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Conserved domains on  [gi|1907110679|ref|XP_036015125|]
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oncostatin-M-specific receptor subunit beta isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LIFR_D2 super family cl39403
Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding ...
 30-137 1.13e-19

Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding module 1 (CBM1) found in Leukemia inhibitory factor receptor (LIFR) and OSM receptors (OSMR). LIFR has an extracellular region with a modular structure containing two cytokine-binding modules (CBM) separated by an Ig-like domain and followed by three membrane-proximal fibronectin type-III (FNIII) domains. The D2 domain in CBM1 shows structural similarity to the corresponding CBM domains of both gp130 and IL-6Ralpha because it contains conserved structural features like the WSXWS motif. The WSXWS motif in cytokine receptors is a molecular switch involved in receptor activation.


The actual alignment was detected with superfamily member pfam17971:

Pssm-ID: 375455  Cd Length: 114  Bit Score: 85.20  E-value: 1.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679  30 LPLTPEIHKVSFQLKLQEVNLEWTVP--ALTHEeLNMIFQIEISRLNISNTIWVENYSTTVKREEAV-RWNWTSDIPLEC 106
Cdd:pfam17971   5 IPDTPQILNLTADFSTSTLHLKWNDKgsAFPYH-SNVIWEIKVLRKEKMEIVTLVTYNTTLNGKDTVhHWNWTSDMPLEC 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 107 VKHFIRIRALVDDTKSLPQSSWGNWSSWKEV 137
Cdd:pfam17971  84 TSHSVRIRCYIDDVHFSGPKEWSEWSPLKNI 114
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 622-730 1.22e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


:

Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 47.49  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 622 PLVNPKVEIpySTPNSFVLRW--PDYDSdfqaGFIKGYLVYVKSKEmqcNQPWErtllpdnsvlcKYDINGSETKTLTVE 699
Cdd:cd00063     3 PPTNLRVTD--VTSTSVTLSWtpPEDDG----GPITGYVVEYREKG---SGDWK-----------EVEVTPGSETSYTLT 62

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 700 NLQPESLYEFFVTPYTSAGPGPNETFTKVTT 730
Cdd:cd00063    63 GLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
332-413 1.01e-04

Fibronectin type III domain;


:

Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 42.02  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 332 APQDVTLKIIGATKANMTWKVHSHGN----NYTLLCQVKLQYGEVIHEHNVSVHMSanYLFSDLDPDTKYKAFVRCASAN 407
Cdd:pfam00041   2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitGYEVEYRPKNSGEPWNEITVPGTTTS--VTLTGLKPGTEYEVRVQAVNGG 79


                  ....*.
gi 1907110679 408 HFWKWS 413
Cdd:pfam00041  80 GEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 437-512 6.27e-03

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


:

Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 36.82  E-value: 6.27e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907110679  437 VWSENGRRIVTLFWKPLLKSQANGKIISYniVVENEAKPTESEHYCVWAPALSTNLSlDLQP---YKIRITANNSMGAS 512
Cdd:smart00060   8 RVTDVTSTSVTLSWEPPPDDGITGYIVGY--RVEYREEGSEWKEVNVTPSSTSYTLT-GLKPgteYEFRVRAVNGAGEG 83
 
Name Accession Description Interval E-value
LIFR_D2 pfam17971
Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding ...
 30-137 1.13e-19

Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding module 1 (CBM1) found in Leukemia inhibitory factor receptor (LIFR) and OSM receptors (OSMR). LIFR has an extracellular region with a modular structure containing two cytokine-binding modules (CBM) separated by an Ig-like domain and followed by three membrane-proximal fibronectin type-III (FNIII) domains. The D2 domain in CBM1 shows structural similarity to the corresponding CBM domains of both gp130 and IL-6Ralpha because it contains conserved structural features like the WSXWS motif. The WSXWS motif in cytokine receptors is a molecular switch involved in receptor activation.


Pssm-ID: 375455  Cd Length: 114  Bit Score: 85.20  E-value: 1.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679  30 LPLTPEIHKVSFQLKLQEVNLEWTVP--ALTHEeLNMIFQIEISRLNISNTIWVENYSTTVKREEAV-RWNWTSDIPLEC 106
Cdd:pfam17971   5 IPDTPQILNLTADFSTSTLHLKWNDKgsAFPYH-SNVIWEIKVLRKEKMEIVTLVTYNTTLNGKDTVhHWNWTSDMPLEC 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 107 VKHFIRIRALVDDTKSLPQSSWGNWSSWKEV 137
Cdd:pfam17971  84 TSHSVRIRCYIDDVHFSGPKEWSEWSPLKNI 114
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 622-730 1.22e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 47.49  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 622 PLVNPKVEIpySTPNSFVLRW--PDYDSdfqaGFIKGYLVYVKSKEmqcNQPWErtllpdnsvlcKYDINGSETKTLTVE 699
Cdd:cd00063     3 PPTNLRVTD--VTSTSVTLSWtpPEDDG----GPITGYVVEYREKG---SGDWK-----------EVEVTPGSETSYTLT 62

