|
Name |
Accession |
Description |
Interval |
E-value |
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
95-629 |
7.51e-14 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 76.98 E-value: 7.51e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 95 ELEELDKQNQEATKHVILIKDQLSKQQSEGDSV------IKKLKEELAGEKqrtHQLEDDKMNIIKELTVQKEKLTHSEQ 168
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLnnkyndLKKQKEELENEL---NLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 169 ALSDLQLTKQK---LEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDD---- 241
Cdd:TIGR04523 202 LLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEqnnk 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 242 LLKERETQVQNLKQNLSEVEqlNEHLEQVAFDLRTENEELLEAYEEVRNQLEESvagNKQIS--------LEKTAM-LEW 312
Cdd:TIGR04523 282 KIKELEKQLNQLKSEISDLN--NQKEQDWNKELKSELKNQEKKLEEIQNQISQN---NKIISqlneqisqLKKELTnSES 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 313 EKAPLETELCRAEKRVLEEERKYEQTVQELSSACSpDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETL 392
Cdd:TIGR04523 357 ENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLES-QINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETI 435
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 393 SSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNET----LRQTIEEKDRSLGSMKEENNHLQEELERL 468
Cdd:TIGR04523 436 IKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQnleqKQKELKSKEKELKKLNEEKKELEEKVKDL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 469 REQQSRVvpapeprtLDSTTELESELSQLHRIKGHLEEEIKHhqkmiEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSI 548
Cdd:TIGR04523 516 TKKISSL--------KEKIEKLESEKKEKESKISDLEDELNK-----DDFELKKENLEKEIDEKNKEIEELKQTQKSLKK 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 549 SHTrlflEKDEEIKNLQKTIEQIKAQLhEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEI 628
Cdd:TIGR04523 583 KQE----EKQELIDQKEKEKKDLIKEI-EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEI 657
|
.
gi 1907085704 629 K 629
Cdd:TIGR04523 658 R 658
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-667 |
1.52e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 60 RDLDLFSQVHDLKHnLEAKEQELNQSIHENEilmAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEK 139
Cdd:COG1196 223 KELEAELLLLKLRE-LEAELEELEAELEELE---AELEELEAELAELEAELEELRLELEELELE----LEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 140 QRTHQLEddkmniiKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 219
Cdd:COG1196 295 AELARLE-------QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 220 STVRSELTQSQTQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGN 299
Cdd:COG1196 368 LEAEAELAEAEEE----------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 300 KQISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSAcspDTSALQLEQERLIQLNQEKDFEIAELKKSIE 379
Cdd:COG1196 438 EEEEEALEEAAEEEAE-LEEEEEALLELLAELLEEAALLEAALAEL---LEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 380 QMDTDHKRTKETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQT-----------IEEKD 448
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALA--AALQNIVVEDDEVAAAAIEYLKAAKAGRATflpldkiraraALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 449 RSLGSMKEENNHLQEELERLREQQSR-----VVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKL 523
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVlgdtlLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 524 QLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHG 603
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907085704 604 SEKHDLSKAETERLVKGIKERELEIKLL--------------NEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEIQAL 667
Cdd:COG1196 752 ALEELPEPPDLEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEE-ARETLEEAIEEIDRETRER 828
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
413-1348 |
5.67e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 5.67e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 413 IVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapeprTLDSTTELES 492
Cdd:TIGR02168 167 ISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL-------LVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 493 ELSQLHRIKGHLEEEIKHHQKMIEdqnqsklqllqslqEQKKELDEFKYQHEQMSishtRLFLEKDEEIKNLQKTIEQIK 572
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQ--------------ELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLE 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 573 AQLheERQDSQTENSDifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGK 652
Cdd:TIGR02168 302 QQK--QILRERLANLE--RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 653 LTQIIQQKDLEIQALHARissASYSQDVVYLQQQLHAYAMEREKVMVILNEktRENSQLKTEYHKVIDIISAKEAALIKL 732
Cdd:TIGR02168 378 EEQLETLRSKVAQLELQI---ASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 733 QDENKKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQ 812
Cdd:TIGR02168 453 QEELERLEEALEEL-----REELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 813 QVKKMEEWKQQVMTTVQ-NMQH---ESAQLQEELHQLQAQVS--------VDSDNNSKLQVDYTGLIQSYEQNETKLKNF 880
Cdd:TIGR02168 528 LISVDEGYEAAIEAALGgRLQAvvvENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 881 GQELAQVQHSIGqlcntkdLLLGKLDI---------MSPQLSSGSSLTSQAAEPLRAS-----QSSEPHESSQLLQQEVD 946
Cdd:TIGR02168 608 VKFDPKLRKALS-------YLLGGVLVvddldnaleLAKKLRPGYRIVTLDGDLVRPGgvitgGSAKTNSSILERRREIE 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 947 DLRKSLQEKDATIRTLQEnnhrlsdsvaasseverkeheqadsEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENL 1026
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEK-------------------------ALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1027 ANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQEtnmkfsmmlrekefechsmrekalaf 1106
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------------------------- 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1107 eqllkekeqgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLE 1186
Cdd:TIGR02168 790 -------------QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES 856
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1187 SEDSHTREALAAEDREAKLrkkvsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYA 1266
Cdd:TIGR02168 857 LAAEIEELEELIEELESEL--------EALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLE 928
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1267 LSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEAN----AALDSASRLTEQLDLKEEQ 1342
Cdd:TIGR02168 929 LRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQ 1008
|
....*.
gi 1907085704 1343 IEELKK 1348
Cdd:TIGR02168 1009 KEDLTE 1014
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
24-575 |
4.68e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 4.68e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 24 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdldlfsqvhdLKHNLEAKEQELNQSIHENEILMAELEELDKQN 103
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEE----------LRLELEELELELEEAQAEEYELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 104 QEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDK 183
Cdd:COG1196 305 ARLEERRRELEERLEELEEE----LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 184 VEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQ----NLKQNLSE 259
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAeeeaELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 260 VEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTV 339
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 340 qelssacspDTSALQLEQERLIQLNQEKDFEIAELKK------SIEQMDTDHKRTKETLSSSLEEQKQLTQLI-NEKEIC 412
Cdd:COG1196 541 ---------EAALAAALQNIVVEDDEVAAAAIEYLKAakagraTFLPLDKIRARAALAAALARGAIGAAVDLVaSDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 413 IVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELES 492
Cdd:COG1196 612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 493 ELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRL--FLEKDEEIKNLQKTIEQ 570
Cdd:COG1196 692 ELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAleELPEPPDLEELERELER 771
|
....*
gi 1907085704 571 IKAQL 575
Cdd:COG1196 772 LEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
242-911 |
6.63e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 67.45 E-value: 6.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 242 LLKERETQVQNLKQNLSEVEQLNE----HLEQVAFDLRTENEELL--------------EAYEEVRNQLEESVAGNKQIS 303
Cdd:pfam15921 79 VLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQmerdamadirrresQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 304 LEKTAMLEWEKAPLET--ELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQER-----LIQLNQEKDFEIAELKK 376
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQlrKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRslgsaISKILRELDTEISYLKG 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 377 SI----EQMDTDHKRTKETLSSSLEE-QKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-KNETLRQTIEEKDRS 450
Cdd:pfam15921 239 RIfpveDQLEALKSESQNKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEiIQEQARNQNSMYMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 451 LGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTEL---ESELSQLHRIKGHLEEEIkhhQKMIEDQNQSKLQLLQ 527
Cdd:pfam15921 319 LSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELteaRTERDQFSQESGNLDDQL---QKLLADLHKREKELSL 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 528 SLQEQKKELDefKYQHEQMSISHTRLFL-EKDEEIKNLQKTIEQIKA--QLHEERQDSQTENSDIFQEtKVQSLSIEHGS 604
Cdd:pfam15921 396 EKEQNKRLWD--RDTGNSITIDHLRRELdDRNMEVQRLEALLKAMKSecQGQMERQMAAIQGKNESLE-KVSSLTAQLES 472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 605 EKHDLSKAETERLVKGIKERELEiKLLNEKNTSLTKQiDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQ 684
Cdd:pfam15921 473 TKEMLRKVVEELTAKKMTLESSE-RTVSDLTASLQEK-ERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEC 550
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 685 QQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIK--------------LQDENKKMSTRFESSGQDM 750
Cdd:pfam15921 551 EALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKeindrrlelqefkiLKDKKDAKIRELEARVSDL 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 751 FKETIQNLS------RIIREKDIEIDALSQKCQTLLTVLQTSGTGSEAGGVN-SNQFEELLQERDKLKQQVKKMEEWKQQ 823
Cdd:pfam15921 631 ELEKVKLVNagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNfRNKSEEMETTTNKLKMQLKSAQSELEQ 710
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 824 VMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTgLIQSYEQNETKLKNF-GQELAQVQHSIGQLCNTKDLLL 902
Cdd:pfam15921 711 TRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQ-FLEEAMTNANKEKHFlKEEKNKLSQELSTVATEKNKMA 789
|
....*....
gi 1907085704 903 GKLDIMSPQ 911
Cdd:pfam15921 790 GELEVLRSQ 798
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2-714 |
9.22e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 9.22e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDISLAEDNQKLQMCVQTLEKEKSLLS-----QEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLE 76
Cdd:TIGR02168 201 QLKSLERQAEKAERYKELKAELRELELALLVLRleelrEELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 77 AKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKEL 156
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 157 TVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSR 236
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 237 NV--KDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEEL---LEAYEEVRNQLEESVAGNKQISLEKTAML- 310
Cdd:TIGR02168 441 ELeeLEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarLDSLERLQENLEGFSEGVKALLKNQSGLSg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 311 -------------EWEKApLETEL-CRAEKRVLEEERKYEQTVQELSSACS--------PDTSALQLEQERLIQLNQEKD 368
Cdd:TIGR02168 521 ilgvlselisvdeGYEAA-IEAALgGRLQAVVVENLNAAKKAIAFLKQNELgrvtflplDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 369 F---------EIAELKKSIEQMdTDHKRTKETLSSSLEEQKQL-----------------------------TQLINEKE 410
Cdd:TIGR02168 600 FlgvakdlvkFDPKLRKALSYL-LGGVLVVDDLDNALELAKKLrpgyrivtldgdlvrpggvitggsaktnsSILERRRE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 411 I-----CIVKLKEKSSELQKELDKCAQTLR----KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSrvvpapep 481
Cdd:TIGR02168 679 IeeleeKIEELEEKIAELEKALAELRKELEeleeELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA-------- 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 482 RTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSIShtrlFLEKDEEI 561
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE----AANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 562 KNLQKTIEQIKAQLHEERQDSQTENSDIfqetKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQ 641
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDI----ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 642 IDQLSKdEVGKLTQIIQQKDLEIQALHARISSAsySQDVVYLQQQLHA-YAMEREKVMVILNEKTRENSQLKTE 714
Cdd:TIGR02168 903 LRELES-KRSELRRELEELREKLAQLELRLEGL--EVRIDNLQERLSEeYSLTLEEAEALENKIEDDEEEARRR 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
24-294 |
2.61e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 2.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 24 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQN 103
Cdd:TIGR02168 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 104 QEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTV---QKEKLTHS----EQALSDLQLT 176
Cdd:TIGR02168 788 EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDleeQIEELSEDieslAAEIEELEEL 867
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 177 KQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKddlLKERETQVQNLKQN 256
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR---LEGLEVRIDNLQER 944
|
250 260 270
....*....|....*....|....*....|....*....
gi 1907085704 257 LSEVEQLN-EHLEQVAFDLRTENEELLEAYEEVRNQLEE 294
Cdd:TIGR02168 945 LSEEYSLTlEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2-647 |
8.00e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 8.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDISLAEDNQKLqmcvqtlekekslLSQEKEELQISLSKLSSEYEVIKSTATrdlDLFSQVHDLKHNLEAKEQE 81
Cdd:TIGR02169 295 KIGELEAEIASLERSIAE-------------KERELEDAEERLAKLEAEIDKLLAEIE---ELEREIEEERKRRDKLTEE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 82 LNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMniikELTVQKE 161
Cdd:TIGR02169 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEA 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 162 KLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDD 241
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 242 LLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTEN---EELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLE 318
Cdd:TIGR02169 515 VLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNvvvEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLSILS 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 319 TELCRAEK-RVLEEERKYEQTV----QELSSACSPDTSALQLEQERLIQLNQE-----------------KDFEIAELKK 376
Cdd:TIGR02169 595 EDGVIGFAvDLVEFDPKYEPAFkyvfGDTLVVEDIEAARRLMGKYRMVTLEGElfeksgamtggsraprgGILFSRSEPA 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 377 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKN----ETLRQTIEEKDRSLG 452
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLkerlEELEEDLSSLEQEIE 754
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 453 SMKEENNHLQEELERLREQQSrvvpapeprtldsttELESELSQLHRIKGHleEEIKHHQKMIEDQNQSKLQLLQSLQEQ 532
Cdd:TIGR02169 755 NVKSELKELEARIEELEEDLH---------------KLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARLREI 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 533 KKELDEFKYQHEQMsishtrlflekDEEIKNLQKTIEQIKAQLHEERQdsQTENSDIFQETKVQSLSiEHGSEKHDLSKa 612
Cdd:TIGR02169 818 EQKLNRLTLEKEYL-----------EKEIQELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELE-ELEAALRDLES- 882
|
650 660 670
....*....|....*....|....*....|....*
gi 1907085704 613 ETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSK 647
Cdd:TIGR02169 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRK 917
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1-673 |
1.41e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1 MRLRSLNQDIS-LAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKstaTRDLDLFSQVHDLKHNLEAKE 79
Cdd:TIGR02168 232 LRLEELREELEeLQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ---KELYALANEISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 80 QELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNII------ 153
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLEtlrskv 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 154 ----KELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNF-----DIQKENHELREHIRQNEEELSTVRS 224
Cdd:TIGR02168 389 aqleLQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqaeleELEEELEELQEELERLEEALEELRE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 225 ELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLS-----------EVEQLNEHLEQVAFDLRTENE----------ELLE 283
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvkallkNQSGLSGILGVLSELISVDEGyeaaieaalgGRLQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 284 AYE-EVRNQLEESVAGNKQISLEKTAMLE-------------WEKAPLETELCRAEKRVLEEERKYEQTVQELSSAC--- 346
Cdd:TIGR02168 549 AVVvENLNAAKKAIAFLKQNELGRVTFLPldsikgteiqgndREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvv 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 347 ------------------------------------SPDTSALQLEQERLIQLNQEKdfeIAELKKSIEQMDTDHKRTKE 390
Cdd:TIGR02168 629 ddldnalelakklrpgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELEEK---IEELEEKIAELEKALAELRK 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 391 TLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 470
Cdd:TIGR02168 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 471 QQSRVVpapeprtldstTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSish 550
Cdd:TIGR02168 786 ELEAQI-----------EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELS--- 851
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 551 trlflekdEEIKNLQKTIEQIKAQLHEerqdsqtensdifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEikl 630
Cdd:TIGR02168 852 --------EDIESLAAEIEELEELIEE-------------LESELEALLNERASLEEALALLRSELEELSEELRELE--- 907
|
730 740 750 760
....*....|....*....|....*....|....*....|...
gi 1907085704 631 lnEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISS 673
Cdd:TIGR02168 908 --SKRSELRRELEEL-REKLAQLELRLEGLEVRIDNLQERLSE 947
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
23-664 |
1.62e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 23 VQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRdldlfSQVHDLKHNLEAKEQELNQSIHENEILMAELEELDKQ 102
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE-----AELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 103 NQEATKHVILIKDQLSKQQSEGDSvIKKLKEELAGEKQRthqleddkmniIKELTVQKEKLTHSEQALSDLQLTKQKLED 182
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDS-LERLQENLEGFSEG-----------VKALLKNQSGLSGILGVLSELISVDEGYEA 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 183 KVE--------DLVDQLSKSEKNNFDIQKENHELREHIRqneeELSTVR------SELTQSQTQGSSRNVKDDLLKERET 248
Cdd:TIGR02168 538 AIEaalggrlqAVVVENLNAAKKAIAFLKQNELGRVTFL----PLDSIKgteiqgNDREILKNIEGFLGVAKDLVKFDPK 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 249 ---QVQNLKQNLSEVEQLNEHLEQV-----AFDLRTENEELLEA----YEEVRNQleESVAGNKQISLE----KTAMLEW 312
Cdd:TIGR02168 614 lrkALSYLLGGVLVVDDLDNALELAkklrpGYRIVTLDGDLVRPggviTGGSAKT--NSSILERRREIEeleeKIEELEE 691
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 313 EKAPLETELCRAEKRV------LEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHK 386
Cdd:TIGR02168 692 KIAELEKALAELRKELeeleeeLEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 387 RTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDkcaQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELE 466
Cdd:TIGR02168 772 EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT---LLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 467 RLREQQSRVVPAPEpRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQM 546
Cdd:TIGR02168 849 ELSEDIESLAAEIE-ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 547 sishtrlflekDEEIKNLQKTIEQIKAQLHEERQDSqtensdiFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL 626
Cdd:TIGR02168 928 -----------ELRLEGLEVRIDNLQERLSEEYSLT-------LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNL 989
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1907085704 627 ----EIKLLNEKNTSLTKQIDQLSKdEVGKLTQIIQQKDLEI 664
Cdd:TIGR02168 990 aaieEYEELKERYDFLTAQKEDLTE-AKETLEEAIEEIDREA 1030
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
74-575 |
1.78e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 1.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 74 NLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKL------KEELAGEKQRTHQLED 147
Cdd:PRK03918 166 NLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklekeVKELEELKEEIEELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 148 DKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLvDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELT 227
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 228 QSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAF------------------DLRTENEELLEAYEEVR 289
Cdd:PRK03918 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAkkeelerlkkrltgltpeKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 290 NQLEESVAG----NKQISLEKTAMLEWEKAPLETELCRAEkrvLEEE------RKYEQTVQELSSACSPDTSALQLEQER 359
Cdd:PRK03918 405 EEISKITARigelKKEIKELKKAIEELKKAKGKCPVCGRE---LTEEhrkellEEYTAELKRIEKELKEIEEKERKLRKE 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 360 LIQLNQE--KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQTLRKN 437
Cdd:PRK03918 482 LRELEKVlkKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLI---KLKGEIKSLKKELEKLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 438 ETLRQTIEEKDRSLGSMKEE--------NNHLQEELERLREQQSRVVpapepRTLDSTTELESELSQLHRikghLEEEIK 509
Cdd:PRK03918 559 AELEKKLDELEEELAELLKEleelgfesVEELEERLKELEPFYNEYL-----ELKDAEKELEREEKELKK----LEEELD 629
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 510 HHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQH-EQMSISHTRLFLEKDEEIKNLQKTIEQIKAQL 575
Cdd:PRK03918 630 KAFEELAETEKRLEELRKELEELEKKYSEEEYEElREEYLELSRELAGLRAELEELEKRREEIKKTL 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
351-1059 |
2.39e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 351 SALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKC 430
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 431 AQTLRKNEtlrQTIEEKDRSLGSMKEENNHLQEELERLREQQSR---VVPAPEPRTLDSTTELE---SELSQLHRIKGHL 504
Cdd:TIGR02168 322 EAQLEELE---SKLDELAEELAELEEKLEELKEELESLEAELEEleaELEELESRLEELEEQLEtlrSKVAQLELQIASL 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 505 EEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSIShtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQT 584
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE------ELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 585 ENSDIFQ-ETKVQSLSIEHGSEKHDLSKAETE-------------------RLVKGIK-----ERELEI-------KLLN 632
Cdd:TIGR02168 473 AEQALDAaERELAQLQARLDSLERLQENLEGFsegvkallknqsglsgilgVLSELISvdegyEAAIEAalggrlqAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 633 EKNTSLTKQIDQLSKDEVGKLTQII--QQKDLEIQALHAriSSASYSQDVVYLQQQLHAYAMEREKVM-------VILNE 703
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPldSIKGTEIQGNDR--EILKNIEGFLGVAKDLVKFDPKLRKALsyllggvLVVDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 704 KTRENSQLKTEYHkvidiisakEAALIKLQDEnkkmstRFESSGQDMFKETIQNLSRIirEKDIEIDALSQKCQTLltvl 783
Cdd:TIGR02168 631 LDNALELAKKLRP---------GYRIVTLDGD------LVRPGGVITGGSAKTNSSIL--ERRREIEELEEKIEEL---- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 784 qtsgTGSEAGGvnSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDY 863
Cdd:TIGR02168 690 ----EEKIAEL--EKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEI 763
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 864 TGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqssephessQLLQQ 943
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL------------ESLER 831
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 944 EVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLikakSDQLHSSN 1023
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL----SEELRELE 907
|
730 740 750
....*....|....*....|....*....|....*.
