21e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 1.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 174 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEAtnelrkinqaltske 253
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--------------- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 254 nsgpgaaaaaeskpaageskptggqqgrqkaiaEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 333
Cdd:COG4783 75 ---------------------------------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121
|
170
....*....|....*
gi 1907114259 334 YEEAERDCTQAIVLD 348
Cdd:COG4783 122 PDEAIAALEKALELD 136
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
133-388 |
4.67e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.79 E-value: 4.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 133 KALVLKekGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAAR 212
Cdd:TIGR02917 194 DALLLK--GDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 213 FALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKENSgpgaaaaaeskpaageskptGGQQGRQKAIAEKD--- 289
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA--------------------YQYLNQILKYAPNShqa 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 290 ---LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLG 366
Cdd:TIGR02917 332 rrlLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411
|
250 260
....*....|....*....|..
gi 1907114259 367 KINEAKQDFETVLLLEPGNKQA 388
Cdd:TIGR02917 412 DPSEAIADLETAAQLDPELGRA 433
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
278-401 |
8.11e-10 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 61.54 E-value: 8.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 278 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAdRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 357
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1907114259 358 RGTARTFLGKINEAKQDFeTVLLLEPG--NKQAATELSRIKKELIE 401
Cdd:TIGR00990 200 RANAYDGLGKYADALLDL-TASCIIDGfrNEQSAQAVERLLKKFAE 244
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
167-348 |
9.72e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 59.16 E-value: 9.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 167 NPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYT------KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 240
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALalpdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYN 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 241 elrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALL 320
Cdd:COG4785 112 ------------------------------------------------NRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
170 180
....*....|....*....|....*...
gi 1907114259 321 PANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALELD 171
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
302-407 |
4.17e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.01 E-value: 4.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 302 QAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLL 381
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|....*.
gi 1907114259 382 EPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG4235 81 DPDNPEALYLLGLA---AFQQGDYAE 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
294-383 |
6.04e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 6.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 294 FFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERdCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQ 373
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 1907114259 374 DFETVLLLEP 383
Cdd:COG3063 81 YLERALELDP 90
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
290-406 |
6.93e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.43 E-value: 6.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127
|
90 100 110
....*....|....*....|....*....|....*..
gi 1907114259 370 EAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWD 406
Cdd:COG2956 128 KAIEVLERLLKLGPENAHAYCELAEL---YLEQGDYD 161
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
134-401 |
1.23e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 58.07 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARF 213
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 214 ALQKLEDARKDYEKVLELEPDNFEATNELrkinQALTSKENSgpgaaaaaeskpaaGESKPTGGQQGRQKAIAEKDLGNg 293
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQL----GVTQYKEGS--------------IASSMATFRRCKKNFPEAPDVYN- 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 294 FFKE-----GKYEQAIECYTRGIAADR------TNALLPANRAMAYLK-IQRYEEAERDCTQAIVLDGSYSKAFARRGTA 361
Cdd:TIGR00990 472 YYGEllldqNKFDEAIEKFDTAIELEKetkpmyMNVLPLINKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQL 551
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1907114259 362 RTFLGKINEAKQDFETvlllepgnkqaATELSRIKKELIE 401
Cdd:TIGR00990 552 LLQQGDVDEALKLFER-----------AAELARTEGELVQ 580
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
152-238 |
7.86e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 7.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 152 EAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLEL 231
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*..
gi 1907114259 232 EPDNFEA 238
Cdd:COG4235 81 DPDNPEA 87
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
312-388 |
1.02e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 1.02e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907114259 312 AADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 388
Cdd:COG4785 67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
127-254 |
2.59e-07 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 52.32 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG0457 103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALTSKEN 254
Cdd:COG0457 183 LGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
127-240 |
1.93e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 50.76 E-value: 1.93e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYA 206
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHS 218
|
90 100 110
....*....|....*....|....*....|....
gi 1907114259 207 RRGAARFALQKLEDARKDYEKVLELEPDNFEATN 240
Cdd:COG3914 219 NLLFALRQACDWEVYDRFEELLAALARGPSELSP 252
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
134-167 |
3.02e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.97 E-value: 3.02e-06
10 20 30
....*....|....*....|....*....|....