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 700 NLQPESLYEFFVTPYTSAGPGPNETFTKVTT 730
Cdd:cd00063    63 GLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
332-413 1.01e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 42.02  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 332 APQDVTLKIIGATKANMTWKVHSHGN----NYTLLCQVKLQYGEVIHEHNVSVHMSanYLFSDLDPDTKYKAFVRCASAN 407
Cdd:pfam00041   2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitGYEVEYRPKNSGEPWNEITVPGTTTS--VTLTGLKPGTEYEVRVQAVNGG 79


                  ....*.
gi 1907110679 408 HFWKWS 413
Cdd:pfam00041  80 GEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 622-720 1.75e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.06  E-value: 1.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679  622 PLVNPKVEIPYSTPNSFVLRW--PDYDSDfqagfiKGYLVYVKSKEMQCNQPWERTLLPDNsvlckydingseTKTLTVE 699
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWepPPDDGI------TGYIVGYRVEYREEGSEWKEVNVTPS------------STSYTLT 62

                           90       100
                   ....*....|....*....|.
gi 1907110679  700 NLQPESLYEFFVTPYTSAGPG 720
Cdd:smart00060  63 GLKPGTEYEFRVRAVNGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 330-422 3.16e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 40.56  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 330 PKAPQDVTLKIIGATKANMTWKVHSHGN----NYTLlcQVKLQYGEVIHEHNVSVHMSANYLFSDLDPDTKYKAFVRCAS 405
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGgpitGYVV--EYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78

                          90
                  ....*....|....*...
gi 1907110679 406 ANHfwkWSDW-TQKEFST 422
Cdd:cd00063    79 GGG---ESPPsESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 330-403 8.01e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 39.13  E-value: 8.01e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907110679  330 PKAPQDVTLKIIGATKANMTWKVHSHGNNYTLLCQVKLQYGEVIHE-HNVSVHMSAN-YLFSDLDPDTKYKAFVRC 403
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEwKEVNVTPSSTsYTLTGLKPGTEYEFRVRA 76
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 437-512 6.27e-03

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 36.82  E-value: 6.27e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907110679  437 VWSENGRRIVTLFWKPLLKSQANGKIISYniVVENEAKPTESEHYCVWAPALSTNLSlDLQP---YKIRITANNSMGAS 512
Cdd:smart00060   8 RVTDVTSTSVTLSWEPPPDDGITGYIVGY--RVEYREEGSEWKEVNVTPSSTSYTLT-GLKPgteYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
634-721 8.32e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 36.24  E-value: 8.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 634 TPNSFVLRW---PDYDSDfqagfIKGYLVYVKSKEMqcNQPWertllpdnsvlcKYDINGSETKTLTVENLQPESLYEFF 710
Cdd:pfam00041  12 TSTSLTVSWtppPDGNGP-----ITGYEVEYRPKNS--GEPW------------NEITVPGTTTSVTLTGLKPGTEYEVR 72

                          90
                  ....*....|.
gi 1907110679 711 VTPYTSAGPGP 721
Cdd:pfam00041  73 VQAVNGGGEGP 83
 
Name Accession Description Interval E-value
LIFR_D2 pfam17971
Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding ...
 30-137 1.13e-19

Leukemia inhibitory factor receptor D2 domain; This is the D2 domain in cytokine-binding module 1 (CBM1) found in Leukemia inhibitory factor receptor (LIFR) and OSM receptors (OSMR). LIFR has an extracellular region with a modular structure containing two cytokine-binding modules (CBM) separated by an Ig-like domain and followed by three membrane-proximal fibronectin type-III (FNIII) domains. The D2 domain in CBM1 shows structural similarity to the corresponding CBM domains of both gp130 and IL-6Ralpha because it contains conserved structural features like the WSXWS motif. The WSXWS motif in cytokine receptors is a molecular switch involved in receptor activation.