gi 1907085704 1024 ENLANKVNENELLRQAVTNLKERILILEMDISKLKG 1059
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1074-1379 |
2.53e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 2.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1074 EYQALQEtnmkfSMMLREKEFECHSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1153
Cdd:COG1196 214 RYRELKE-----ELKELEAELLLLKLRELEAELEELEAELEELEA-ELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1154 -------METSTLQNEVQRLRDKESRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENA 1226
Cdd:COG1196 288 aeeyellAELARLEQDIARLEERRRELEERLEELE----EELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1227 SHQASVQVESLQEQLnmvsKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEwKKKAE 1306
Cdd:COG1196 364 EEALLEAEAELAEAE----EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL-EEEEE 438
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 1307 SLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGKVDKVL 1379
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
16-391 |
9.96e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 9.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 16 NQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILMAE 95
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 96 LEELDKQNQEAtkhvilikdqlskqqsegDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQL 175
Cdd:TIGR02168 756 LTELEAEIEEL------------------EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNE 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 176 TKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQgssRNVKDDLLKERETQVQNLKQ 255
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESE---LEALLNERASLEEALALLRS 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 256 NLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLE----------ESVAGNKQISLEkTAMLEWEKAPLETELCRAE 325
Cdd:TIGR02168 895 ELEELSEELRELESKRSELRRELEELREKLAQLELRLEglevridnlqERLSEEYSLTLE-EAEALENKIEDDEEEARRR 973
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 326 KRVLEEERKYEQTVQELSSAcspdtsALQLEQERLIQLNQEKD---FEIAELKKSIEQMDTD-HKRTKET 391
Cdd:TIGR02168 974 LKRLENKIKELGPVNLAAIE------EYEELKERYDFLTAQKEdltEAKETLEEAIEEIDREaRERFKDT 1037
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
2-475 |
1.06e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.05 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDIS-----LAEDNQKLQMCVQTLEKEKSLLSqEKEELQISLSKLSSEYEVIKSTATRDL----DLFSQVHDLK 72
Cdd:PRK02224 207 RLNGLESELAeldeeIERYEEQREQARETRDEADEVLE-EHEERREELETLEAEIEDLRETIAETErereELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 73 HNLEAKEQELNQSIHE-------NEILMAELEELDKQNQEATKHVilikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQL 145
Cdd:PRK02224 286 ERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRL----EECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 146 EDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSE 225
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 226 LTQSQTQGSS-------RNVKD----DLLKERETQVQNLKQNLS----EVEQLNEHLEQvAFDLRtENEELLEAYEEVRN 290
Cdd:PRK02224 442 VEEAEALLEAgkcpecgQPVEGsphvETIEEDRERVEELEAELEdleeEVEEVEERLER-AEDLV-EAEDRIERLEERRE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 291 QLEESVAGNKQISLEKT---AMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELsSACSPDTSALQLEQERL------I 361
Cdd:PRK02224 520 DLEELIAERRETIEEKReraEELRERAAELEAEAEEKREAAAEAEEEAEEAREEV-AELNSKLAELKERIESLerirtlL 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 362 QLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivklkeksSELQKELDKCAQTLRK-NETL 440
Cdd:PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARI---------EEAREDKERAEEYLEQvEEKL 669
|
490 500 510
....*....|....*....|....*....|....*
gi 1907085704 441 RQTIEEKDRSLGSMKEENNHLqEELERLREQQSRV 475
Cdd:PRK02224 670 DELREERDDLQAEIGAVENEL-EELEELRERREAL 703
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
27-517 |
1.50e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 27 EKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN---LEAKEQELNQSIHENEILMAELEE----L 99
Cdd:PRK03918 206 LREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSkrkLEEKIRELEERIEELKKEIEELEEkvkeL 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 100 DKQNQEATKHVILIK--DQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKmNIIKELTVQKEKLTHSEQALSDLQLTK 177
Cdd:PRK03918 286 KELKEKAEEYIKLSEfyEEYLDELREIEKRLSRLEEEINGIEERIKELEEKE-ERLEELKKKLKELEKRLEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 178 QKLEDKVEDLvDQLSKSEKNNF--DIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQ 255
Cdd:PRK03918 365 EEAKAKKEEL-ERLKKRLTGLTpeKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGR 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 256 NLSEvEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKA----PLETELCRAEKRVLEE 331
Cdd:PRK03918 444 ELTE-EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAeqlkELEEKLKKYNLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 332 ERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEI 411
Cdd:PRK03918 523 KAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYN 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 412 CIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL-----QEELERLREqqsrvvpapepRTLDS 486
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELekkysEEEYEELRE-----------EYLEL 671
|
490 500 510
....*....|....*....|....*....|.
gi 1907085704 487 TTELESELSQLHRIKGHLEEEIKHHQKMIED 517
Cdd:PRK03918 672 SRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1180 |
1.71e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 358 ERLIQL-NQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrk 436
Cdd:TIGR02168 213 ERYKELkAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 437 nETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapePRTLDsttELESELSQLHRIKGHLEEEIKHHQKMIE 516
Cdd:TIGR02168 291 -YALANEISRLEQQKQILRERLANLERQLEELEAQLEEL-----ESKLD---ELAEELAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 517 DQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtRLFLEKDEEIKNLQKTIEQIKAQLHEerqdsqtensdifQETKVQ 596
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQLETLR-----------SKVAQLELQIASLNNEIERLEARLER-------------LEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 597 SLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSasy 676
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL-REELEEAEQALDAAERELAQLQARLDS--- 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 677 sqdvvyLQQQLHAYAMEREKVMVILNEKtrenSQLKTEYHKVIDIIS-------AKEAALiklqdenkkmstrfessGQD 749
Cdd:TIGR02168 494 ------LERLQENLEGFSEGVKALLKNQ----SGLSGILGVLSELISvdegyeaAIEAAL-----------------GGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 750 MFKETIQNLSRIIREkdieIDALSQKCQTLLTVL---QTSGTGSEAGGVNSNQFEE----LLQERDKLKQQVKK-MEEWK 821
Cdd:TIGR02168 547 LQAVVVENLNAAKKA----IAFLKQNELGRVTFLpldSIKGTEIQGNDREILKNIEgflgVAKDLVKFDPKLRKaLSYLL 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 822 QQVMTtVQNMQhESAQLQEELHQLQAQVSVDSDnnsklqVDYTGLIQSYEQNETKLKNFGQelaqvQHSIGQLCNTKDLL 901
Cdd:TIGR02168 623 GGVLV-VDDLD-NALELAKKLRPGYRIVTLDGD------LVRPGGVITGGSAKTNSSILER-----RREIEELEEKIEEL 689
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 902 LGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVER 981
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKEL-----EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIE 764
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 982 KEHEQ----------ADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVN--------------ENELLR 1037
Cdd:TIGR02168 765 ELEERleeaeeelaeAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRErleslerriaaterRLEDLE 844
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1038 QAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgk 1117
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE-- 922
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 1118 agELNQLLNAVKSMQEKTVTFQQE-RDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRL 1180
Cdd:TIGR02168 923 --KLAQLELRLEGLEVRIDNLQERlSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
801-1360 |
2.39e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.18 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 801 EELLQERDKLKQQVKKMEEWKQqvmttvqnmqhesaqLQEELHQLQAQVSVDSDNNskLQVDYTGLIQSYEQNETKLKNF 880
Cdd:COG1196 196 GELERQLEPLERQAEKAERYRE---------------LKEELKELEAELLLLKLRE--LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 881 GQELAQVQHSIGQLCNTKDLLLGKLDIMspqlssgssltsQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIR 960
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEA------------QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 961 TLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEkdllIKAKSDQLHSSNENLANKVNENELLRQAV 1040
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LAEAEEELEELAEELLEALRAAAELAAQL 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1041 TNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREK--ALAFEQLLKEKEQGKA 1118
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlaELLEEAALLEAALAEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1119 GELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ----------------------METSTLQNEVQRLRDKESRLNQE 1176
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAglrglagavavligveaayeaaLEAALAAALQNIVVEDDEVAAAA 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1177 LQRLRDHLLESEdshTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLS 1256
Cdd:COG1196 563 IEYLKAAKAGRA---TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1257 VSQEQ----VKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRL 1332
Cdd:COG1196 640 VTLAGrlreVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEE 719
|
570 580
....*....|....*....|....*...
gi 1907085704 1333 TEQLDLKEEQIEELKKQNELHQEMLDDA 1360
Cdd:COG1196 720 ELEEEALEEQLEAEREELLEELLEEEEL 747
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
13-640 |
3.47e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 58.61 E-value: 3.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 13 AEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHE--NE 90
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAE-DARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEakKD 1238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 91 ILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQAl 170
Cdd:PTZ00121 1239 AEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKA- 1317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 171 SDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQV 250
Cdd:PTZ00121 1318 DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAK 1397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 251 QNLKQNLSEVEQLN--EHLEQVAFDLRTENEELLEAyEEVRNQLEESVAGN--KQISLEKTAMLEWEKAPLETELCRAEK 326
Cdd:PTZ00121 1398 KKAEEDKKKADELKkaAAAKKKADEAKKKAEEKKKA-DEAKKKAEEAKKADeaKKKAEEAKKAEEAKKKAEEAKKADEAK 1476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 327 RVLEEERKYEQTVQELSSACSPDTSALQLEQERliqlNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLI 406
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK----KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 407 NEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHL------QEELERLREQQSRVVPAPE 480
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeakKAEEAKIKAEELKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 481 PRTLDSTTELESELSQLHRIKGHLEE-EIKHHQ---KMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE 556
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEEnKIKAAEeakKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 557 ----KDEEIKNLQKT----IEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEI 628
Cdd:PTZ00121 1713 eekkKAEELKKAEEEnkikAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
650
....*....|..
gi 1907085704 629 KLLNEKNTSLTK 640
Cdd:PTZ00121 1793 RMEVDKKIKDIF 1804
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2-499 |
3.65e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 3.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDISLA-EDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVikstatrdldlfsqvhdLKHNLEAKEQ 80
Cdd:COG1196 275 ELEELELELEEAqAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-----------------LEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 81 ELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEgdsvIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQK 160
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----LEELAEELLEALRAAAELAAQLEELEEAEEALL 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 161 EKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKD 240
Cdd:COG1196 414 ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 241 DLLKERETQVQ---------NLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGnKQISLEKTAMLE 311
Cdd:COG1196 494 LLLLEAEADYEgflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAA-AAIEYLKAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 312 ---------------WEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcspdTSALQLEQERLIQLNQEKDFEIAELKK 376
Cdd:COG1196 573 ratflpldkiraraaLAAALARGAIGAAVDLVASDLREADARYYVLGDT----LLGRTLVAARLEAALRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 377 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKE 456
Cdd:COG1196 649 VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1907085704 457 ENNHLQEELERLREQQ---SRVVPAPEPRTLDSTTELESELSQLHR 499
Cdd:COG1196 729 QLEAEREELLEELLEEeelLEEEALEELPEPPDLEELERELERLER 774
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
629-1352 |
1.20e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 1.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 629 KLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMV--ILNEKTR 706
Cdd:pfam15921 92 RRLNESNELHEKQKFYL-RQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKedMLEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 707 ENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTS 786
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPVEDQLEAL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 787 GTGSEaggvnsNQFEELLQE-RDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQV---------------S 850
Cdd:pfam15921 251 KSESQ------NKIELLLQQhQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQArnqnsmymrqlsdleS 324
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 851 VDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQ 930
Cdd:pfam15921 325 TVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLW 404
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 931 SSEPHESSQL--LQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKE- 1007
Cdd:pfam15921 405 DRDTGNSITIdhLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEEl 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1008 --KDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENE------------KIVDASKGKET 1073
Cdd:pfam15921 485 taKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlrnvqtecealKLQMAEKDKVI 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1074 EYQALQETNM---------KFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQER 1142
Cdd:pfam15921 565 EILRQQIENMtqlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFkiLKDKKDAKIRELEARVSDLELEKVKLVNAGSER 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1143 dqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLlesedSHTREALAAEDREAKLRKKVSVLE-EKLVSSSN 1221
Cdd:pfam15921 645 ---LRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNF-----RNKSEEMETTTNKLKMQLKSAQSElEQTRNTLK 716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1222 AMENASHQASVQVESLQEQLNMVSKQRDetALQlsvSQEQVKQYALSLANLQmvlEHFQQEEKAMYSAELEKQNHLLAEW 1301
Cdd:pfam15921 717 SMEGSDGHAMKVAMGMQKQITAKRGQID--ALQ---SKIQFLEEAMTNANKE---KHFLKEEKNKLSQELSTVATEKNKM 788
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 1302 KKKAESLEGKVLSLQERLDEANAALDSAS-RLTEQLDLKEEQIEE---LKKQNEL 1352
Cdd:pfam15921 789 AGELEVLRSQERRLKEKVANMEVALDKASlQFAECQDIIQRQEQEsvrLKLQHTL 843
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
224-581 |
2.64e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.83 E-value: 2.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 224 SELTQSQTQGSSRNVKD--DLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEEL----------LEAYEEVRNQ 291
Cdd:TIGR02168 665 SAKTNSSILERRREIEEleEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELsrqisalrkdLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 292 LEESVAGNKQISLEKTAMLEWEKAPLETElcRAEKRVLEEERKY-EQTVQELSSACSPDTSALQLEQERLIQLNQEKD-- 368
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEA--EEELAEAEAEIEElEAQIEQLKEELKALREALDELRAELTLLNEEAAnl 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 369 --------FEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELdkcAQTLRKNETL 440
Cdd:TIGR02168 823 rerlesleRRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEAL---ALLRSELEEL 899
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 441 RQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVvpapePRTLDSTTELESELSQLhrikghLEEEIKHHQKMIEDQNQ 520
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGL-----EVRIDNLQERLSEEYSL------TLEEAEALENKIEDDEE 968
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 521 SKLQLLQSLQEQKKEL--------DEFKYQHEQMSishtrlFLEK-----DEEIKNLQKTIEQIKAQLHEERQD 581
Cdd:TIGR02168 969 EARRRLKRLENKIKELgpvnlaaiEEYEELKERYD------FLTAqkedlTEAKETLEEAIEEIDREARERFKD 1036
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
799-1346 |
3.53e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 3.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 799 QFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLK 878
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 879 NFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDAT 958
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 959 IRTLQENNHRLSDSVAASSEVERKEhEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ 1038
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLE-RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1039 AVTNLKERILILEmDISKLKGENEKIVDASKGKETEYQALQETNMKFSmmLREKEFECHSMREKALAFEQLLKEKEQGKA 1118
Cdd:COG1196 472 AALLEAALAELLE-ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1119 GELN--------QLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDS 1190
Cdd:COG1196 549 QNIVveddevaaAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1191 HTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQlnmvsKQRDETALQLSVSQEQVKQYALSLA 1270
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAE-----AELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907085704 1271 NLQMVLEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEEL 1346
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
658-1367 |
4.98e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 4.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 658 QQKDLEIQALHA----RISSASYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEyhkvidiISAKEAALIKLQ 733
Cdd:TIGR02168 201 QLKSLERQAEKAerykELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAE-------LQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 734 DENKKMSTRFESsgqdmFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQtsgtgseaggVNSNQFEELLQERDKLKQQ 813
Cdd:TIGR02168 274 LEVSELEEEIEE-----LQKELYALANEISRLEQQKQILRERLANLERQLE----------ELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 814 VKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ 893
Cdd:TIGR02168 339 LAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 894 LCNTKDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENN 966
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELeeeleelQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQ 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 967 HRLSDSVAASSEVErKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnENELLRQavtNLKER 1046
Cdd:TIGR02168 499 ENLEGFSEGVKALL-KNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKK--AIAFLKQ---NELGR 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1047 ILILEMDI---SKLKGENEKIVDASKGKETEYQALQETNMKFSM--------------------MLREKEFE-------- 1095
Cdd:TIGR02168 573 VTFLPLDSikgTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKalsyllggvlvvddldnaleLAKKLRPGyrivtldg 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1096 -----CHSMREKALAFEQLLKEKEQgkagELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKE 1170
Cdd:TIGR02168 653 dlvrpGGVITGGSAKTNSSILERRR----EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1171 SRLNQELQRLRdhllESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnamENASHQASVQVESLQEQLNMVSKQRDE 1250
Cdd:TIGR02168 729 SALRKDLARLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEA----EEELAEAEAEIEELEAQIEQLKEELKA 800
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1251 TALQLSVSQEQVKQYALSLANLQMVLEHFQQeEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSas 1330
Cdd:TIGR02168 801 LREALDELRAELTLLNEEAANLRERLESLER-RIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA-- 877
|
730 740 750
....*....|....*....|....*....|....*..
