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Conserved domains on  [gi|1907092062|ref|XP_036013724|]
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F-box and WD-40 domain protein 17 isoform X6 [Mus musculus]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1903264)

WD40 repeat domain-containing protein folds into a beta-propeller structure and functions as a scaffold, providing a platform for the interaction and assembly of several proteins into a signalosome; similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

CATH:  2.130.10.10
Gene Ontology:  GO:0005515
PubMed:  30069656|29026209
SCOP:  4002744

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl43672
WD40 repeat [General function prediction only];
16-330 7.20e-05

WD40 repeat [General function prediction only];


The actual alignment was detected with superfamily member COG2319:

Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 44.52  E-value: 7.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  16 GHTGMIDQLAYvSPheyrfdeGARSVVcTVSSDCTVRAWDLQEGSEIWSSAVQPAPlVNVVAY-PQLQLVVTVDIQGLIM 94
Cdd:COG2319   118 GHTGAVRSVAF-SP-------DGKTLA-SGSADGTVRLWDLATGKLLRTLTGHSGA-VTSVAFsPDGKLLASGSDDGTVR 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  95 GWKAKTGSEWAFFSLPAScSSMEACDHPEGPFLLVACDEGT--LYTMTVPQLQVVSRVPTFPHSSVSLtcSPDTQWVfVS 172
Cdd:COG2319   188 LWDLATGKLLRTLTGHTG-AVRSVAFSPDGKLLASGSADGTvrLWDLATGKLLRTLTGHSGSVRSVAF--SPDGRLL-AS 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 173 AqGSDLGPKVFytqpllHPSEDRLPVSTTLPIRLSSRACWAPDeaARLMVIHRDDGGVHLV-ITTFELKATKSRDRLSIL 251
Cdd:COG2319   264 G-SADGTVRLW------DLATGELLRTLTGHSGGVNSVAFSPD--GKLLASGSDDGTVRLWdLATGKLLRTLTGHTGAVR 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 252 A-------QQLASfhlpdtmtphlmqGHGSQTILLTSRSElvlftihGLQLMAFQDHQRPITSMWVDPD--RVITAALDL 322
Cdd:COG2319   335 SvafspdgKTLAS-------------GSDDGTVRLWDLAT-------GELLRTLTGHTGAVTSVAFSPDgrTLASGSADG 394


                  ....*...
gi 1907092062 323 SLRvyVWN 330
Cdd:COG2319   395 TVR--LWD 400
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
16-330 7.20e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 44.52  E-value: 7.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  16 GHTGMIDQLAYvSPheyrfdeGARSVVcTVSSDCTVRAWDLQEGSEIWSSAVQPAPlVNVVAY-PQLQLVVTVDIQGLIM 94
Cdd:COG2319   118 GHTGAVRSVAF-SP-------DGKTLA-SGSADGTVRLWDLATGKLLRTLTGHSGA-VTSVAFsPDGKLLASGSDDGTVR 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  95 GWKAKTGSEWAFFSLPAScSSMEACDHPEGPFLLVACDEGT--LYTMTVPQLQVVSRVPTFPHSSVSLtcSPDTQWVfVS 172
Cdd:COG2319   188 LWDLATGKLLRTLTGHTG-AVRSVAFSPDGKLLASGSADGTvrLWDLATGKLLRTLTGHSGSVRSVAF--SPDGRLL-AS 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 173 AqGSDLGPKVFytqpllHPSEDRLPVSTTLPIRLSSRACWAPDeaARLMVIHRDDGGVHLV-ITTFELKATKSRDRLSIL 251
Cdd:COG2319   264 G-SADGTVRLW------DLATGELLRTLTGHSGGVNSVAFSPD--GKLLASGSDDGTVRLWdLATGKLLRTLTGHTGAVR 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 252 A-------QQLASfhlpdtmtphlmqGHGSQTILLTSRSElvlftihGLQLMAFQDHQRPITSMWVDPD--RVITAALDL 322
Cdd:COG2319   335 SvafspdgKTLAS-------------GSDDGTVRLWDLAT-------GELLRTLTGHTGAVTSVAFSPDgrTLASGSADG 394


                  ....*...
gi 1907092062 323 SLRvyVWN 330
Cdd:COG2319   395 TVR--LWD 400
 
Name Accession Description Interval E-value
WD40 COG2319
WD40 repeat [General function prediction only];
16-330 7.20e-05

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 44.52  E-value: 7.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  16 GHTGMIDQLAYvSPheyrfdeGARSVVcTVSSDCTVRAWDLQEGSEIWSSAVQPAPlVNVVAY-PQLQLVVTVDIQGLIM 94
Cdd:COG2319   118 GHTGAVRSVAF-SP-------DGKTLA-SGSADGTVRLWDLATGKLLRTLTGHSGA-VTSVAFsPDGKLLASGSDDGTVR 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  95 GWKAKTGSEWAFFSLPAScSSMEACDHPEGPFLLVACDEGT--LYTMTVPQLQVVSRVPTFPHSSVSLtcSPDTQWVfVS 172
Cdd:COG2319   188 LWDLATGKLLRTLTGHTG-AVRSVAFSPDGKLLASGSADGTvrLWDLATGKLLRTLTGHSGSVRSVAF--SPDGRLL-AS 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 173 AqGSDLGPKVFytqpllHPSEDRLPVSTTLPIRLSSRACWAPDeaARLMVIHRDDGGVHLV-ITTFELKATKSRDRLSIL 251
Cdd:COG2319   264 G-SADGTVRLW------DLATGELLRTLTGHSGGVNSVAFSPD--GKLLASGSDDGTVRLWdLATGKLLRTLTGHTGAVR 334

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062 252 A-------QQLASfhlpdtmtphlmqGHGSQTILLTSRSElvlftihGLQLMAFQDHQRPITSMWVDPD--RVITAALDL 322
Cdd:COG2319   335 SvafspdgKTLAS-------------GSDDGTVRLWDLAT-------GELLRTLTGHTGAVTSVAFSPDgrTLASGSADG 394


                  ....*...
gi 1907092062 323 SLRvyVWN 330
Cdd:COG2319   395 TVR--LWD 400
WD40 COG2319
WD40 repeat [General function prediction only];
14-173 5.31e-04

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 41.82  E-value: 5.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  14 ISGHTGMIDQLAYvSPheyrfdeGARSVVcTVSSDCTVRAWDLQEGSEIWSSAVQPAPlVNVVAY-PQLQLVVTVDIQGL 92
Cdd:COG2319   242 LTGHSGSVRSVAF-SP-------DGRLLA-SGSADGTVRLWDLATGELLRTLTGHSGG-VNSVAFsPDGKLLASGSDDGT 311

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907092062  93 IMGWKAKTGSEwaFFSLPASCSSMEACD-HPEGPFLLVACDEGTLYTMTVPQLQVVSRVPTFPHSSVSLTCSPDTQWVfV 171
Cdd:COG2319   312 VRLWDLATGKL--LRTLTGHTGAVRSVAfSPDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPDGRTL-A 388


                  ..
gi 1907092062 172 SA 173
Cdd:COG2319   389 SG 390
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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