Pssm-ID: 375455  Cd Length: 114  Bit Score: 85.20  E-value: 1.13e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679  30 LPLTPEIHKVSFQLKLQEVNLEWTVP--ALTHEeLNMIFQIEISRLNISNTIWVENYSTTVKREEAV-RWNWTSDIPLEC 106
Cdd:pfam17971   5 IPDTPQILNLTADFSTSTLHLKWNDKgsAFPYH-SNVIWEIKVLRKEKMEIVTLVTYNTTLNGKDTVhHWNWTSDMPLEC 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 107 VKHFIRIRALVDDTKSLPQSSWGNWSSWKEV 137
Cdd:pfam17971  84 TSHSVRIRCYIDDVHFSGPKEWSEWSPLKNI 114
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 622-730 1.22e-06

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 47.49  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 622 PLVNPKVEIpySTPNSFVLRW--PDYDSdfqaGFIKGYLVYVKSKEmqcNQPWErtllpdnsvlcKYDINGSETKTLTVE 699
Cdd:cd00063     3 PPTNLRVTD--VTSTSVTLSWtpPEDDG----GPITGYVVEYREKG---SGDWK-----------EVEVTPGSETSYTLT 62

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1907110679 700 NLQPESLYEFFVTPYTSAGPGPNETFTKVTT 730
Cdd:cd00063    63 GLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
fn3 pfam00041
Fibronectin type III domain;
332-413 1.01e-04

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 42.02  E-value: 1.01e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 332 APQDVTLKIIGATKANMTWKVHSHGN----NYTLLCQVKLQYGEVIHEHNVSVHMSanYLFSDLDPDTKYKAFVRCASAN 407
Cdd:pfam00041   2 APSNLTVTDVTSTSLTVSWTPPPDGNgpitGYEVEYRPKNSGEPWNEITVPGTTTS--VTLTGLKPGTEYEVRVQAVNGG 79


                  ....*.
gi 1907110679 408 HFWKWS 413
Cdd:pfam00041  80 GEGPPS 85
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 622-720 1.75e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 41.06  E-value: 1.75e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679  622 PLVNPKVEIPYSTPNSFVLRW--PDYDSDfqagfiKGYLVYVKSKEMQCNQPWERTLLPDNsvlckydingseTKTLTVE 699
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWepPPDDGI------TGYIVGYRVEYREEGSEWKEVNVTPS------------STSYTLT 62

                           90       100
                   ....*....|....*....|.
gi 1907110679  700 NLQPESLYEFFVTPYTSAGPG 720
Cdd:smart00060  63 GLKPGTEYEFRVRAVNGAGEG 83
FN3 cd00063
Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein ...
 330-422 3.16e-04

Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.


Pssm-ID: 238020 [Multi-domain]  Cd Length: 93  Bit Score: 40.56  E-value: 3.16e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 330 PKAPQDVTLKIIGATKANMTWKVHSHGN----NYTLlcQVKLQYGEVIHEHNVSVHMSANYLFSDLDPDTKYKAFVRCAS 405
Cdd:cd00063     1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGgpitGYVV--EYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVN 78

                          90
                  ....*....|....*...
gi 1907110679 406 ANHfwkWSDW-TQKEFST 422
Cdd:cd00063    79 GGG---ESPPsESVTVTT 93
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 330-403 8.01e-04

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 39.13  E-value: 8.01e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907110679  330 PKAPQDVTLKIIGATKANMTWKVHSHGNNYTLLCQVKLQYGEVIHE-HNVSVHMSAN-YLFSDLDPDTKYKAFVRC 403
Cdd:smart00060   1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEwKEVNVTPSSTsYTLTGLKPGTEYEFRVRA 76
FN3 smart00060
Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, ...
 437-512 6.27e-03

Fibronectin type 3 domain; One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.


Pssm-ID: 214495 [Multi-domain]  Cd Length: 83  Bit Score: 36.82  E-value: 6.27e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907110679  437 VWSENGRRIVTLFWKPLLKSQANGKIISYniVVENEAKPTESEHYCVWAPALSTNLSlDLQP---YKIRITANNSMGAS 512
Cdd:smart00060   8 RVTDVTSTSVTLSWEPPPDDGITGYIVGY--RVEYREEGSEWKEVNVTPSSTSYTLT-GLKPgteYEFRVRAVNGAGEG 83
fn3 pfam00041
Fibronectin type III domain;
634-721 8.32e-03

Fibronectin type III domain;


Pssm-ID: 394996 [Multi-domain]  Cd Length: 85  Bit Score: 36.24  E-value: 8.32e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907110679 634 TPNSFVLRW---PDYDSDfqagfIKGYLVYVKSKEMqcNQPWertllpdnsvlcKYDINGSETKTLTVENLQPESLYEFF 710
Cdd:pfam00041  12 TSTSLTVSWtppPDGNGP-----ITGYEVEYRPKNS--GEPW------------NEITVPGTTTSVTLTGLKPGTEYEVR 72

                          90
                  ....*....|.
gi 1907110679 711 VTPYTSAGPGP 721
Cdd:pfam00041  73 VQAVNGGGEGP 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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