gi 1907085704 1331 rLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1367
Cdd:TIGR02168 878 -LLNERASLEEALALLRSELEELSEELRELESKRSEL 913
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
210-536 |
5.16e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.56 E-value: 5.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 210 EHIRQNEEELSTVRSELT--------QSQTQGSSRNVKDDlLKERETQV-----QNLKQNLSEVEQLNEHLEQVAFDLRT 276
Cdd:COG1196 182 EATEENLERLEDILGELErqleplerQAEKAERYRELKEE-LKELEAELlllklRELEAELEELEAELEELEAELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 277 ENEELLEAYEEVRNQLEEsvagnkqislektamlewekapLETELCRAEKRVLEEERKYEQTVQELSSACSpDTSALQLE 356
Cdd:COG1196 261 ELAELEAELEELRLELEE----------------------LELELEEAQAEEYELLAELARLEQDIARLEE-RRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 357 QERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEIcivKLKEKSSELQKELDKCAQTLRK 436
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA---ELAEAEEELEELAEELLEALRA 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 437 NETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIE 516
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340
....*....|....*....|
gi 1907085704 517 DQNQSKLQLLQSLQEQKKEL 536
Cdd:COG1196 475 LEAALAELLEELAEAAARLL 494
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
422-1178 |
7.15e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 7.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 422 ELQKELDKCAQTLRKNE-TLRQTIEEKDRSLGSMKEENNHLQEEleRLREQQSRVvpapeprtlDSTTELESELSQLHRI 500
Cdd:pfam15921 89 DLQRRLNESNELHEKQKfYLRQSVIDLQTKLQEMQMERDAMADI--RRRESQSQE---------DLRNQLQNTVHELEAA 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 501 KGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFK-------YQHEQMSISHTR--------LFLEKDEEIKNLQ 565
Cdd:pfam15921 158 KCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEeasgkkiYEHDSMSTMHFRslgsaiskILRELDTEISYLK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 566 KTIEQIKAQLHEERQDSQTENSDIFQETKvqslsiehgsekhdlskaetERLVKGIKERELEIKLLNEKNTSLTKQIDQL 645
Cdd:pfam15921 238 GRIFPVEDQLEALKSESQNKIELLLQQHQ--------------------DRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 646 SKDevgklTQIIQQKDLEIQALHARISS---ASYSQDVVYLQQQLHAYA---MEREKVMVILNEK-----------TREN 708
Cdd:pfam15921 298 QSQ-----LEIIQEQARNQNSMYMRQLSdleSTVSQLRSELREAKRMYEdkiEELEKQLVLANSEltearterdqfSQES 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 709 SQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRfeSSGQDMfkeTIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSGT 788
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDR--DTGNSI---TIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 789 GSEAGGVNSNQFEE----LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYT 864
Cdd:pfam15921 448 RQMAAIQGKNESLEkvssLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVD 527
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 865 GLIQSYEQnetkLKNFGQELAQVQHSigqlCNTKDLLLGKLD----IMSPQLSSGSSLTSQAAEPLRASQSSEPHessql 940
Cdd:pfam15921 528 LKLQELQH----LKNEGDHLRNVQTE----CEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQ----- 594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 941 LQQEVDDLRKSLQE-------KDATIRTLQEnnhRLSDsvaasSEVERKEHEQADSE----IKQLKEKQEVLQNLLKEKD 1009
Cdd:pfam15921 595 LEKEINDRRLELQEfkilkdkKDAKIRELEA---RVSD-----LELEKVKLVNAGSErlraVKDIKQERDQLLNEVKTSR 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1010 LLIKAKSDQLHSSNENLANKVNENEL----LRQAVTNLKERILILEMDISKLKGENEKIVDASKG-------KETEYQAL 1078
Cdd:pfam15921 667 NELNSLSEDYEVLKRNFRNKSEEMETttnkLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGmqkqitaKRGQIDAL 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1079 QETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGK---AGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQME 1155
Cdd:pfam15921 747 QSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKnkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDI 826
|
810 820
....*....|....*....|...
gi 1907085704 1156 TSTLQNEVQRLRDKESRLNQELQ 1178
Cdd:pfam15921 827 IQRQEQESVRLKLQHTLDVKELQ 849
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
23-475 |
1.03e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.58 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 23 VQTLEKEKSLLSQEKEELQISLSKLSSEyevikstaTRDLDlfSQVHDLKHNLEAKEQELNQSIHENEILMAE------- 95
Cdd:pfam15921 344 IEELEKQLVLANSELTEARTERDQFSQE--------SGNLD--DQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsit 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 96 ----LEELDKQNQEATKHVILIKDQLSKQQSEGD---SVIKKLKEELAGEKQRTHQLEDDK---MNIIKELTVQKEKLTH 165
Cdd:pfam15921 414 idhlRRELDDRNMEVQRLEALLKAMKSECQGQMErqmAAIQGKNESLEKVSSLTAQLESTKemlRKVVEELTAKKMTLES 493
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 166 SEQALSDLQLTKQKLEDKVEDLVDQLSKSeKNNFDIQKENhelREHIRQNEEELSTVRSELTQSQTQGSSrnvKDDLLKE 245
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKL-RSRVDLKLQE---LQHLKNEGDHLRNVQTECEALKLQMAE---KDKVIEI 566
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 246 RETQVQNLKQNLSE-------VEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwekapLE 318
Cdd:pfam15921 567 LRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN-----AG 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 319 TELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSS---- 394
Cdd:pfam15921 642 SERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSmegs 721
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 395 ---SLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAqtlRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQ 471
Cdd:pfam15921 722 dghAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAN---KEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQ 798
|
....
gi 1907085704 472 QSRV 475
Cdd:pfam15921 799 ERRL 802
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
919-1272 |
1.07e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 53.75 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 919 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATirTLQENNHRLSDSVAASSEVERKEHEQADSEIK------ 992
Cdd:PLN02939 51 GKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKS--TSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGeqlsdf 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 993 QLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKvnenellrqavTNLKERILILEMDISKlkgENEKIVDASKGK- 1071
Cdd:PLN02939 129 QLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEK-----------EALQGKINILEMRLSE---TDARIKLAAQEKi 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1072 ETEYQALQETNMKFSMMLR-EKEFECHSMREKALafeQLLKEKEQGKAGELNQL---LNAVKSMQEKTVTFQQERDQVML 1147
Cdd:PLN02939 195 HVEILEEQLEKLRNELLIRgATEGLCVHSLSKEL---DVLKEENMLLKDDIQFLkaeLIEVAETEERVFKLEKERSLLDA 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1148 ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSsnameNAS 1227
Cdd:PLN02939 272 SLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEA-----NVS 346
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1907085704 1228 HQASVQVESLQEQLNMVSKQRD----ETALQLSVSQEQVKQYALSLANL 1272
Cdd:PLN02939 347 KFSSYKVELLQQKLKLLEERLQasdhEIHSYIQLYQESIKEFQDTLSKL 395
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-954 |
1.12e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 1.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 140 QRTHQLEDDKMNIikELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEEL 219
Cdd:TIGR02168 213 ERYKELKAELREL--ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 220 STVRSELtqsqtqgssrnvkDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEAYEEVRNQLEEsVAGN 299
Cdd:TIGR02168 291 YALANEI-------------SRLEQQKQILRERLANLERQLEELEAQLEE----LESKLDELAEELAELEEKLEE-LKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 300 KQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSpdtsalqleqerliqlnqekdfEIAELKKSIE 379
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN----------------------EIERLEARLE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 380 QMDTDHKRTKETLSSslEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLrknETLRQTIEEKDRSLGSMKEENN 459
Cdd:TIGR02168 411 RLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEAL---EELREELEEAEQALDAAERELA 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 460 HLQEELERLREQQSRVVPAPEprtldSTTELESELSQLHRIKGHLEEEIKHHQK----------------MIEDQNQSKL 523
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSE-----GVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalggrlqavVVENLNAAKK 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 524 QLLQSLQEQKK-----ELDEFKYQHEQmsiSHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ----------DSQTENSD 588
Cdd:TIGR02168 561 AIAFLKQNELGrvtflPLDSIKGTEIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 589 IFQETKVQSL------------SIEHGSEKHDLSKAETERlvkGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQI 656
Cdd:TIGR02168 638 AKKLRPGYRIvtldgdlvrpggVITGGSAKTNSSILERRR---EIEELEEKIEELEEKIAELEKALAEL-RKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 657 IQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREKVMviLNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDEN 736
Cdd:TIGR02168 714 LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE--LTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 737 KKMSTRFESSgqdmfKETIQNLSRIIREKDIEIDALSQKCQTLLtvlqtsgtgseaggvnsNQFEELLQERDKLKQQVKK 816
Cdd:TIGR02168 792 EQLKEELKAL-----REALDELRAELTLLNEEAANLRERLESLE-----------------RRIAATERRLEDLEEQIEE 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 817 MEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQLCN 896
Cdd:TIGR02168 850 LSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLEL 929
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 1907085704 897 TKDLLLGKLDIMSPQLSSGSSLTSQAAEPLrasqSSEPHESSQLLQQEVDDLRKSLQE 954
Cdd:TIGR02168 930 RLEGLEVRIDNLQERLSEEYSLTLEEAEAL----ENKIEDDEEEARRRLKRLENKIKE 983
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
945-1367 |
1.19e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 945 VDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNL--LKEKDLLIKAKSDQLHSS 1022
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELpeLREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1023 NENLANKVNENELLRQAVTNLKERILILEMDISKLKG------ENEKIVDASKGKETEYQALQETNMKFSMMLREKEFEC 1096
Cdd:PRK03918 237 KEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKeieeleEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1097 HSMREKALAFEQLLKEKEQGKAgELNQLLNAVKSMQEKTVTFQqERDQVMLALKQKQMETSTLQNEVQRLR-DKESRLNQ 1175
Cdd:PRK03918 317 SRLEEEINGIEERIKELEEKEE-RLEELKKKLKELEKRLEELE-ERHELYEEAKAKKEELERLKKRLTGLTpEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1176 ELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEE-KLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQ 1254
Cdd:PRK03918 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKaKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1255 LSVSQEQVKQYALSLANLQMV---------LEHFQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAA 1325
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELiklkelaeqLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEEL 554
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1907085704 1326 LDSASRLTEQLDLKEEQIEELKKQ-NELHQEMLDDAQKKLMSL 1367
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKElEELGFESVEELEERLKEL 597
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
18-427 |
1.54e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 18 KLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHEneiLMAELE 97
Cdd:TIGR04523 222 ELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ---LKSEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 98 ELDKQNQEAT--------KHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA 169
Cdd:TIGR04523 299 DLNNQKEQDWnkelkselKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 170 LSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKD--------D 241
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDsvkeliikN 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 242 LLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQIS--LEKTAMLEWEKAPLET 319
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISslKEKIEKLESEKKEKES 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 320 ELCRAEKRVLEEE-----RKYEQTVQELSSACSP---DTSALQLEQERLIQLNQEKDFEIAELKKSIEqmdtdhkrTKET 391
Cdd:TIGR04523 539 KISDLEDELNKDDfelkkENLEKEIDEKNKEIEElkqTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE--------EKEK 610
|
410 420 430
....*....|....*....|....*....|....*..
gi 1907085704 392 LSSSLEEQKQLTQLINEK-EICIVKLKEKSSELQKEL 427
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKlSSIIKNIKSKKNKLKQEV 647
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
25-475 |
1.55e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 25 TLEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrdldlfsqvhDLKHNLEAKEQELNQSIHENEILMAELEELDKQNQ 104
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRLSRLEEEINGIE--------------ERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 105 EATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKL---- 180
Cdd:PRK03918 363 LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcg 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 181 ----EDKVEDLVDQLSKSEKNnfdIQKENHELREHIRQNEEELSTVRSELTQSQTqgssrnvkddLLKERET--QVQNLK 254
Cdd:PRK03918 443 reltEEHRKELLEEYTAELKR---IEKELKEIEEKERKLRKELRELEKVLKKESE----------LIKLKELaeQLKELE 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 255 QNLSEVEQlnEHLEQVAFDLRTENEELLEAYEEVRNQLEEsvagnkqisLEKTAMLEWEKAPLETELCRAEKRVLEEERK 334
Cdd:PRK03918 510 EKLKKYNL--EELEKKAEEYEKLKEKLIKLKGEIKSLKKE---------LEKLEELKKKLAELEKKLDELEEELAELLKE 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 335 Y-----------EQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTDHKRTKEtLSSSLEEqkqLT 403
Cdd:PRK03918 579 LeelgfesveelEERLKELEPFYNEYLELKDAEKELEREEKELKKLE-EELDKAFEELAETEKRLEE-LRKELEE---LE 653
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907085704 404 QLINEKEicIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRV 475
Cdd:PRK03918 654 KKYSEEE--YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
24-592 |
1.61e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.13 E-value: 1.61e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 24 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDL-----KHNLEAKEQELNQSIHENEILMAELEE 98
Cdd:TIGR00606 440 RTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELskaekNSLTETLKKEVKSLQNEKADLDRKLRK 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 99 LDKQNQEATKHVILIK--DQLSKQQSEGDSVIKKLKEE-------LAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQA 169
Cdd:TIGR00606 520 LDQEMEQLNHHTTTRTqmEMLTKDKMDKDEQIRKIKSRhsdeltsLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKE 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 170 LSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDI------QKENHELREHIRQNEEE---LSTVRSELTQSQTQGSSRNVKD 240
Cdd:TIGR00606 600 LASLEQNKNHINNELESKEEQLSSYEDKLFDVcgsqdeESDLERLKEEIEKSSKQramLAGATAVYSQFITQLTDENQSC 679
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 241 DLLKERETQVqnlKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK---QISLEKTAMLEWEKAPL 317
Cdd:TIGR00606 680 CPVCQRVFQT---EAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQsiiDLKEKEIPELRNKLQKV 756
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 318 ETELCRAEKRVLEEERKYEQTVQELSSA--CSPDTSALQLEQERLIQLNQEKDFEIAELK-----KSIEQMDTDHKRTKE 390
Cdd:TIGR00606 757 NRDIQRLKNDIEEQETLLGTIMPEEESAkvCLTDVTIMERFQMELKDVERKIAQQAAKLQgsdldRTVQQVNQEKQEKQH 836
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 391 TLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE-------LDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQE 463
Cdd:TIGR00606 837 ELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEklqigtnLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLET 916
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 464 ELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDE----- 538
Cdd:TIGR00606 917 FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKhqeki 996
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 539 ----------FKYQHEQMSISHTRLFLEK-DEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQE 592
Cdd:TIGR00606 997 nedmrlmrqdIDTQKIQERWLQDNLTLRKrENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE 1061
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
76-397 |
1.86e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.76 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 76 EAKEQELNQSIHENEILMAELEELDKQNQEATKHvilikdqlskqqsegdsvIKKLKEELAGEKQRTHQLEDDkmniIKE 155
Cdd:TIGR02169 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEE------------------LEKLTEEISELEKRLEEIEQL----LEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 156 LTVQKEKLTHSEQA-----LSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQ 230
Cdd:TIGR02169 277 LNKKIKDLGEEEQLrvkekIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 231 TQgssrnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLE----- 305
Cdd:TIGR02169 357 EE----------YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEEladln 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 306 -KTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLIQLNQEKDFEIAELKKS---IEQM 381
Cdd:TIGR02169 427 aAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY-EQELYDLKEEYDRVEKELSKLQRELAEAEAQaraSEER 505
|
330
....*....|....*.
gi 1907085704 382 DTDHKRTKETLSSSLE 397
Cdd:TIGR02169 506 VRGGRAVEEVLKASIQ 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1139-1374 |
1.96e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.07 E-value: 1.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1139 QQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRdhllesedshtREALAAEDREAKLRKKVSVLEEKLVS 1218
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----------RRIAALARRIRALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1219 SSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS--AELEKQNH 1296
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRAdlAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907085704 1297 LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-SRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1374
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLlARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
902-1364 |
3.07e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 3.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 902 LGKLDIMSPQLSSGSSLTSQAAEplraSQSSEPHESSQLLQQEVDDLRKSLQ----EKDATIRTLQENNHRLSdsvaass 977
Cdd:PRK02224 176 LGVERVLSDQRGSLDQLKAQIEE----KEEKDLHERLNGLESELAELDEEIEryeeQREQARETRDEADEVLE------- 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 978 everkEHEQADSEIKQLKEKQEVLQnllkekdllikaksdqlhssnENLANKVNENELLRQAVTNLKERILILEMDISKL 1057
Cdd:PRK02224 245 -----EHEERREELETLEAEIEDLR---------------------ETIAETEREREELAEEVRDLRERLEELEEERDDL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1058 KGE-------NEKIVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQgKAGELNQLLNAVKS 1130
Cdd:PRK02224 299 LAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE-EAAELESELEEARE 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1131 MQEKTVTFQQERDQVMLALKQKQMETST-----------LQNEVQRLRDKESRLNQELQRLRDHLLESED---------- 1189
Cdd:PRK02224 378 AVEDRREEIEELEEEIEELRERFGDAPVdlgnaedfleeLREERDELREREAELEATLRTARERVEEAEAlleagkcpec 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1190 -------SHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASH--QASVQVESLQEQLNMVSKQRDETALQLSVSQE 1260
Cdd:PRK02224 458 gqpvegsPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDlvEAEDRIERLEERREDLEELIAERRETIEEKRE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1261 QVKQyalslanlqmvlehfQQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDL-- 1338
Cdd:PRK02224 538 RAEE---------------LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAia 602
|
490 500
....*....|....*....|....*..