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
162-348 |
3.51e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.26 E-value: 3.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 162 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNe 241
Cdd:COG5010 14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 242 lrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLP 321
Cdd:COG5010 93 -----------------------------------------------NLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
|
170 180
....*....|....*....|....*..
gi 1907114259 322 ANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG5010 126 SNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
309-406 |
4.32e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 4.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 309 RGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 388
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124
|
90
....*....|....*...
gi 1907114259 389 ATELSRIkkeLIEKGHWD 406
Cdd:COG5010 125 YSNLAAL---LLSLGQDD 139
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
134-167 |
5.59e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 5.59e-06
10 20 30
....*....|....*....|....*....|....
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYN 167
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
141-396 |
6.70e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 49.31 E-value: 6.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLED 220
Cdd:TIGR02917 302 GASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEK 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 221 ARKDYEKVLELEPDNFEATNELRkinqalTSKENSGpgaaaaaeskpaagesKPTGGQQGRQKAIA-EKDLGN------- 292
Cdd:TIGR02917 382 AAEYLAKATELDPENAAARTQLG------ISKLSQG----------------DPSEAIADLETAAQlDPELGRadlllil 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 293 GFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAK 372
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
250 260
....*....|....*....|....
gi 1907114259 373 QDFETVLLLEPGNKQAATELSRIK 396
Cdd:TIGR02917 520 QRFEKVLTIDPKNLRAILALAGLY 543
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
203-235 |
6.74e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 6.74e-06
10 20 30
....*....|....*....|....*....|...
gi 1907114259 203 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
177-249 |
1.33e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 1.33e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907114259 177 AYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKdYEKVLELEPDNFEATNELRKINQAL 249
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
141-181 |
2.05e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.69 E-value: 2.05e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1907114259 141 GNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRL 181
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
290-407 |
2.74e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.26 E-value: 2.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 290 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 369
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110
....*....|....*....|....*....|....*...
gi 1907114259 370 EAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 407
Cdd:COG2956 94 RAEELLEKLLELDPDDAEALRLLAEI---YEQEGDWEK 128
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
144-393 |
4.52e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 4.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARK 223
Cdd:TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 224 DYEKVLELEPDNFEATNEL--------------RKINQALTSKEN---SGPGAAAAAESKPAAGESKPTGGQQGRQK--- 283
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLadayavmknyakaiTSLKRALELKPDnteAQIGLAQLLLAAKRTESAKKIAKSLQKQHpka 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLpANRAMAYLKIQRYEEAERdcTQAIVLDGSYSKAFARRGTART 363
Cdd:TIGR02917 703 ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNA-IKLHRALLASGNTAEAVK--TLEAWLKTHPNDAVLRTALAEL 779
|
250 260 270
....*....|....*....|....*....|..
gi 1907114259 364 FL--GKINEAKQDFETVLLLEPGNKQAATELS 393
Cdd:TIGR02917 780 YLaqKDYDKAIKHYQTVVKKAPDNAVVLNNLA 811
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
327-399 |
6.28e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.08 E-value: 6.28e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907114259 327 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQdFETVLLLEPGNKQAATELSRIKKEL 399
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
127-198 |
1.02e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.31 E-value: 1.02e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907114259 127 IRVDSQKALVLKEKGNKYFKQGKYDEAIEcYTKGMDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALS 198
Cdd:COG3063 19 LELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELD 89
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
203-235 |
1.27e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 1.27e-04
10 20 30
....*....|....*....|....*....|...
gi 1907114259 203 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 235
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
211-350 |
2.35e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 211 ARFALQKLEDARKDYEKVLELEPDNFEATNELrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdl 290
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------------------------------------------ 32
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 291 GNGFFKEGKYEQAIEcYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGS 350
Cdd:COG3063 33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
144-389 |
3.46e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.92 E-value: 3.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 144 YFKQGKYDEAIECYT-KGMDADPYNPVLPTNRASAYFRLKKFAVAESdcNLAIALSRTYTKAYARRGAARFALQ--KLED 220
Cdd:TIGR02917 100 YLLQGKFQQVLDELPgKTLLDDEGAAELLALRGLAYLGLGQLELAQK--SYEQALAIDPRSLYAKLGLAQLALAenRFDE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 221 ARKDYEKVLELEPDNFEATNELRKINQALtskensgpgaaaaaeskpaageskptggqqgrqkaiaekdlgngffkeGKY 300
Cdd:TIGR02917 178 ARALIDEVLTADPGNVDALLLKGDLLLSL------------------------------------------------GNI 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 301 EQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAErdctqaivldgsyskafarrgtartflgkineakQDFETVLL 380
Cdd:TIGR02917 210 ELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE----------------------------------KHADALLK 255
|
....*....