gi 1907085704 1339 -KEEQIEELKKQNELHQEMLDDAQKKL 1364
Cdd:PRK02224 603 dAEDEIERLREKREALAELNDERRERL 629
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
439-1277 |
3.11e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 3.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 439 TLRQTIEEKDRSLGSMKEENNHLQEELERlrEQQSRVVPAPEPRTLDSTteLESELSQLHRIKGHLEEEIKHHQKMIEDQ 518
Cdd:pfam15921 33 SIRGTIIENTSSTGTFTQIPIFPKYEVEL--DSPRKIIAYPGKEHIERV--LEEYSHQVKDLQRRLNESNELHEKQKFYL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 519 NQSKLQLLQSLQEQKKELDEFKYQHEQMSISHtrlflekdEEIKN-LQKTIEQIKAqlheerqdSQTENSDIFQETKVQS 597
Cdd:pfam15921 109 RQSVIDLQTKLQEMQMERDAMADIRRRESQSQ--------EDLRNqLQNTVHELEA--------AKCLKEDMLEDSNTQI 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 598 LSIEHGSEKHDLSKAETERLVkgIKERELEIKLLNEKNTSLTKQIDQLSKdevgKLTQIIQQKDLEIQALHARISSasys 677
Cdd:pfam15921 173 EQLRKMMLSHEGVLQEIRSIL--VDFEEASGKKIYEHDSMSTMHFRSLGS----AISKILRELDTEISYLKGRIFP---- 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 678 qdvvyLQQQLHAYAMEREKVMVILnektrensqLKTEYHKVIDIISAKEAALIKLQDenKKMSTRFESSgqdmfkeTIQN 757
Cdd:pfam15921 243 -----VEDQLEALKSESQNKIELL---------LQQHQDRIEQLISEHEVEITGLTE--KASSARSQAN-------SIQS 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 758 LSRIIREKDIEIDALSQKCQTLL--TVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHES 835
Cdd:pfam15921 300 QLEIIQEQARNQNSMYMRQLSDLesTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 836 AQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSI--------GQLCNTKDLLLGKldi 907
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLkamksecqGQMERQMAAIQGK--- 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 908 mSPQLSSGSSLTSQaaeplrasqssephessqlLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEhEQA 987
Cdd:pfam15921 457 -NESLEKVSSLTAQ-------------------LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAI-EAT 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 988 DSEIKQLKE----KQEVLQNLLKEKDLLIKAKSdQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEK 1063
Cdd:pfam15921 516 NAEITKLRSrvdlKLQELQHLKNEGDHLRNVQT-ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQ 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1064 IVDASKGKETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAG---ELNQLLNAVKSMQEKTVTFQQ 1140
Cdd:pfam15921 595 LEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDikqERDQLLNEVKTSRNELNSLSE 674
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1141 ERDQVMLALKQKQMETSTLQNEVQ-RLRDKESRLNQELQRLRDhlLESEDSHT-REALAAEDREAKLRKKVSVLEEKLVS 1218
Cdd:pfam15921 675 DYEVLKRNFRNKSEEMETTTNKLKmQLKSAQSELEQTRNTLKS--MEGSDGHAmKVAMGMQKQITAKRGQIDALQSKIQF 752
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907085704 1219 SSNAMENAS---HQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLE 1277
Cdd:pfam15921 753 LEEAMTNANkekHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
72-652 |
4.47e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.68 E-value: 4.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 72 KHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIK--DQLSKQQSE----GDSVIKKLKEELAGEKQRTHQL 145
Cdd:PTZ00121 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKkaDEAKKKAEEdkkkADELKKAAAAKKKADEAKKKAE 1428
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 146 EDDKMNIIKELTVQKEKLTH----SEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELR---EHIRQNEEE 218
Cdd:PTZ00121 1429 EKKKADEAKKKAEEAKKADEakkkAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKkkaDEAKKAAEA 1508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 219 lstvrSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNE--HLEQVAFDLRTENEELLEAYEEVRN----QL 292
Cdd:PTZ00121 1509 -----KKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADElkKAEELKKAEEKKKAEEAKKAEEDKNmalrKA 1583
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 293 EESVAGNKQISLEKTAMLEWEKAPLETELCRAEK-RVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEI 371
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEaKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 372 AELKKSIEQmdtDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKeldKCAQTLRKNETLRQTIEEKDRSL 451
Cdd:PTZ00121 1664 AEEAKKAEE---DKKKAEEAKKAEEDEKKAAEALKKEAE-----EAKKAEELKK---KEAEEKKKAEELKKAEEENKIKA 1732
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 452 GSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQE 531
Cdd:PTZ00121 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 532 QKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHdlsk 611
Cdd:PTZ00121 1813 GGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEAD---- 1888
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907085704 612 aETERLVKGIKERELEIKLLNEKNTSLTKqiDQLSKDEVGK 652
Cdd:PTZ00121 1889 -EIEKIDKDDIEREIPNNNMAGKNNDIID--DKLDKDEYIK 1926
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
118-470 |
5.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 5.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 118 SKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSekn 197
Cdd:TIGR02169 659 SRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL--- 735
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 198 nfdiQKENHELREHIRQNEEELSTVRSELTQ------------SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNE 265
Cdd:TIGR02169 736 ----KERLEELEEDLSSLEQEIENVKSELKElearieeleedlHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 266 ----HLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISlEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQtvqe 341
Cdd:TIGR02169 812 arlrEIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE-KEIENLNGKKEELEEELEELEAALRDLESRLGD---- 886
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 342 lssacspdtsaLQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEkEICIVKLKEKSS 421
Cdd:TIGR02169 887 -----------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE-DEEIPEEELSLE 954
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 422 ELQKELDKCAQTLRKNETLR----QTIEEKDRSLGSMKEENNHLQEELERLRE 470
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVNmlaiQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
242-545 |
9.64e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 9.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 242 LLKERETQVQNLKQNLSEVEQLNEHLEQVAFdLRTENEELLEAYEEVRNQLEESVagnKQISLEKTAMLEWEKAPLETEL 321
Cdd:TIGR02169 228 LLKEKEALERQKEAIERQLASLEEELEKLTE-EISELEKRLEEIEQLLEELNKKI---KDLGEEEQLRVKEKIGELEAEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 322 CRAEKRVLEEERKYEQtvqelssacspdtsaLQLEQERLIQLNQEKDFEIAELKKSIEqmdtdhkrtketlssslEEQKQ 401
Cdd:TIGR02169 304 ASLERSIAEKERELED---------------AEERLAKLEAEIDKLLAEIEELEREIE-----------------EERKR 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 402 LTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRvVPAPEP 481
Cdd:TIGR02169 352 RDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD-LNAAIA 430
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 482 RTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQ 545
Cdd:TIGR02169 431 GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
204-519 |
1.02e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 50.12 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 204 ENHELREHIRQNEEELSTVRSELTQSQTQGSSrnVKDDLLKERETQVQNLKqNLSEVEQLNEHLEQVAFDLRTENEELLE 283
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTM--TENEFLNQLLHIVQHQK-AVSERQQQEKFEKMEQERLRQEKEEKAR 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 284 AYEEvRNQLEESVAGnKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEqtvqelssacspdtsalqLEQERliql 363
Cdd:pfam17380 311 EVER-RRKLEEAEKA-RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRE------------------LERIR---- 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 364 NQEKDFEIAELKKsIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQtlrknETLRQT 443
Cdd:pfam17380 367 QEEIAMEISRMRE-LERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ-----REVRRL 440
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 444 IEEKDRSLGSMKEENNHLQEELERLREQQSRvvPAPEPRTLDSTTELESELSQLHRIKghLEEEIK-HHQKMIEDQN 519
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEE--RKRKKLELEKEKRDRKRAEEQRRKI--LEKELEeRKQAMIEEER 513
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
14-577 |
1.51e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 14 EDNQKLQMCVQTLEKEKSLLSQEKEELQislSKLSSEYEvikstatrdldLFSQVHDLKHNLEAKEQELNQSIHENEILM 93
Cdd:pfam01576 19 ERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAETE-----------LCAEAEEMRARLAARKQELEEILHELESRL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 94 AELEELDKQNQEATK----HVILIKDQLSKQQS----------EGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ 159
Cdd:pfam01576 85 EEEEERSQQLQNEKKkmqqHIQDLEEQLDEEEAarqklqlekvTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEF 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 160 KEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVK 239
Cdd:pfam01576 165 TSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 240 DDLLKERETQVQNLKQN-LSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQI--SLEKTAMLEWEKAP 316
Cdd:pfam01576 245 LQAALARLEEETAQKNNaLKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELedTLDTTAAQQELRSK 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 317 LETELCRAEKRVLEEERKYEQTVQELSS--ACSPDTSALQLEQERLIQLNQEK-----DFEIAELKKSIE-----QMDTD 384
Cdd:pfam01576 325 REQEVTELKKALEEETRSHEAQLQEMRQkhTQALEELTEQLEQAKRNKANLEKakqalESENAELQAELRtlqqaKQDSE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 385 HKRTKetlsssLEEQKQLTQL-INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSmkeennHLQE 463
Cdd:pfam01576 405 HKRKK------LEGQLQELQArLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLES------QLQD 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 464 ELERLREqqsrvvpapeprtldsttELESELSQLHRIKgHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQH 543
Cdd:pfam01576 473 TQELLQE------------------ETRQKLNLSTRLR-QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580 590
....*....|....*....|....*....|....
gi 1907085704 544 EQMSISHTRLflekDEEIKNLQKTIEQIKAQLHE 577
Cdd:pfam01576 534 EEDAGTLEAL----EEGKKRLQRELEALTQQLEE 563
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
14-657 |
1.96e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 14 EDNQKLQMCVQTLEKEKSLLSQEKEELQIslsKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILM 93
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEI---KREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 94 AELEELDKQNQEATKH---VILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQAL 170
Cdd:pfam02463 398 ELKSEEEKEAQLLLELarqLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKET 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 171 SDLQLTKQKLEDKVEDLVDQLS------KSEKNNFDIQKENHELR----EHIRQNEEELSTVRSELTQSQTQGSSRNVKD 240
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSqkeskaRSGLKVLLALIKDGVGGriisAHGRLGDLGVAVENYKVAISTAVIVEVSATA 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 241 DLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEwEKAPLETE 320
Cdd:pfam02463 558 DEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI-LKDTELTK 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 321 LCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSI-----EQMDTDHKRTKETLSSS 395
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIlrrqlEIKKKEQREKEELKKLK 716
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 396 LEEQKQLTQLINEKEICI----VKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKE--ENNHLQEELERLR 469
Cdd:pfam02463 717 LEAEELLADRVQEAQDKIneelKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREktEKLKVEEEKEEKL 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 470 EQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSIS 549
Cdd:pfam02463 797 KAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 876
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 550 HTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIK 629
Cdd:pfam02463 877 EELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKE 956
|
650 660
....*....|....*....|....*...
gi 1907085704 630 LLNEKNTSLTKQIDQLSKDEVGKLTQII 657
Cdd:pfam02463 957 EEEERNKRLLLAKEELGKVNLMAIEEFE 984
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
926-1358 |
1.98e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 49.33 E-value: 1.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 926 LRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSE-------IKQLKEKQ 998
Cdd:pfam05483 279 LQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAkaahsfvVTEFEATT 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 999 EVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENEllrqAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQAL 1078
Cdd:pfam05483 359 CSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE----EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEEL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1079 QETNMKFSMMLREKEFECHSMREKALAF----EQLLKEKEQGKAGELNQLLNAVK--------SMQEKTVTfqQERDQVM 1146
Cdd:pfam05483 435 KGKEQELIFLLQAREKEIHDLEIQLTAIktseEHYLKEVEDLKTELEKEKLKNIEltahcdklLLENKELT--QEASDMT 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1147 LALKQKQ--------------METSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVL 1212
Cdd:pfam05483 513 LELKKHQediinckkqeermlKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKIL 592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1213 EEKLVSSSNAMENASHqasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysaelE 1292
Cdd:pfam05483 593 ENKCNNLKKQIENKNK----NIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK------------------Q 650
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 1293 KQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLK-EEQIEELKKQNELHQEMLD 1358
Cdd:pfam05483 651 KFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRcQHKIAEMVALMEKHKHQYD 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
114-741 |
2.54e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 2.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 114 KDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEddkmNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSK 193
Cdd:TIGR04523 25 KNIANKQDTEEKQLEKKLKTIKNELKNKEKELK----NLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINK 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 194 SEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKddlLKERETQVQNLKQNLSEVEQLNEHLEQVAFD 273
Cdd:TIGR04523 101 LNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTE---IKKKEKELEKLNNKYNDLKKQKEELENELNL 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 274 LRTENEELLEAYEEVRNQLEesvagNKQISLEKTAMLEWEKAPLETELCRAEKrvleEERKYEQTVQELSSACSPDTSAL 353
Cdd:TIGR04523 178 LEKEKLNIQKNIDKIKNKLL-----KLELLLSNLKKKIQKNKSLESQISELKK----QNNQLKDNIEKKQQEINEKTTEI 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 354 QLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVK-LKEKSSELQKELDKCAQ 432
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKeLKSELKNQEKKLEEIQN 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 433 TLRKNEtlrQTIEEKDRSLGSMKEENNHLQEELERLREQqsrvvpapeprtldsTTELESELSQLHRIKGHLEEEIKHHQ 512
Cdd:TIGR04523 329 QISQNN---KIISQLNEQISQLKKELTNSESENSEKQRE---------------LEEKQNEIEKLKKENQSYKQEIKNLE 390
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 513 KMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEK---DEEIKNLQKTIEQIKAQLHEerqdsqTENSDI 589
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIiknNSEIKDLTNQDSVKELIIKN------LDNTRE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 590 FQETKVQSLSIEHGSEKHDLSKAETE--RLVKGIKERELEIKLLNEKNTSLTKQIDQLsKDEVGKLTQIIQQKDLEIQAL 667
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQNLEQKQKElkSKEKELKKLNEEKKELEEKVKDLTKKISSL-KEKIEKLESEKKEKESKISDL 543
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 668 HARISS--------------ASYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQ 733
Cdd:TIGR04523 544 EDELNKddfelkkenlekeiDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
....*...
gi 1907085704 734 DENKKMST 741
Cdd:TIGR04523 624 KENEKLSS 631
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
606-1216 |
2.62e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.16 E-value: 2.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 606 KHDLSKAETERLVKGIKERELEIK-LLNEkntsLTKQIDQLSKD-----EVGKLTQIIQQKDLEIQALHARISSASYSQd 679
Cdd:COG1196 169 KYKERKEEAERKLEATEENLERLEdILGE----LERQLEPLERQaekaeRYRELKEELKELEAELLLLKLRELEAELEE- 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 680 vvyLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKmstrfESSGQDMFKETIQNLS 759
Cdd:COG1196 244 ---LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-----LEQDIARLEERRRELE 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 760 RIIREKDIEIDALSQKCQTLLTVLQTSgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQ 839
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEEL---EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAL 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 840 EELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHSIGQ-LCNTKDLLLGKLDIMSPQLSSGSSL 918
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEaAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 919 TSQAAEPLRASQSSEPHESSQLLQQEVDDLRkSLQEKDATIRTLQENNHRLSDSVAASSEVErKEHEQADSEIKQLKEKQ 998
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADY-EGFLEGVKAALLLAGLRGLAGAVAVLIGVE-AAYEAALEAALAAALQN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 999 EVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQAL 1078
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1079 QETNMKFSMM-----LREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1153
Cdd:COG1196 631 RLEAALRRAVtlagrLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907085704 1154 METSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDRE---AKLRKKVSVLEEKL 1216
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPpdlEELERELERLEREI 776
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
114-655 |
3.64e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.58 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 114 KDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDdKMNIIKELTVQKEKL---------THSEQALSDLQLTKQKLEDKV 184
Cdd:pfam15921 266 QDRIEQLISEHEVEITGLTEKASSARSQANSIQS-QLEIIQEQARNQNSMymrqlsdleSTVSQLRSELREAKRMYEDKI 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 185 EDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETqvqnlkQNLSEVEQLN 264
Cdd:pfam15921 345 EELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDT------GNSITIDHLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 265 EHLEQVAFDLRTENEELLEAYEEVRNQLEESVAG--NKQISLEK----TAMLEWEKAPLE--TELCRAEKRVLEEErkyE 336
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiqGKNESLEKvsslTAQLESTKEMLRkvVEELTAKKMTLESS---E 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 337 QTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSieQMDTDHKRTKETLSSSLEEQkqltqlinekeicivkl 416
Cdd:pfam15921 496 RTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL--KNEGDHLRNVQTECEALKLQ----------------- 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 417 keksselQKELDKCAQTLRKN-ETLRQTIEEKDRSLGSMKEENNHLQEEL--ERLREQQSRVVPAPEPRTLdstTELESE 493
Cdd:pfam15921 557 -------MAEKDKVIEILRQQiENMTQLVGQHGRTAGAMQVEKAQLEKEIndRRLELQEFKILKDKKDAKI---RELEAR 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 494 LSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSishtRLFLEKDEEiknLQKTIEQIKA 573
Cdd:pfam15921 627 VSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK----RNFRNKSEE---METTTNKLKM 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 574 QLHEERQD-SQTENS-DIFQETKVQSLSIEHGSEKHDLSKAETerlvkgIKERELEIKLLNEKNTSLTKQiDQLSKDEVG 651
Cdd:pfam15921 700 QLKSAQSElEQTRNTlKSMEGSDGHAMKVAMGMQKQITAKRGQ------IDALQSKIQFLEEAMTNANKE-KHFLKEEKN 772
|
....
gi 1907085704 652 KLTQ 655
Cdd:pfam15921 773 KLSQ 776
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1141-1349 |
3.66e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1141 ERDQVML--ALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALA-AEDREAKLRKKVSVLEEKLV 1217
Cdd:COG4913 247 AREQIELlePIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELArLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1218 SSSNAMENASHQasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQmvlehfqqeekamysAELEKQNHL 1297
Cdd:COG4913 327 ELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA---------------EEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1907085704 1298 LAEWKKKAESLEGKvlsLQERLDEANAALdsaSRLTEQLDLKEEQIEELKKQ 1349
Cdd:COG4913 389 AAALLEALEEELEA---LEEALAEAEAAL---RDLRRELRELEAEIASLERR 434
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
240-577 |
6.37e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 47.52 E-value: 6.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 240 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLeesvagnkqisLEKTAMLEWEKAPLET 319
Cdd:PRK04778 111 ESLLDLIEEDIEQILEELQELLESEE-------KNREEVEQLKDLYRELRKSL-----------LANRFSFGPALDELEK 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 320 ELcraekRVLEEERkyeQTVQELSSACSPDTSALQLEQ--ERLIQLNQ------------EKDF--EIAELKKSIEQM-- 381
Cdd:PRK04778 173 QL-----ENLEEEF---SQFVELTESGDYVEAREILDQleEELAALEQimeeipellkelQTELpdQLQELKAGYRELve 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 382 ---DTDHKRTKETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGS----M 454
Cdd:PRK04778 245 egyHLDHLDIEKEIQDLKEQIDENLALLEELDL--DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDflehA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 455 KEENNHLQEELERLreQQSRVVPAPEprtLDSTTELESELSQLhrikghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKK 534
Cdd:PRK04778 323 KEQNKELKEEIDRV--KQSYTLNESE---LESVRQLEKQLESL-------EKQYDEITERIAEQEIAYSELQEELEEILK 390
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1907085704 535 ELDEFKYQHEQMSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 577
Cdd:PRK04778 391 QLEEIEKEQEKLSEMLQG--LRKDE--LEAREKLERYRNKLHE 429
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
397-675 |
6.59e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.62 E-value: 6.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 397 EEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVV 476
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 477 PAPEPRTLDStTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDefkyQHEQMSISHTRLFLE 556
Cdd:COG1196 302 QDIARLEERR-RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELA----EAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 557 KDEEIKNLQKTIEQIKAQLHEERQDSQTENSdifQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNt 636
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEE---AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA- 452
|
250 260 270
....*....|....*....|....*....|....*....
gi 1907085704 637 SLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSAS 675
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
153-431 |
7.83e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 47.23 E-value: 7.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 153 IKELTVQKEKLTHSEqALSDLQLTKQKLeDKVEDLVDQLSKSEKNNFDIQKENHElrEHIRQNEEELSTVRSELtqsqtq 232
Cdd:PRK05771 33 IEDLKEELSNERLRK-LRSLLTKLSEAL-DKLRSYLPKLNPLREEKKKVSVKSLE--ELIKDVEEELEKIEKEI------ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 233 gssrNVKDDLLKERETQVQNLKQNLSEVEQL------------NEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 300
Cdd:PRK05771 103 ----KELEEEISELENEIKELEQEIERLEPWgnfdldlslllgFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 301 qisleKTAMLEWEKapletelcRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEqERLIQLNQEKDFEIAELKKSIEQ 380
Cdd:PRK05771 179 -----VYVVVVVLK--------ELSDEVEEELKKLGFERLELEEEGTPSELIREIK-EELEEIEKERESLLEELKELAKK 244
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 381 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVK---LKEKSSELQKELDKCA 431
Cdd:PRK05771 245 YLEELLALYEYLEIELERAEALSKFLKTDKTFAIEgwvPEDRVKKLKELIDKAT 298
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
141-826 |
8.72e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.53 E-value: 8.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 141 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQkledkveDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 220
Cdd:pfam12128 228 RDIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHF-------GYKSDETLIASRQEERQETSAELNQLLRTLDDQWK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 221 TVRSELTQ--SQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELlEAYEEVRNQLEESVAG 298
Cdd:pfam12128 301 EKRDELNGelSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERL-KALTGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 299 NKQ-ISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIA----- 372
Cdd:pfam12128 380 RRSkIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNqatat 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 373 -ELKKSIEQMDTDHKRTKETLSSSLEE----QKQLTQL----------INEKEICIVKLKEKSSELQKELDKCAQTLRkn 437
Cdd:pfam12128 460 pELLLQLENFDERIERAREEQEAANAEverlQSELRQArkrrdqaseaLRQASRRLEERQSALDELELQLFPQAGTLL-- 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 438 ETLRQTIEEKDRSLGSMKEENNHLQEELE-----------------RLREQQSRVvpapePRTLDSTTELESELSQLhri 500
Cdd:pfam12128 538 HFLRKEAPDWEQSIGKVISPELLHRTDLDpevwdgsvggelnlygvKLDLKRIDV-----PEWAASEEELRERLDKA--- 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 501 kghlEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQ 580
Cdd:pfam12128 610 ----EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERLN 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 581 DSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKEREL-----EIKLLNEKNTSLTKQIDQLSKDEVGKL-- 653
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLallkaAIAARRSGAKAELKALETWYKRDLASLgv 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 654 -TQIIQQKDLEIQALHARISSASYSQDVV--YLQQQLHAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALI 730
Cdd:pfam12128 766 dPDVIAKLKREIRTLERKIERIAVRRQEVlrYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLE 845
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 731 KLQDENKKMSTRfessgqdmfketiqnLSRIIREKDIEIDALSQkcqtlLTVLQTSGTGSEAGGVNSNQFEELLQERDKL 810
Cdd:pfam12128 846 MERKASEKQQVR---------------LSENLRGLRCEMSKLAT-----LKEDANSEQAQGSIGERLAQLEDLKLKRDYL 905
|
730
....*....|....*.
gi 1907085704 811 KQQVKKMEEWKQQVMT 826
Cdd:pfam12128 906 SESVKKYVEHFKNVIA 921
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
71-466 |
9.00e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.12 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 71 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHvilikdqlskqqsegdsvIKKLKEELAGEKQRTHQLEDDKM 150
Cdd:pfam10174 287 MKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQH------------------IEVLKESLTAKEQRAAILQTEVD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 151 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQ 230
Cdd:pfam10174 349 ALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 231 TQGSSRNVK----DDLLKERETQVQNLKQNLSEVEQlnEHLEQVAfDLRTENEELLEAYEEVRNQLEE------------ 294
Cdd:pfam10174 429 TDSSNTDTAlttlEEALSEKERIIERLKEQREREDR--ERLEELE-SLKKENKDLKEKVSALQPELTEkesslidlkeha 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 295 ---SVAGNKQISLEKTAMLEWEK-----APLETELCRAEKRVLEEERKYE-----QTVQELSSACSPDTSALQLEQERLI 361
Cdd:pfam10174 506 sslASSGLKKDSKLKSLEIAVEQkkeecSKLENQLKKAHNAEEAVRTNPEindriRLLEQEVARYKEESGKAQAEVERLL 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 362 QLNQE-------KDFEIAELKKSI-EQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKE-----LD 428
Cdd:pfam10174 586 GILREvenekndKDKKIAELESLTlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEelmgaLE 665
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1907085704 429 KCAQTL----RKNETLRQTIEEKDRSLGSMK-EENNHLQEELE 466
Cdd:pfam10174 666 KTRQELdatkARLSSTQQSLAEKDGHLTNLRaERRKQLEEILE 708
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
75-507 |
1.06e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 75 LEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQ-----------------SEGDSVIKKLKEELAG 137
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETelcaeaeemrarlaarkQELEEILHELESRLEE 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 138 EKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIrqnEE 217
Cdd:pfam01576 87 EEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI---SE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 218 ELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQL----E 293
Cdd:pfam01576 164 FTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLakkeE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 294 ESVAGNKQISLEKTAMLEWEKAPLETELCRAE-KRVLEEERKYEQTVQELSSACSPDTSALQLEQERLI-------QLNQ 365
Cdd:pfam01576 244 ELQAALARLEEETAQKNNALKKIRELEAQISElQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLdttaaqqELRS 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 366 EKDFEIAELKKSIE-----------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEiciVKLKEKSSELQKELDKCAQTL 434
Cdd:pfam01576 324 KREQEVTELKKALEeetrsheaqlqEMRQKHTQALEELTEQLEQAKRNKANLEKAK---QALESENAELQAELRTLQQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 435 RKNETLRQTIE-----------EKDRSLGSMKEENNHLQEELERLreqqSRVVPAPEPRTLDSTTELESELSQLHRIKGH 503
Cdd:pfam01576 401 QDSEHKRKKLEgqlqelqarlsESERQRAELAEKLSKLQSELESV----SSLLNEAEGKNIKLSKDVSSLESQLQDTQEL 476
|
....
gi 1907085704 504 LEEE 507
Cdd:pfam01576 477 LQEE 480
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
11-457 |
1.39e-04 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 46.22 E-value: 1.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 11 SLAEDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHN---LEAKEQELNQSIH 87
Cdd:pfam05622 11 ELAQRCHELDQQVSLLQEEKNSLQQENKKLQERLDQLESGDDSGTPGGKKYLLLQKQLEQLQEEnfrLETARDDYRIKCE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 88 ENEILMAEL----EELDKQNQEAT--KHVILI----KDQLSKQQSEGDSVIKKLkEELAGEKQRTHQLEDDKMNIIKELT 157
Cdd:pfam05622 91 ELEKEVLELqhrnEELTSLAEEAQalKDEMDIlresSDKVKKLEATVETYKKKL-EDLGDLRRQVKLLEERNAEYMQRTL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 158 VQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHEL------REHIRQNEEELSTVRSELTQSQT 231
Cdd:pfam05622 170 QLEEELKKANALRGQLETYKRQVQELHGKLSEESKKADKLEFEYKKLEEKLealqkeKERLIIERDTLRETNEELRCAQL 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 232 QGSSRNVKDDLLKERETQVQNLKQNLSEVEqLNEHLEQvafdLRTENEELLEAYEEVRNQLEESVagnkQISLEKTamlE 311
Cdd:pfam05622 250 QQAELSQADALLSPSSDPGDNLAAEIMPAE-IREKLIR----LQHENKMLRLGQEGSYRERLTEL----QQLLEDA---N 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 312 WEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEiAELKKSIEQMDTdhkRTKET 391
Cdd:pfam05622 318 RRKNELETQNRLANQRILELQQQVEELQKALQEQGSKAEDSSLLKQKLEEHLEKLHEAQ-SELQKKKEQIEE---LEPKQ 393
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 392 LSSSLEEQKQLTQLINEKEICIVKLK-------EKSSELQKELDKCAQTLRKNE--TLRQTIEEKDRSLGSMKEE 457
Cdd:pfam05622 394 DSNLAQKIDELQEALRKKDEDMKAMEerykkyvEKAKSVIKTLDPKQNPASPPEiqALKNQLLEKDKKIEHLERD 468
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
2-308 |
1.40e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 46.99 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQD---ISLAEDNQKLQmcvQTLEKEKSLLSQEKEELQIslsklssEYEVIKSTATRDLDLFSQVHDLKhnleaK 78
Cdd:COG5022 802 LLSLLGSRkeyRSYLACIIKLQ---KTIKREKKLRETEEVEFSL-------KAEVLIQKFGRSLKAKKRFSLLK-----K 866
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 79 EQELNQSIHENEILMAELEELDKQNQEATkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLeddKMNIIKELTV 158
Cdd:COG5022 867 ETIYLQSAQRVELAERQLQELKIDVKSIS--------SLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKK 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 159 QKEKLTHSEQalSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNV 238
Cdd:COG5022 936 LLNNIDLEEG--PSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQE 1013
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 239 KDDLLKERETQVQNLKQNL-------SEVEQLNEhLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTA 308
Cdd:COG5022 1014 STKQLKELPVEVAELQSASkiissesTELSILKP-LQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST 1089
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
811-1364 |
1.79e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 811 KQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKNFGQELAQVQHS 890
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 891 IGQLCNTKDLLLGKLDIM---SPQLSSGSSLTSQAAEPLRASQSS----------EPHESSQLLQQEVDDLRKSLQEKDA 957
Cdd:TIGR02169 394 LEKLKREINELKRELDRLqeeLQRLSEELADLNAAIAGIEAKINEleeekedkalEIKKQEWKLEQLAADLSKYEQELYD 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 958 TIRTLQENNHRLSDsvaASSEVERKEHEQADSEIKQLKEKQEVLqnLLKEKDLLIKAKSDQLHSSNEN------------ 1025
Cdd:TIGR02169 474 LKEEYDRVEKELSK---LQRELAEAEAQARASEERVRGGRAVEE--VLKASIQGVHGTVAQLGSVGERyataievaagnr 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1026 LANKVNENELL-RQAVTNLKERIL--------------ILEMDISKLKGENEKIVDA----SKGKETEYQALQETNM--- 1083
Cdd:TIGR02169 549 LNNVVVEDDAVaKEAIELLKRRKAgratflplnkmrdeRRDLSILSEDGVIGFAVDLvefdPKYEPAFKYVFGDTLVved 628
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1084 ---------KFSMMLREKE-FE-------CHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVM 1146
Cdd:TIGR02169 629 ieaarrlmgKYRMVTLEGElFEksgamtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELS 708
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1147 LALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAEDREAKLRKKVSVLEEKLVSSSNAMEN- 1225
Cdd:TIGR02169 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE----QEIENVKSELKELEARIEELEEDLHKLEEALNDl 784
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1226 ASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQ------QEEKAMYSAELEKQNHLLA 1299
Cdd:TIGR02169 785 EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQeqridlKEQIKSIEKEIENLNGKKE 864
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 1300 EWKKKAESLEGKVLSLQERLDEANAALDsasRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKL 1364
Cdd:TIGR02169 865 ELEEELEELEAALRDLESRLGDLKKERD---ELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1231-1363 |
1.84e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 45.73 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1231 SVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLehfqqeekAMYSAELEKQNHLLAEWKKKAESLEG 1310
Cdd:PRK09039 45 SREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASL--------SAAEAERSRLQALLAELAGAGAAAEG 116
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 1311 KVLSLQERLDEANAALDSASRlteQLDLKEEQIEELKKQNELHQEMLDDAQKK 1363
Cdd:PRK09039 117 RAGELAQELDSEKQVSARALA---QVELLNQQIAALRRQLAALEAALDASEKR 166
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1111-1374 |
1.93e-04 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 46.43 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1111 KEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ-----RLRDHLL 1185
Cdd:PLN02939 120 KDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSETDARIKlaaqeKIHVEIL 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1186 ESEDSHTREALAAE-----DREAKLRKKVSVLEEKLVSSSNAMEnASHQASVQVESLQEQLNMVSKQRD--ETALQ---- 1254
Cdd:PLN02939 200 EEQLEKLRNELLIRgategLCVHSLSKELDVLKEENMLLKDDIQ-FLKAELIEVAETEERVFKLEKERSllDASLReles 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1255 -LSVSQEQV------KQYAL--SLANLQMVLEhfQQEEKAMYSAELEKQNHllaewkkkaeSLEGKVLSLQERLDEANAA 1325
Cdd:PLN02939 279 kFIVAQEDVsklsplQYDCWweKVENLQDLLD--RATNQVEKAALVLDQNQ----------DLRDKVDKLEASLKEANVS 346
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1907085704 1326 LDSASR---LTEQLDLKEEQI----EELKKQNELHQEMLDDAQKKLMSLVNSTEGK 1374
Cdd:PLN02939 347 KFSSYKvelLQQKLKLLEERLqasdHEIHSYIQLYQESIKEFQDTLSKLKEESKKR 402
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
240-824 |
2.13e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 240 DDLLKEREtqvQNLKQNLSEVEQLNEHLEQVAFDLRtENEELLEAYEEVRNQLEESvagNKQISLEKTAMLEWEKAPLET 319
Cdd:PRK03918 192 EELIKEKE---KELEEVLREINEISSELPELREELE-KLEKEVKELEELKEEIEEL---EKELESLEGSKRKLEEKIREL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 320 ELCRAEKRvlEEERKYEQTVQELSSacspdtsalqleqerlIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQ 399
Cdd:PRK03918 265 EERIEELK--KEIEELEEKVKELKE----------------LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 400 KQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgSMKEENNHLQEELERLREQQSRvvpap 479
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELER---LKKRLTGLTPEKLEKELEELEK----- 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 480 eprtldSTTELESELSQLHRIKGHLEEEIKHHQKMIEDqnqsKLQLLQSLQEQKKELDEfkyQHEQmsishtRLFLEKDE 559
Cdd:PRK03918 399 ------AKEEIEEEISKITARIGELKKEIKELKKAIEE----LKKAKGKCPVCGRELTE---EHRK------ELLEEYTA 459
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 560 EIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSL--------SIEHGSEKHDLSKAETE-RLVKGIKERELEIKl 630
Cdd:PRK03918 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLkelaeqlkELEEKLKKYNLEELEKKaEEYEKLKEKLIKLK- 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 631 lnEKNTSLTKQIDQLS--KDEVGKLTQIIQQKDLEIQALHARISSASYS--QDVVYLQQQLHAYAMEREKVMVILNEKTR 706
Cdd:PRK03918 539 --GEIKSLKKELEKLEelKKKLAELEKKLDELEEELAELLKELEELGFEsvEELEERLKELEPFYNEYLELKDAEKELER 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 707 ENSQLKTEYHKvidiISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLltvlqts 786
Cdd:PRK03918 617 EEKELKKLEEE----LDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEEL------- 685
|
570 580 590
....*....|....*....|....*....|....*...
gi 1907085704 787 gtgseaggvnSNQFEELLQERDKLKQQVKKMEEWKQQV 824
Cdd:PRK03918 686 ----------EKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
128-301 |
2.16e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 128 IKKLKEELAGEKQRTHQLEDDkmniIKELTVQKEKLTHSEQALSDL------QLTKQKLEDKVEDLVDQLSKSEKNNFDI 201
Cdd:COG4913 612 LAALEAELAELEEELAEAEER----LEALEAELDALQERREALQRLaeyswdEIDVASAEREIAELEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 202 QkenhELREHIRQNEEELSTVRSELTQSQTQgssRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEEL 281
Cdd:COG4913 688 A----ALEEQLEELEAELEELEEELDELKGE---IGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALG 760
|
170 180
....*....|....*....|
gi 1907085704 282 LEAYEEVRNQLEESVAGNKQ 301
Cdd:COG4913 761 DAVERELRENLEERIDALRA 780
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1121-1356 |
2.60e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1121 LNQLLNAVKSMQEKTVTFQQERdqvmlaLKQKQMETSTLQNEVQRLRDK------ESRLNQELQRLRDhlLESEdshtre 1194
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQ------LPELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSE--LESQ------ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1195 ALAAEDREAKLRKKVSVLEEKLVSSSNAMENAShqASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQM 1274
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELL--QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1275 VLehfqQEEKAMYSAELEKQnhlLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEE-LKKQNELH 1353
Cdd:COG3206 306 QL----QQEAQRILASLEAE---LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESlLQRLEEAR 378
|
...
gi 1907085704 1354 QEM 1356
Cdd:COG3206 379 LAE 381
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
14-294 |
2.63e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 14 EDNQKLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEyevIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENEILM 93
Cdd:TIGR04523 405 KLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSE---IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIK 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 94 AELEELDKQNQEATKHVilikDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQalsdl 173
Cdd:TIGR04523 482 QNLEQKQKELKSKEKEL----KKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDF----- 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 174 QLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTqsqtqgssrnvkddllkERETQVQNL 253
Cdd:TIGR04523 553 ELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIE-----------------EKEKKISSL 615
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1907085704 254 KQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEE 294
Cdd:TIGR04523 616 EKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
352-671 |
2.92e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 352 ALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLsssLEEQKQLTQLINEkeicivkLKEKSSELQKELDKCA 431
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL---EELELELEEAQAE-------EYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 432 QTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQsrvvpapeprtldstTELESELSQLHRIKGHLEEEIKHH 511
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEEL---------------EEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 512 QKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQ 591
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 592 ETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARI 671
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
981-1248 |
3.14e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 981 RKEHEQADSEI---KQLKEKQEVLQNLLkEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERIlilEMDISKL 1057
Cdd:pfam17380 302 RQEKEEKAREVerrRKLEEAEKARQAEM-DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEI---AMEISRM 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1058 KgENEKIVDASKGKETEYQALQETNMKFSMMLREKEfecHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVT 1137
Cdd:pfam17380 378 R-ELERLQMERQQKNERVRQELEAARKVKILEEERQ---RKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1138 FQQERDQVMLALKQKQMEtstlQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLV 1217
Cdd:pfam17380 454 EEQERQQQVERLRQQEEE----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270
....*....|....*....|....*....|....*.