gi 1907114259 381 LEPGNKQAA 389
Cdd:TIGR02917 256 KAPNSPLAH 264
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
194-348 |
3.75e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 194 AIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNfeatnelrkinqaltskensgpgaaaaaeskpaagesk 273
Cdd:COG4235 9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------------------------------------- 50
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907114259 274 ptggqqgrqkAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLD 348
Cdd:COG4235 51 ----------ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
291-330 |
4.11e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.22 E-value: 4.11e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1907114259 291 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLK 330
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
203-234 |
5.42e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 5.42e-04
10 20 30
....*....|....*....|....*....|..
gi 1907114259 203 KAYARRGAARFALQKLEDARKDYEKVLELEPD 234
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
294-397 |
5.52e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 294 FFKEGKYEQAIECYTRGIAADRTNALLPA---NRAMAYLKIQRYEEAERDCTQAIVLDGSYSK---AFARRGTARTFLGK 367
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90 100 110
....*....|....*....|....*....|
gi 1907114259 368 INEAKQDFETVLLLEPGNKQAATELSRIKK 397
Cdd:COG1729 83 YDKARATLEELIKKYPDSEAAKEARARLAR 112
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
284-317 |
5.60e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 5.60e-04
10 20 30
....*....|....*....|....*....|....
gi 1907114259 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 317
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
134-165 |
5.81e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 37.50 E-value: 5.81e-04
10 20 30
....*....|....*....|....*....|..
gi 1907114259 134 ALVLKEKGNKYFKQGKYDEAIECYTKGMDADP 165
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
141-385 |
6.03e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.15 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 141 GNKYFKQGKYDEAIECYTK----GMDADPYNPVLptnrASAYFRLKKF--AVAESDcNLAIALSRTYTKAYARRGAARFA 214
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKalslGYPKNQVLPLL----ARAYLLQGKFqqVLDELP-GKTLLDDEGAAELLALRGLAYLG 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 215 LQKLEDARKDYEKVLELEPDNFEAtnelrKINQALTSKENSGPGAAAAAESKPAAGESKPTggqqgrqKAIAEKdlGNGF 294
Cdd:TIGR02917 138 LGQLELAQKSYEQALAIDPRSLYA-----KLGLAQLALAENRFDEARALIDEVLTADPGNV-------DALLLK--GDLL 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 295 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 374
Cdd:TIGR02917 204 LSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283
|
250
....*....|.
gi 1907114259 375 FETVLLLEPGN 385
Cdd:TIGR02917 284 LQDALKSAPEY 294
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
284-317 |
1.01e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 1.01e-03
10 20 30
....*....|....*....|....*....|....
gi 1907114259 284 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 317
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
129-245 |
1.08e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 1.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 129 VDSQKALVLKEKGNKYFKQGKYDEAIECYTKGMDADPYNPVLPTNRASAYFRLKKFAVAesdcnLAIA---LSRTYTKA- 204
Cdd:TIGR02917 392 LDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKA-----LAAAkklEKKQPDNAs 466
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1907114259 205 -YARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKI 245
Cdd:TIGR02917 467 lHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI 508
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
323-351 |
3.32e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 3.32e-03
10 20
....*....|....*....|....*....
gi 1907114259 323 NRAMAYLKIQRYEEAERDCTQAIVLDGSY 351
Cdd:pfam00515 6 NLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
209-249 |
6.35e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 34.75 E-value: 6.35e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1907114259 209 GAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 249
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
144-247 |
7.07e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 38.30 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907114259 144 YFKQGKYDEAIECYTKGMDADPYNPVLPTNR---ASAYFRLKKFAVAESDcnLAIALSRTYTKAYA-RRGAARFALQKLE 219
Cdd:COG2976 100 AVDAGDLDKAAAQLQWVLDNAKDPALKALARlrlARVLLAQKKYDEALAT--LDAVKPEAFAALYAeLRGDILLAQGDKA 177
|
90 100
....*....|....*....|....*....
gi 1907114259 220 DARKDYEKVLELEPDNFEATNELR-KINQ 247
Cdd:COG2976 178 EARAAYQKALAALPEDAPLRQLLQmKLDD 206
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