gi 1907085704 1218 SSSNAMENASHQASVQVE-----SLQEQLNMVSKQR 1248
Cdd:pfam17380 530 YEEERRREAEEERRKQQEmeerrRIQEQMRKATEER 565
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1160-1327 |
3.23e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1160 QNEVQRLRDKESRLNQELQRLRDHLLESEDSHT---REALAAEDREAKLRKKVSVLEEKLVSSSNAM--ENASHQASVQV 1234
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRLVemaRELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIERYQADL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1235 ESLQEQL---NMVSK----QRDETALQLSVSQEQVKQYALSLANLQMVLE-------HFQQEEKAMYSAE---------L 1291
Cdd:PRK04863 358 EELEERLeeqNEVVEeadeQQEENEARAEAAEEEVDELKSQLADYQQALDvqqtraiQYQQAVQALERAKqlcglpdltA 437
|
170 180 190
....*....|....*....|....*....|....*.
gi 1907085704 1292 EKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALD 1327
Cdd:PRK04863 438 DNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHS 473
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
980-1361 |
3.23e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 45.27 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 980 ERKEHEQADSEIKQLKEKQEVLQNLLKE-----KDLLIKAKSDQLHSSNENLANKVNENELLRQaVTNLKERILILEMDI 1054
Cdd:pfam07888 11 EESHGEEGGTDMLLVVPRAELLQNRLEEclqerAELLQAQEAANRQREKEKERYKRDREQWERQ-RRELESRVAELKEEL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1055 SKLKGENEKIVDASKGKETEYQALQEtnmKFSMMLREKEFECHSMREKALAFeQLLKEKEQGKAGELNQLLNAVKSMQEK 1134
Cdd:pfam07888 90 RQSREKHEELEEKYKELSASSEELSE---EKDALLAQRAAHEARIRELEEDI-KTLTQRVLERETELERMKERAKKAGAQ 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1135 TVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTrEALAAEDREAKLRKKVSVLEE 1214
Cdd:pfam07888 166 RKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLT-TAHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1215 KLVSSSNAmenashqasvqVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLE----HFQQEEKAMY-SA 1289
Cdd:pfam07888 245 RLNASERK-----------VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALRegraRWAQERETLQqSA 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1290 ELEKQN--HLLAEWKKKAESLEG--------KVLSLQER-------------LDEANAALDSASRLTEQLDLKEEQIEEL 1346
Cdd:pfam07888 314 EADKDRieKLSAELQRLEERLQEermereklEVELGREKdcnrvqlsesrreLQELKASLRVAQKEKEQLQAEKQELLEY 393
|
410
....*....|....*
gi 1907085704 1347 KKQNELHQEMLDDAQ 1361
Cdd:pfam07888 394 IRQLEQRLETVADAK 408
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
973-1210 |
3.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 973 VAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEM 1052
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1053 DISKLKGENEKIVDASKGKETEYQALQETNmKFSMMLREKEFechsmrEKALAFEQLLKEKEQGKAGELNQLLNAVKSMQ 1132
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQP-PLALLLSPEDF------LDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1133 EKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLR---DHLLESEDSHTREALAAEDREAKLRKKV 1209
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelAELQQEAEELEALIARLEAEAAAAAERT 243
|
.
gi 1907085704 1210 S 1210
Cdd:COG4942 244 P 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
141-860 |
4.01e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 4.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 141 RTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELS 220
Cdd:pfam02463 200 LKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 221 TVRSELTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNK 300
Cdd:pfam02463 280 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEE 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 301 QISLEKTAMLEWEKApLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQ 380
Cdd:pfam02463 360 ELEKLQEKLEQLEEE-LLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEES 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 381 MDTDhKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNH 460
Cdd:pfam02463 439 IELK-QGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 461 LQEELERLREQQSRVVPAP--EPRTLDSTTELESELSQLHRIKGHLEE-----------EIKHHQKMIEDQNQSKLQLLQ 527
Cdd:pfam02463 518 DGVGGRIISAHGRLGDLGVavENYKVAISTAVIVEVSATADEVEERQKlvraltelplgARKLRLLIPKLKLPLKSIAVL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 528 SLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKH 607
Cdd:pfam02463 598 EIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLE 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 608 DLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQALHARISSASYSQDVVYLQQQL 687
Cdd:pfam02463 678 IQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRL 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 688 HAYAMEREKVMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKlqDENKKMSTRFESSGQDMFKETIQNLSRIIREKDI 767
Cdd:pfam02463 758 KKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEE--ELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 768 EIDALsqkcqtLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQA 847
Cdd:pfam02463 836 EELAL------ELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKL 909
|
730
....*....|...
gi 1907085704 848 QVSVDSDNNSKLQ 860
Cdd:pfam02463 910 NLLEEKENEIEER 922
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1152-1367 |
4.07e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 4.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1152 KQMETSTLQNE-VQRLRDKESRLNQ--------ELQRLRDHLLESEDshtrEALAAEDREAKLRKKVSVLEEKLvsssNA 1222
Cdd:TIGR02168 200 RQLKSLERQAEkAERYKELKAELRElelallvlRLEELREELEELQE----ELKEAEEELEELTAELQELEEKL----EE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1223 MENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEekamysaeLEKQNHLLAEWK 1302
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK--------LDELAEELAELE 343
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 1303 KKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKLMSL 1367
Cdd:TIGR02168 344 EKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
133-334 |
4.45e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 4.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 133 EELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHI 212
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 213 RQNEEELSTVRSELTQSQTQG------SSRNVKD---------DLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTE 277
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPplalllSPEDFLDavrrlqylkYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 278 NEEL------LEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERK 334
Cdd:COG4942 180 LAELeeeraaLEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
928-1378 |
4.86e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 4.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 928 ASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAAS---SEVERKEHEQADSEIKQLKEKQEVLQNL 1004
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAeekAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1005 --LKEKDLLIKAKSDQLHSSN------ENLANKVNENELLRQAVTNLKERiliLEMDISKLKGENEKIVDASKGKETEYQ 1076
Cdd:PTZ00121 1394 deAKKKAEEDKKKADELKKAAaakkkaDEAKKKAEEKKKADEAKKKAEEA---KKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1077 ALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMET 1156
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1157 STLQNEVQRLRDK---------ESRLNQELQRlRDHLLESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENAS 1227
Cdd:PTZ00121 1551 LKKAEELKKAEEKkkaeeakkaEEDKNMALRK-AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1228 hqasvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLL--AEWKKKA 1305
Cdd:PTZ00121 1630 -----EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKA 1704
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 1306 ESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEqiEELKKQNELHQEmlDDAQKKLMSLVNSTEGKVDKV 1378
Cdd:PTZ00121 1705 EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE--EDKKKAEEAKKD--EEEKKKIAHLKKEEEKKAEEI 1773
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
330-640 |
5.12e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 330 EEERKYEQTVQELSsacspdtsaLQLEQERLIQLNQEKDFEI--AELKKSIEQMDTDHKRTKETLSSSLEEQKQltqlin 407
Cdd:COG5022 810 KEYRSYLACIIKLQ---------KTIKREKKLRETEEVEFSLkaEVLIQKFGRSLKAKKRFSLLKKETIYLQSA------ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 408 ekeICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSL-GSMKEENNHLQEELERL----REQQSRVVPAPEPR 482
Cdd:COG5022 875 ---QRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLsSDLIENLEFKTELIARLkkllNNIDLEEGPSIEYV 951
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 483 TLDSTTELESELSQLHRIKGHLEEEIKHHQKMIED---QNQSKLQLLQSLQEQKKELDEFKYQHEQMSI-SHTRLFLEKD 558
Cdd:COG5022 952 KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREgnkANSELKNFKKELAELSKQYGALQESTKQLKElPVEVAELQSA 1031
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 559 EEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGsekHDLSKAETERLVKGIKERELEIKLLNEKNTSL 638
Cdd:COG5022 1032 SKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRENS---LLDDKQLYQLESTENLLKTINVKDLEVTNRNL 1108
|
..
gi 1907085704 639 TK 640
Cdd:COG5022 1109 VK 1110
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
377-1327 |
5.16e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 5.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 377 SIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRslgsmkE 456
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLN------E 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 457 ENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKEL 536
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 537 DEFKYQHEqmsishtrlflEKDEEIKNLQKTIEQIKAQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETER 616
Cdd:pfam02463 317 KESEKEKK-----------KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESER 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 617 LVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEvgkltqiIQQKDLEIQALHARISSASYSQDVVYLQQQLHAYAMEREK 696
Cdd:pfam02463 386 LSSAAKLKEEELELKSEEEKEAQLLLELARQLE-------DLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 697 VMVILNEKTRENSQLKTEYHKVIDIISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLSRIIrekdieidalsQKC 776
Cdd:pfam02463 459 KLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI-----------ISA 527
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 777 QTLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNN 856
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQ 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 857 SKLQVDYTGLIQS-------YEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAS 929
Cdd:pfam02463 608 LDKATLEADEDDKrakvvegILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAES 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 930 QSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKD 1009
Cdd:pfam02463 688 ELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1010 LLIKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMML 1089
Cdd:pfam02463 768 ELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQK 847
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1090 REKEFECHSMREKALAFEQLLKEKEQGKAGELNQ--LLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLR 1167
Cdd:pfam02463 848 LEKLAEEELERLEEEITKEELLQELLLKEEELEEqkLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA 927
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1168 DKESRLNQELQRLRDHLLESEDshtreaLAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQ 1247
Cdd:pfam02463 928 EILLKYEEEPEELLLEEADEKE------KEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLE 1001
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1248 RDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMY---SAELEKQN-------------HLLAEWKKKAESLEGK 1311
Cdd:pfam02463 1002 EEKKKLIRAIIEETCQRLKEFLELFVSINKGWNKVFFYLElggSAELRLEDpddpfsggieisaRPPGKGVKNLDLLSGG 1081
|
970 980 990
....*....|....*....|....*....|..
gi 1907085704 1312 ---------VLSLQER-------LDEANAALD 1327
Cdd:pfam02463 1082 ektlvalalIFAIQKYkpapfylLDEIDAALD 1113
|
|
| CagA_N |
pfam18971 |
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial ... |
75-309 |
5.29e-04 |
|
CagA protein; The Helicobacter pylori type IV secretion effector CagA is a major bacterial virulence determinant and critical for gastric carcinogenesis. X-ray crystallographic analysis of the N-terminal CagA fragment (residues 1-876) revealed that the region has a structure comprised of three discrete domains. Domain I constitutes a mobile CagA N terminus, while Domain II tethers CagA to the plasma membrane by interacting with membrane phosphatidylserine. Domain III interacts intramolecularly with the intrinsically disordered C-terminal region, and this interaction potentiates the pathogenic scaffold/hub function of CagA.
Pssm-ID: 408741 [Multi-domain] Cd Length: 876 Bit Score: 44.76 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 75 LEAKEQELNQSIHENEILMAELEElDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIK 154
Cdd:pfam18971 612 VKKAQKDLEKSLRKREHLEKEVEK-KLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRELSD 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 155 ELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNnFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGS 234
Cdd:pfam18971 691 KLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKD-LGINPEWISKVENLNAALNEFKNGKNKDFSKVTQAK 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 235 S---RNVKDDLLKERET-QVQNLKQNLSEVEQLNE--HLEQVAFDLRTENEELL----------------EAYEEVRNQL 292
Cdd:pfam18971 770 SdleNSVKDVIINQKVTdKVDNLNQAVSVAKAMGDfsRVEQVLADLKNFSKEQLaqqaqknedfntgknsELYQSVKNSV 849
|
250
....*....|....*..
gi 1907085704 293 EESVAGNKQISLEKTAM 309
Cdd:pfam18971 850 NKTLVGNGLSGIEATAL 866
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
18-848 |
7.06e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.65 E-value: 7.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 18 KLQMCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIkstatrdldlfsQVHDLKHNLEAKEQELNQSIHeneilmaELE 97
Cdd:TIGR00606 323 DCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRH------------QEHIRARDSLIQSLATRLELD-------GFE 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 98 ELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQLTK 177
Cdd:TIGR00606 384 RGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKEL 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 178 QKLEDKVEDLVDQLSKSEKNNFDIQK-ENHELREHIRQNEEELSTVRSELTQSQTQGSSRNVKDDLLKERETQVQNL-KQ 255
Cdd:TIGR00606 464 QQLEGSSDRILELDQELRKAERELSKaEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLtKD 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 256 NLSEVEQLNEHLEQVAFDLRTeneelLEAYEEVRNQLEE---SVAGNKQISLEKTAMLEWEKAPLET---ELCRAEKRVL 329
Cdd:TIGR00606 544 KMDKDEQIRKIKSRHSDELTS-----LLGYFPNKKQLEDwlhSKSKEINQTRDRLAKLNKELASLEQnknHINNELESKE 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 330 EEERKYEQTVQELSSaCSPDTSALQLEQERLIQLNQEKDF---EIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLI 406
Cdd:TIGR00606 619 EQLSSYEDKLFDVCG-SQDEESDLERLKEEIEKSSKQRAMlagATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFI 697
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 407 NEKEICIV----KLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLR---EQQSRVVPAP 479
Cdd:TIGR00606 698 SDLQSKLRlapdKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndiEEQETLLGTI 777
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 480 EPRtLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKEldefkyqheqmsishtrlflEKDE 559
Cdd:TIGR00606 778 MPE-EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQ--------------------EKQH 836
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 560 EIKNLQKTIEQIKaQLHEERQDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLt 639
Cdd:TIGR00606 837 ELDTVVSKIELNR-KLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL- 914
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 640 kqiDQLSKDEVGKLTQIIQQKDLEIQALHARIssasysQDVVYLQQQLHAYAMEREKvmVILNEKTRENSQLKTEYHKVI 719
Cdd:TIGR00606 915 ---ETFLEKDQQEKEELISSKETSNKKAQDKV------NDIKEKVKNIHGYMKDIEN--KIQDGKDDYLKQKETELNTVN 983
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 720 DIISAKEAALIKLQDENKKMSTRFESSGQdmfKETIQNLSRIIREKDIEIDALSQKCQTLLtvlqtsgtgseaGGVNSNQ 799
Cdd:TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKI---QERWLQDNLTLRKRENELKEVEEELKQHL------------KEMGQMQ 1048
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1907085704 800 FEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQ 848
Cdd:TIGR00606 1049 VLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFR 1097
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1105-1334 |
7.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1105 AFEQLLKEKEQGKA-GELNQLLNAVKSMQEKTVTFQQERDqvMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDH 1183
Cdd:COG4913 240 AHEALEDAREQIELlEPIRELAERYAAARERLAELEYLRA--ALRLWFAQRRLELLEAELEELRAELARLEAELERLEAR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1184 LLESEDSHT--REALAAE--DREAKLRKKVSVLEEKLvsssnamenasHQASVQVESLQEQLNMVSKQRDETALQLSVSQ 1259
Cdd:COG4913 318 LDALREELDelEAQIRGNggDRLEQLEREIERLEREL-----------EERERRRARLEALLAALGLPLPASAEEFAALR 386
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 1260 EQVKQYALSLANLQMVLehfqQEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTE 1334
Cdd:COG4913 387 AEAAALLEALEEELEAL----EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGLDE 457
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2-446 |
7.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 7.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDISLAEDNQKLqmcVQTLEKEKSLLSQEKEELQISLSKLSSEYevikstatRDLDLFSQVHDLKHNLEAKEQE 81
Cdd:COG4717 72 ELKELEEELKEAEEKEEE---YAELQEELEELEEELEELEAELEELREEL--------EKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 82 LNQSIHENEILMAELEELDkqnqeatkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMN-IIKELTVQK 160
Cdd:COG4717 141 LAELPERLEELEERLEELR---------------ELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 161 EKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNN---------------FDIQKENHELREHIRqNEEELSTVRSE 225
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEErlkearlllliaaalLALLGLGGSLLSLIL-TIAGVLFLVLG 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 226 LTQSQTQGSSRNVKDDLLKERETQVQNLKQNLSEvEQLNEHLEQVAFDLRTENEELLEAY---EEVRNQLEESVAGNKQI 302
Cdd:COG4717 285 LLALLFLLLAREKASLGKEAEELQALPALEELEE-EELEELLAALGLPPDLSPEELLELLdriEELQELLREAEELEEEL 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 303 SL-----EKTAMLEWEKAPLETELcraeKRVLEEERKYEQTVQELSSAcspdtsALQLEQERLIQLNQEKDFEIAELKKS 377
Cdd:COG4717 364 QLeeleqEIAALLAEAGVEDEEEL----RAALEQAEEYQELKEELEEL------EEQLEELLGELEELLEALDEEELEEE 433
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1907085704 378 IEQMDTDHKRTKETLSSSLEEQKQLTQLIN--EKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEE 446
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
71-518 |
8.42e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 71 LKHNLEAKEQELNQSIHENEILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKM 150
Cdd:pfam05483 224 IQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKM 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 151 NIIKELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELT--- 227
Cdd:pfam05483 304 SLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKiit 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 228 -QSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQL---NEHLEQVAFDLRTENEEL---LEAYEEVRNQLEESVAGNK 300
Cdd:pfam05483 384 mELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIAEELKGKEQELiflLQAREKEIHDLEIQLTAIK 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 301 QISLEKTAMLEWEKAPLETELCRAekrvleeerkyeqtvQELSSACSpdtsALQLEQERLIQlnqEKDFEIAELKKSIEQ 380
Cdd:pfam05483 464 TSEEHYLKEVEDLKTELEKEKLKN---------------IELTAHCD----KLLLENKELTQ---EASDMTLELKKHQED 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 381 MDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLR-------KNETLRQTIEEKDRSLGS 453
Cdd:pfam05483 522 IINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARsieyevlKKEKQMKILENKCNNLKK 601
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 454 MKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 518
Cdd:pfam05483 602 QIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDK 666
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
985-1359 |
8.62e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 8.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 985 EQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSNENLANKVNENELLRQ----AVTNLKERILILEMDISKLkge 1060
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEkreyEGYELLKEKEALERQKEAI--- 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1061 nekivdaskgkETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQ 1140
Cdd:TIGR02169 243 -----------ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1141 ERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLEsedshtrealAAEDREAKLRKKVSVLEEklvsss 1220
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE----------EYAELKEELEDLRAELEE------ 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1221 namENASHQASVQ-VESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYS------AELEK 1293
Cdd:TIGR02169 376 ---VDKEFAETRDeLKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEekedkaLEIKK 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907085704 1294 QNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEMLDD 1359
Cdd:TIGR02169 453 QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518
|
|
| GRAB |
pfam10375 |
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type ... |
1370-1415 |
8.92e-04 |
|
GRAB domain; The GRAB (GRIP-related Arf-binding) domain is towards the C-terminus of Rud3 type proteins. This domain is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The Arf small GTPase is localized to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane.
Pssm-ID: 431241 Cd Length: 49 Bit Score: 38.75 E-value: 8.92e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 1907085704 1370 STEGKVDKVLMRNLFIGHFHTPK--HQRHEVLRLMGSILGVKREEMEQ 1415
Cdd:pfam10375 1 SSEDTVDRQLVTNLLLSFLSIPRgdTKKFEILQLIANLLEWDDEQREQ 48
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
249-486 |
1.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 249 QVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISlEKTAMLEWEKAPLETELCRAEKRV 328
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALE-QELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 329 LEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFE---IAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQL 405
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLkylAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 406 INEkeicivkLKEKSSELQKELDKCAQTLRKnetLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLD 485
Cdd:COG4942 180 LAE-------LEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249
|
.
gi 1907085704 486 S 486
Cdd:COG4942 250 A 250
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
189-421 |
1.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 189 DQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQSQTQGSSRNvkdDLLKERETQVQNLKQNLSEVEQLNEHLE 268
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA---RRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 269 QVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKApleteLCRAEKRVLEEERKYEQTVQELSSACSP 348
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----LAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1907085704 349 DTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKEKSS 421
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
372-1349 |
1.37e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 372 AELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQT--LRKNETLRQTIEEKDR 449
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRERE-----KAERYQALLKEKREYEGYelLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 450 SLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSL 529
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 530 QEQKKELDEFKYQHEQMSISHTRLFLEKD---EEIKNLQKTIEQIKAQLHEERQDSQTensdIFQETKVQSLSIEHGSEK 606
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAE----TRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 607 HDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDevgkltqiIQQKDLEIQALHARISSasysqdvvyLQQQ 686
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEE--------KEDKALEIKKQEWKLEQ---------LAAD 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 687 LHAYAMEREKVMVILNEKTRENSQLKTEYhkviDIISAKEAALIKLQDENKKMSTRFESSGQDMFKeTIQNLSRIIREKD 766
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQREL----AEAEAQARASEERVRGGRAVEEVLKASIQGVHG-TVAQLGSVGERYA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 767 IEID-ALSQKCQTLltVLQTSGTGSEAggvnsnqfEELLQERdklkqqvkKMEEWKQQVMTTVQNMQHESAQLQEELHQL 845
Cdd:TIGR02169 539 TAIEvAAGNRLNNV--VVEDDAVAKEA--------IELLKRR--------KAGRATFLPLNKMRDERRDLSILSEDGVIG 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 846 QAQVSVDSDNNSKLQVDY----TGLIQSYEQNETKLKNFgqelaqvqhsigQLCNTKDLLLGKLDIMSpqlssGSSLTSQ 921
Cdd:TIGR02169 601 FAVDLVEFDPKYEPAFKYvfgdTLVVEDIEAARRLMGKY------------RMVTLEGELFEKSGAMT-----GGSRAPR 663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 922 AAEPLRASQSSEPHESSQLLQqEVDDLRKSLQEKDATIRtlqennhRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVL 1001
Cdd:TIGR02169 664 GGILFSRSEPAELQRLRERLE-GLKRELSSLQSELRRIE-------NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1002 QNLLKEKDLLIKAKSDQLhssnenlankvnenELLRQAVTNLKERILILEMDISKLKGENEKIVDASKG-----KETEYQ 1076
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEI--------------ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsripeIQAELS 801
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1077 ALQETNMKFSMMLREKEfechsmreKALAFEQLLKEKEQGKAGELNQLLNAVKSmqektvtfqqerdqvmlalkQKQMET 1156
Cdd:TIGR02169 802 KLEEEVSRIEARLREIE--------QKLNRLTLEKEYLEKEIQELQEQRIDLKE--------------------QIKSIE 853
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1157 STLQNEVQRLRDKESRLNQELQRLRDhlLESEDSHTREalaaeDREaKLRKKVSVLEEKLVSSSNAMENASHQASVQVES 1236
Cdd:TIGR02169 854 KEIENLNGKKEELEEELEELEAALRD--LESRLGDLKK-----ERD-ELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1237 LQEQLNMVSKQRDETALQLSVSQEQvkqyaLSLANLQMVLEHFQQEEKAmysaeLEKQNHLLAEWKKKAEslegkvlslq 1316
Cdd:TIGR02169 926 LEALEEELSEIEDPKGEDEEIPEEE-----LSLEDVQAELQRVEEEIRA-----LEPVNMLAIQEYEEVL---------- 985
|
970 980 990
....*....|....*....|....*....|...
gi 1907085704 1317 ERLDEANAALDSASRLTEQLDLKEEQIEELKKQ 1349
Cdd:TIGR02169 986 KRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
67-202 |
1.38e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 43.28 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 67 QVHDLKHNLEAKEQELNQSIHENEILMAELEELdkqnqeatkhviliKDQLSKQQSEGDSVIKKLKEELAGE-KQRTHQL 145
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKL--------------KEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA 582
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 146 EDDKMNIIKELTvQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKNNFDIQ 202
Cdd:PRK00409 583 KKEADEIIKELR-QLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
797-1023 |
1.43e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 797 SNQFEELLQERDKLKQQVKKMEEWKQQvmttvqnMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETK 876
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAA-------LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 877 LKNFGQELAQVQHSIGQLCNTkDLLLGKLDIMSPQLSSGSSLTS-------QAAEPLRASQSSEPHESSQLLQQEVDDLR 949
Cdd:COG4942 92 IAELRAELEAQKEELAELLRA-LYRLGRQPPLALLLSPEDFLDAvrrlqylKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1907085704 950 KSLQEKDATIRTLQENNHRLSDSVAASSEVE---RKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHSSN 1023
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG 247
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
11-283 |
1.63e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.11 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 11 SLAEDNQKlqmcVQTLEKEKSLLSQEKEELQISLSKLSSeyevIKSTATRDLDLFSQVHDLKHNLEAKEQELNQSIHENE 90
Cdd:PRK02224 469 TIEEDRER----VEELEAELEDLEEEVEEVEERLERAED----LVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 91 ILMAELEELDKQNQEAtkhviliKDQLSKQQSEGDSV---IKKLKEELAGEKQRTHQLED--DKMNIIKELTVQKEKLTH 165
Cdd:PRK02224 541 ELRERAAELEAEAEEK-------REAAAEAEEEAEEAreeVAELNSKLAELKERIESLERirTLLAAIADAEDEIERLRE 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 166 SEQALSDLQ-LTKQKLEDKVEDLVDQLSKSEKNNFDIQKENHE-LREHIRQNEEELSTVRSELTQSQTQ-GSSRNVKDDL 242
Cdd:PRK02224 614 KREALAELNdERRERLAEKRERKRELEAEFDEARIEEAREDKErAEEYLEQVEEKLDELREERDDLQAEiGAVENELEEL 693
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1907085704 243 --LKERETQVQNLKQNL----SEVEQLNEHLEQVAFDLRTENEELLE 283
Cdd:PRK02224 694 eeLRERREALENRVEALealyDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
803-1379 |
1.70e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.24 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 803 LLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLKnfgq 882
Cdd:pfam01576 94 LQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLA---- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 883 ELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRAsQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTL 962
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEG-ESTDLQEQIAELQAQIAELRAQLAKKEEELQAA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 963 QEnnhRLSDSVAASSEVERKeHEQADSEIKQLKEkqevlqnllkekdllikaksdqlhssnenlankvnENELLRQAVTN 1042
Cdd:pfam01576 249 LA---RLEEETAQKNNALKK-IRELEAQISELQE-----------------------------------DLESERAARNK 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1043 LKERILILEMDISKLKGENEKIVDASKgketeyqALQETNMKfsmmlREKEFEC--HSMREKALAFEQLLKEKEQGKAGE 1120
Cdd:pfam01576 290 AEKQRRDLGEELEALKTELEDTLDTTA-------AQQELRSK-----REQEVTElkKALEEETRSHEAQLQEMRQKHTQA 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1121 LNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRDHLLESEdshtREALAAED 1200
Cdd:pfam01576 358 LEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESE----RQRAELAE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1201 REAKLRKKVsvleEKLVSSSNAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHfQ 1280
Cdd:pfam01576 434 KLSKLQSEL----ESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEE-E 508
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1281 QEEKAMYSAELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSasrLTEQLDLKEEQIEELKKQNELHQEMLDDA 1360
Cdd:pfam01576 509 EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEA---LTQQLEEKAAAYDKLEKTKNRLQQELDDL 585
|
570 580
....*....|....*....|....*
gi 1907085704 1361 ------QKKLMSLVNSTEGKVDKVL 1379
Cdd:pfam01576 586 lvdldhQRQLVSNLEKKQKKFDQML 610
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
24-854 |
1.74e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 24 QTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLKHNLEAkeQELNQSIHENEILMAELEELDKQN 103
Cdd:TIGR00618 102 KTEQPEQLYLEQKKGRGRILAAKKSETEEVIHDLLKLDYKTFTRVVLLPQGEFA--QFLKAKSKEKKELLMNLFPLDQYT 179
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 104 QEATkhvilikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDdkmNIIKELTVQKEKLTHSEQALSDLQLTKQKLEDK 183
Cdd:TIGR00618 180 QLAL--------MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPD---TYHERKQVLEKELKHLREALQQTQQSHAYLTQK 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 184 VEDLVDQLSKseknnfdiQKENHELREHIrqneEELSTVRSELTQSQTQgssrnvkddllKERETQVQNLKQNLSEVEQL 263
Cdd:TIGR00618 249 REAQEEQLKK--------QQLLKQLRARI----EELRAQEAVLEETQER-----------INRARKAAPLAAHIKAVTQI 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 264 NEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELS 343
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQ 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 344 SACSPDTSALQLEQERLIQLNQEKDFEIAE-LKKSIEQMDTDHKRTKETLSSSLEEQKQltQLINEKEICIVKLKEKSSE 422
Cdd:TIGR00618 386 QQKTTLTQKLQSLCKELDILQREQATIDTRtSAFRDLQGQLAHAKKQQELQQRYAELCA--AAITCTAQCEKLEKIHLQE 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 423 LQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELErlreqQSRVVPAPEPRTLDSTTELESELSQLHRIKG 502
Cdd:TIGR00618 464 SAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLC-----GSCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 503 HLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLEKDEEIKNLQKTIE---QIKAQLHEER 579
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEaedMLACEQHALL 618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 580 QDSQTENSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQI--- 656
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWkem 698
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 657 IQQKDLEIQALHARISsaSYSQDVVYLQQQLHAYAMEREKVMVILNEKTRENSQLKTEY--HKVIDIISAKEAALIKLQ- 733
Cdd:TIGR00618 699 LAQCQTLLRELETHIE--EYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVlkARTEAHFNNNEEVTAALQt 776
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 734 ----DENKKMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQTLLTVLQTSgtgseaggvnSNQFEELLQERDK 809
Cdd:TIGR00618 777 gaelSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQF----------LSRLEEKSATLGE 846
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1907085704 810 LKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSD 854
Cdd:TIGR00618 847 ITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGINQIKIQFDGD 891
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1107-1356 |
1.80e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 43.12 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1107 EQLLKEKEQGK-------AGELNQLLNAVKS-MQEKTVTFQQERDQV------MLALKQKQMETSTLQNEVqrlrdkESR 1172
Cdd:PRK10929 86 QQLNNERDEPRsvppnmsTDALEQEILQVSSqLLEKSRQAQQEQDRAreisdsLSQLPQQQTEARRQLNEI------ERR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1173 LNQelqrlrdhLLESEDSHTREALAAEDREAKLRK-KVSVLEEKLVSSSNAMENA----------SHQASVQVESLQEQL 1241
Cdd:PRK10929 160 LQT--------LGTPNTPLAQAQLTALQAESAALKaLVDELELAQLSANNRQELArlrselakkrSQQLDAYLQALRNQL 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1242 NMVSKQRDETALqlsvsqEQVKQYALSLANL-QMVLEHFQQEEkaMYSAELEKQNH---LLAEWKKKAESLEGKVLSLQE 1317
Cdd:PRK10929 232 NSQRQREAERAL------ESTELLAEQSGDLpKSIVAQFKINR--ELSQALNQQAQrmdLIASQQRQAASQTLQVRQALN 303
|
250 260 270
....*....|....*....|....*....|....*....
gi 1907085704 1318 RLDEANAALDSASRLTEQLDLKEEQIEELKKQNELHQEM 1356
Cdd:PRK10929 304 TLREQSQWLGVSNALGEALRAQVARLPEMPKPQQLDTEM 342
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
359-580 |
1.90e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 359 RLIQLNQEKD-----------FEIAELKKSIE--------QMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivklKEK 419
Cdd:PRK05771 10 LIVTLKSYKDevlealhelgvVHIEDLKEELSnerlrklrSLLTKLSEALDKLRSYLPKLNPLREEKKKVS------VKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 420 SSELQKELDKcaqtlrknetlrqTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPApepRTLDSTTELESELSQLHR 499
Cdd:PRK05771 84 LEELIKDVEE-------------ELEKIEKEIKELEEEISELENEIKELEQEIERLEPW---GNFDLDLSLLLGFKYVSV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 500 IKGHLEEEIKHHQKMIEDQNQSKLQ-------------LLQSLQEQKKELDEFKYqhEQMSISHTRLFLE----KDEEIK 562
Cdd:PRK05771 148 FVGTVPEDKLEELKLESDVENVEYIstdkgyvyvvvvvLKELSDEVEEELKKLGF--ERLELEEEGTPSElireIKEELE 225
|
250
....*....|....*...
gi 1907085704 563 NLQKTIEQIKAQLHEERQ 580
Cdd:PRK05771 226 EIEKERESLLEELKELAK 243
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
936-1250 |
1.96e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 43.14 E-value: 1.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 936 ESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQAD-SEIKQLKEKQEVLQNLLKEKDLLI-- 1012
Cdd:COG5022 907 EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLhEVESKLKETSEEYEDLLKKSTILVre 986
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1013 -KAKSDQLHSSNENLANKVNENELLRQAVTNLKER---ILILEMDISKLKGEnekivDASKGKETEYQALQETNMKFSMM 1088
Cdd:COG5022 987 gNKANSELKNFKKELAELSKQYGALQESTKQLKELpveVAELQSASKIISSE-----STELSILKPLQKLKGLLLLENNQ 1061
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1089 LREKEFECHSMREKALAFEQLLKEKEQGKaGELNQLLNAVKSMQEKTVTFQQERDQ----VMLALKQKQMETSTLQNEVQ 1164
Cdd:COG5022 1062 LQARYKALKLRRENSLLDDKQLYQLESTE-NLLKTINVKDLEVTNRNLVKPANVLQfivaQMIKLNLLQEISKFLSQLVN 1140
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1165 RLRDKESRLNQELQRLRDHLLESedshTREALAAEDREAKlrkkvsvLEEKLVSSSNAMENASHQASVQVESLQEQL-NM 1243
Cdd:COG5022 1141 TLEPVFQKLSVLQLELDGLFWEA----NLEALPSPPPFAA-------LSEKRLYQSALYDEKSKLSSSEVNDLKNELiAL 1209
|
....*..
gi 1907085704 1244 VSKQRDE 1250
Cdd:COG5022 1210 FSKIFSG 1216
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
924-1153 |
2.13e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 924 EPLRASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEverKEHEQADSEIKQLKEKQEVLQN 1003
Cdd:PRK05771 38 EELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVE---EELEKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1004 ----LLKEKDLLIKAKSdqLHSSNENLankvNENELLRQAVTNLKERILilemDISKLKGENEKIVDASKGKETEY---Q 1076
Cdd:PRK05771 115 eikeLEQEIERLEPWGN--FDLDLSLL----LGFKYVSVFVGTVPEDKL----EELKLESDVENVEYISTDKGYVYvvvV 184
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907085704 1077 ALQETNMKFSMMLREKEFECHSMREKALAFEQL--LKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQ 1153
Cdd:PRK05771 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIreIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERA 263
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1147-1326 |
2.20e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1147 LALKQKQMETstLQNEVQRLRDKESRLNQELQRLRDHL-----LESEDSHTREALAAEDREAKLRKKVsvleEKLVSSSN 1221
Cdd:COG4913 612 LAALEAELAE--LEEELAEAEERLEALEAELDALQERRealqrLAEYSWDEIDVASAEREIAELEAEL----ERLDASSD 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1222 AMEnashQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNHLLAEW 1301
Cdd:COG4913 686 DLA----ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180
....*....|....*....|....*...
gi 1907085704 1302 ---KKKAESLEGKVLSLQERLDEANAAL 1326
Cdd:COG4913 762 aveRELRENLEERIDALRARLNRAEEEL 789
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
84-411 |
2.53e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 84 QSIHENEILMAELEELdkQNQEATKHviliKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNIIKELTVQ---- 159
Cdd:pfam17380 263 QTMTENEFLNQLLHIV--QHQKAVSE----RQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQaaiy 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 160 --KEKLT-HSEQALSDLQLTKQKLED---KVEDLVDQLSKSEKNNfDIQKENHELREHIRQneeELSTVRSELTQSQTQg 233
Cdd:pfam17380 337 aeQERMAmERERELERIRQEERKRELeriRQEEIAMEISRMRELE-RLQMERQQKNERVRQ---ELEAARKVKILEEER- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 234 sSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWE 313
Cdd:pfam17380 412 -QRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAE 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 314 ---KAPLETELCRAEKRVLEEERKYEQTVQELssacspdtsalqleQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKE 390
Cdd:pfam17380 491 eqrRKILEKELEERKQAMIEEERKRKLLEKEM--------------EERQKAIYEEERRREAEEERRKQQEMEERRRIQE 556
|
330 340
....*....|....*....|.
gi 1907085704 391 TLSSSLEEQKQLTQLINEKEI 411
Cdd:pfam17380 557 QMRKATEERSRLEAMEREREM 577
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
23-649 |
2.55e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 23 VQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKSTATRDLDLFSQVHDLK--HNLEAKEQELNQSIHEN---EILMAELE 97
Cdd:TIGR00618 221 KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEelRAQEAVLEETQERINRArkaAPLAAHIK 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 98 ELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRT--HQLEDDKMNIIKELTVQKEKLTHSEQALSDLQL 175
Cdd:TIGR00618 301 AVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRllQTLHSQEIHIRDAHEVATSIREISCQQHTLTQH 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 176 TKQKLEDKvEDLVDQLSKSEKNNFDIQKENHE-LREHIRQNEEELSTVRSELTQSQTQGSSRNVKD------DLLKERET 248
Cdd:TIGR00618 381 IHTLQQQK-TTLTQKLQSLCKELDILQREQATiDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAaitctaQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 249 QVQNLKQNLSEVEQLNEHLEQVAfdLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKAPLETELCRAEKRV 328
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIH--LQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 329 L---EEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQ---------EKDFEIAELKKSIEQMDTDHKRTKETLSSSL 396
Cdd:TIGR00618 538 AqleTSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQcdnrskediPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 397 EEQKQLTQLINEKeicIVKLKEKSSELQKELDKCAQTLRknETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVV 476
Cdd:TIGR00618 618 LRKLQPEQDLQDV---RLHLQQCSQELALKLTALHALQL--TLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 477 PAPEPrtldsttELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE 556
Cdd:TIGR00618 693 TYWKE-------MLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFN 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 557 KDEEIKNLQKTIEQIkAQLHEERQDSQTENSDIFQETKvqSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNT 636
Cdd:TIGR00618 766 NNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLK--TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSA 842
|
650
....*....|...
gi 1907085704 637 SLTKQIDQLSKDE 649
Cdd:TIGR00618 843 TLGEITHQLLKYE 855
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
13-471 |
2.74e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 13 AEDNQKLQMCVQTLEKEKSLlSQEKEELQISLSKLSSEYEVIKSTATRD------------LDLFSQVHDLKHNLEAKEQ 80
Cdd:pfam05557 47 SDRNQELQKRIRLLEKREAE-AEEALREQAELNRLKKKYLEALNKKLNEkesqladareviSCLKNELSELRRQIQRAEL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 81 ELNQSIHENEILMAELEELDKQNQEATKhvilIKDQLSKQQS---EGDSVIKKLKEELAGEKQRTHQLEDDKMNI--IKE 155
Cdd:pfam05557 126 ELQSTNSELEELQERLDLLKAKASEAEQ----LRQNLEKQQSslaEAEQRIKELEFEIQSQEQDSEIVKNSKSELarIPE 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 156 LTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLVDQLSKSEKnnfdiqkenhelrehirqNEEELSTVRSELTQSQTQgss 235
Cdd:pfam05557 202 LEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK------------------YREEAATLELEKEKLEQE--- 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 236 rnvkddlLKERETQVQNLKQNLSEVEQLNEHLEQVafdlrteneelleayeevrnQLEESVAGNKQISLEKTA-MLEWEK 314
Cdd:pfam05557 261 -------LQSWVKLAQDTGLNLRSPEDLSRRIEQL--------------------QQREIVLKEENSSLTSSArQLEKAR 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 315 APLETELCRAEKRVLEEERKYEQTvqelssacspdTSALQLEQERLIQLNQEKDFeiaeLKKSIEQMDTDhKRTKETLSS 394
Cdd:pfam05557 314 RELEQELAQYLKKIEDLNKKLKRH-----------KALVRRLQRRVLLLTKERDG----YRAILESYDKE-LTMSNYSPQ 377
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 395 SLEEQKQLTQLINEKEICIVKLKEKSSELQKEL----DKCAQTLRKNETLRQTIEEKDRSLG-----SMKEENNHLQEEL 465
Cdd:pfam05557 378 LLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELggykQQAQTLERELQALRQQESLADPSYSkeevdSLRRKLETLELER 457
|
....*.
gi 1907085704 466 ERLREQ 471
Cdd:pfam05557 458 QRLREQ 463
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
356-517 |
3.07e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 356 EQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEicivkLKEKSSELQKELDKCAQTLR 435
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 436 KNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMI 515
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
..
gi 1907085704 516 ED 517
Cdd:COG4717 230 EQ 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
90-581 |
3.41e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 90 EILMAELEELDKQNQEATKHVILIKDQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDdKMNIIKELTVQKEKLTHSEQA 169
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEE-LEAELEELREELEKLEKLLQL 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 170 LSDLQlTKQKLEDKVEDLVDQLSKSEKNnfdiQKENHELREHIRQNEEELSTVRSELTQSQTQGSsrnvkddllKERETQ 249
Cdd:COG4717 128 LPLYQ-ELEALEAELAELPERLEELEER----LEELRELEEELEELEAELAELQEELEELLEQLS---------LATEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 250 VQNLKQNLSEVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLE---WEKAPLETELCRAEK 326
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAaalLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 327 RVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLI 406
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 407 NEKEicivklkekssELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVPAPEPRTLDS 486
Cdd:COG4717 354 REAE-----------ELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELL 422
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 487 TTELESEL-SQLHRIKGHLEEEIKHHQKMIEDQnqSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLfLEKDEEIKNLQ 565
Cdd:COG4717 423 EALDEEELeEELEELEEELEELEEELEELREEL--AELEAELEQLEEDGELAELLQELEELKAELREL-AEEWAALKLAL 499
|
490
....*....|....*.
gi 1907085704 566 KTIEQIKAQLHEERQD 581
Cdd:COG4717 500 ELLEEAREEYREERLP 515
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
239-1084 |
3.53e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 3.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 239 KDDLLKERETQVQNLKQNLSEVEQLNEHLEQvafdLRTENEELLEaYEEVRNQLEES----VAGNKQISLEKTAMLEWEK 314
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLER----LRREREKAER-YQALLKEKREYegyeLLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 315 APLETELCRAEKRVLEEERKYEQTVQELSSAcSPDTSALQLEQERLIQLnqekdfEIAELKKSIEQMDTDHKRTKETLSS 394
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVKE------KIGELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 395 SLEEQKQLTQLINEKEICIVKLKEKSSELQKELDKCAQTLRKN----ETLRQTIEEKDRSLGSMKEENNHLQEELERLRE 470
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELkeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 471 QQSRVVpAPEPRTLDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISH 550
Cdd:TIGR02169 400 EINELK-RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 551 TRLflekDEEIKNLQKTIEQIKAQlheeRQDSQTENSDIFQETKVQSLSIE--HGS--------EKHDLS--KAETERLV 618
Cdd:TIGR02169 479 DRV----EKELSKLQRELAEAEAQ----ARASEERVRGGRAVEEVLKASIQgvHGTvaqlgsvgERYATAieVAAGNRLN 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 619 KGIKERELE----IKLLNEKNTS------LTKQIDQLSKDEVGKLTQIIQQKdLEIQALHARISSASYS--QDVVYLQQQ 686
Cdd:TIGR02169 551 NVVVEDDAVakeaIELLKRRKAGratflpLNKMRDERRDLSILSEDGVIGFA-VDLVEFDPKYEPAFKYvfGDTLVVEDI 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 687 LHAYAMEREKVMVILNEKTRENSQLKTEYHKvidiiSAKEAALIKLQDENKKMSTRFESSGQDMFKETIQNLsriIREKD 766
Cdd:TIGR02169 630 EAARRLMGKYRMVTLEGELFEKSGAMTGGSR-----APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSE---LRRIE 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 767 IEIDALSQKCQTLltvlqtsgtgSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQ 846
Cdd:TIGR02169 702 NRLDELSQELSDA----------SRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELE 771
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 847 AQVSvdsdnnsKLQVDYTGLIQSYeqNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPL 926
Cdd:TIGR02169 772 EDLH-------KLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQR 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 927 RASQSSEphessQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEvERKEHEQADSEIKQLKEKQEVLQNLLK 1006
Cdd:TIGR02169 843 IDLKEQI-----KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKR 916
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1007 EKDLLIKAKSDQLHSSNENLANKVNENELLRQAVTNL---KERILILEMDISKLKGENEKIVDASKGKETEYQALQETNM 1083
Cdd:TIGR02169 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLedvQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRA 996
|
.
gi 1907085704 1084 K 1084
Cdd:TIGR02169 997 K 997
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
305-518 |
3.65e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 305 EKTAMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSAcspdTSALQLEQERLIQLNQEKDF---EIAELKKSIEQM 381
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAAleaELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 382 DTDHKRTKETLSSSLEEQKQLTQL-----------INEKEICIVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRS 450
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907085704 451 LGSMKEENNHLQEELERLREQQSRVVPAPEprtlDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQ 518
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLE----KELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
240-577 |
4.71e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.38 E-value: 4.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 240 DDLLKERETQVQNLKQNLSEVEQLNEhleqvafDLRTENEELLEAYEEVRNQLEEsvagnKQISLEKTA-MLEWEKAPLE 318
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEE-------KNREEVEELKDKYRELRKTLLA-----NRFSYGPAIdELEKQLAEIE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 319 TELCRAEKrvLEEERKYEQTVQELSSAcSPDTSALQLEQER----LIQLNQEKDFEIAELKKSIEQM-----DTDHKRTK 389
Cdd:pfam06160 160 EEFSQFEE--LTESGDYLEAREVLEKL-EEETDALEELMEDipplYEELKTELPDQLEELKEGYREMeeegyALEHLNVD 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 390 ETLSSSLEEQKQLTQLINEKEIciVKLKEKSSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSM----KEENNHLQEEL 465
Cdd:pfam06160 237 KEIQQLEEQLEENLALLENLEL--DEAEEALEEIEERIDQLYDLLEKEVDAKKYVEKNLPEIEDYlehaEEQNKELKEEL 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 466 ERLreQQSRVVPAPEprtLDSTTELESELSQlhrikghLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQ 545
Cdd:pfam06160 315 ERV--QQSYTLNENE---LERVRGLEKQLEE-------LEKRYDEIVERLEEKEVAYSELQEELEEILEQLEEIEEEQEE 382
|
330 340 350
....*....|....*....|....*....|..
gi 1907085704 546 MSISHTRlfLEKDEeiKNLQKTIEQIKAQLHE 577
Cdd:pfam06160 383 FKESLQS--LRKDE--LEAREKLDEFKLELRE 410
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
945-1364 |
4.80e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 945 VDDLRKS--LQEKD--ATIRTLQENNHRLSDSVAASSEVERKEH-----EQADSEIKQLKEKQEVLQNLL--------KE 1007
Cdd:COG4913 209 LDDFVREymLEEPDtfEAADALVEHFDDLERAHEALEDAREQIEllepiRELAERYAAARERLAELEYLRaalrlwfaQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1008 KDLLIKAKSDQLhssNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEkivdaskgketeyQALQEtnmkfsm 1087
Cdd:COG4913 289 RLELLEAELEEL---RAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-------------EQLER------- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1088 MLREKEFECHSMREKALAFEQL---LKEKEQGKAGELNQLLNAVKSMQEKTVT----FQQERDQVMLALKQKQMETSTLQ 1160
Cdd:COG4913 346 EIERLERELEERERRRARLEALlaaLGLPLPASAEEFAALRAEAAALLEALEEeleaLEEALAEAEAALRDLRRELRELE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1161 NEVQRLRDKESRLNQELQRLRDHLLES-----------------------------------------EDSHTREALAAE 1199
Cdd:COG4913 426 AEIASLERRKSNIPARLLALRDALAEAlgldeaelpfvgelievrpeeerwrgaiervlggfaltllvPPEHYAAALRWV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1200 DREaKLRKKVSVLE-------------------EKLVSSSNA------MENASHQASVQVESLQE--------------- 1239
Cdd:COG4913 506 NRL-HLRGRLVYERvrtglpdperprldpdslaGKLDFKPHPfrawleAELGRRFDYVCVDSPEElrrhpraitragqvk 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1240 --------------------------QLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQ------EEKAMY 1287
Cdd:COG4913 585 gngtrhekddrrrirsryvlgfdnraKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswDEIDVA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1288 SAELEkqnhlLAEWKKKAESLE---GKVLSLQERLDEANAALDsasRLTEQLDLKEEQIEELKKQNELHQEMLDDAQKKL 1364
Cdd:COG4913 665 SAERE-----IAELEAELERLDassDDLAALEEQLEELEAELE---ELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
806-1361 |
5.54e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 41.26 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 806 ERDKLKQQVKKMEEWKQQvmttvQNMQHESAQ--LQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNETKLK---NF 880
Cdd:pfam05557 3 ELIESKARLSQLQNEKKQ-----MELEHKRARieLEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALReqaEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 881 GQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHESsQLLQQEVDDLRKSLQEKDATIR 960
Cdd:pfam05557 78 NRLKKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSEL-EELQERLDLLKAKASEAEQLRQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 961 TLQENNHRLSDSVAASSEVERKEHEQADS--EIKQLKEKQEVLQNLLKEKDllikaksdQLHSSNENLANKVNENELLRQ 1038
Cdd:pfam05557 157 NLEKQQSSLAEAEQRIKELEFEIQSQEQDseIVKNSKSELARIPELEKELE--------RLREHNKHLNENIENKLLLKE 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1039 AVTNLKERILILE---MDISKLKGENEKIvdaskgkETEYQALQETNMKFSMMLREKEfechSMREKalaFEQLLKEKEQ 1115
Cdd:pfam05557 229 EVEDLKRKLEREEkyrEEAATLELEKEKL-------EQELQSWVKLAQDTGLNLRSPE----DLSRR---IEQLQQREIV 294
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1116 GKAgELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQRLRdHLLESEDSHTrea 1195
Cdd:pfam05557 295 LKE-ENSSLTSSARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYR-AILESYDKEL--- 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1196 laaedreaklrkkvsvleeklvsssnAMENASHQASVQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMV 1275
Cdd:pfam05557 370 --------------------------TMSNYSPQLLERIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLERE 423
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1276 LEHFQQEEKamySAELEKQNHLLAEWKKKAESLEGKVLSLQERLDE-------------------------ANAALDSAS 1330
Cdd:pfam05557 424 LQALRQQES---LADPSYSKEEVDSLRRKLETLELERQRLREQKNElemelerrclqgdydpkktkvlhlsMNPAAEAYQ 500
|
570 580 590
....*....|....*....|....*....|.
gi 1907085704 1331 RLTEQLDLKEEQIEELKKQNELHQEMLDDAQ 1361
Cdd:pfam05557 501 QRKNQLEKLQAEIERLKRLLKKLEDDLEQVL 531
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
342-586 |
5.77e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 5.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 342 LSSACSPDTSALQLEQERLIQLNQE---KDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLTQLINEKEICIVKLKE 418
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEiaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 419 KSSELQKELDK----------CAQTLRKNETLR-----QTIEEKDRSLGSMKEENNHLQEELERLREQQSRVVpapeprt 483
Cdd:COG4942 91 EIAELRAELEAqkeelaellrALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 484 lDSTTELESELSQLHRIKGHLEEEIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKyqheqmsishtrlflekdEEIKN 563
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQ------------------QEAEE 224
|
250 260
....*....|....*....|...
gi 1907085704 564 LQKTIEQIKAQLHEERQDSQTEN 586
Cdd:COG4942 225 LEALIARLEAEAAAAAERTPAAG 247
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
942-1347 |
6.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.67 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 942 QQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADSEIKQLKEKQEVLQNLLKEKDLLIKAKSDQLHS 1021
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1022 SNENL--ANKVNENELLRQAVTNLKERILILEMDISKLKgENEKIVDASKGKETEYQALQETN-MKFSMMLREKEFECHS 1098
Cdd:PTZ00121 1523 KADEAkkAEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEEDKNMALRKAEeAKKAEEARIEEVMKLY 1601
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1099 MREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRLRDKESRLNQELQ 1178
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1179 RlrdhllesEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVESLqEQLNMVSKQRDETALQLSVS 1258
Cdd:PTZ00121 1682 K--------AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA-EEAKKEAEEDKKKAEEAKKD 1752
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1259 QEQVKQYALSLANLQMVLEHFQQEEKAMYSAELEKQNH-LLAEWKKKAESLEGKVLSLQERLDEANAALDSA-----SRL 1332
Cdd:PTZ00121 1753 EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEkRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSkemedSAI 1832
|
410
....*....|....*
gi 1907085704 1333 TEQLDLKEEQIEELK 1347
Cdd:PTZ00121 1833 KEVADSKNMQLEEAD 1847
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
357-1186 |
6.02e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.57 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 357 QERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSLEEQKQLT---QLINEKEICIVKLKEKSSELQKELDKCAQT 433
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLEssrEIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 434 LRKNETLRQTIE--EKDRSLGSMKEENNHL--QEELERLREQQSRVVPAPEPRTLDSTTELE---SELSQLHRIKGHLEE 506
Cdd:TIGR00606 268 DNEIKALKSRKKqmEKDNSELELKMEKVFQgtDEQLNDLYHNHQRTVREKERELVDCQRELEklnKERRLLNQEKTELLV 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 507 EIKHHQKMIEDQNQSKLQLLQSLQEQKKELDEFKYQHEQMSISHTRLFLE-KDEEIKNLQKTIEQIKAQLHEERQDSQTE 585
Cdd:TIGR00606 348 EQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTlVIERQEDEAKTAAQLCADLQSKERLKQEQ 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 586 NSDIFQETKVQSLSIEHGSEKHDLSKAETERLVKGIKERELEIKLLNEKNTSLTKQIDQLSKDEVGKLTQIIQQKDLEIQ 665
Cdd:TIGR00606 428 ADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQ 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 666 ALHARISSASYSQDvvYLQQQLHAYAMEREKVMVILNEKTRENSQ------------------------LKTEYHKVIDI 721
Cdd:TIGR00606 508 NEKADLDRKLRKLD--QEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfpnkkqLEDWLHSKSKE 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 722 ISAKEAALIKLQDENKKMSTRFESSGQDMFKETIQ------NLSRIIREKDIEIDaLSQKCQTLLTVLQTSGTGSEAGGV 795
Cdd:TIGR00606 586 INQTRDRLAKLNKELASLEQNKNHINNELESKEEQlssyedKLFDVCGSQDEESD-LERLKEEIEKSSKQRAMLAGATAV 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 796 NSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNSKLQVDYTGLIQSYEQNET 875
Cdd:TIGR00606 665 YSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 876 KLKNFGQELAQVQHSIGQLCNTKDLLLGKLDIMSPQLSSGSSLTSQAAEPLRASQSSEPHE---SSQLLQQEVDDLRKSL 952
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVErkiAQQAAKLQGSDLDRTV 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 953 QEKDatiRTLQENNHRLsDSVAASSEVERKEHEQADSEIKQLKEKqevlQNLLKEKDLLIKAKSDQLHSSNENLANKVNE 1032
Cdd:TIGR00606 825 QQVN---QEKQEKQHEL-DTVVSKIELNRKLIQDQQEQIQHLKSK----TNELKSEKLQIGTNLQRRQQFEEQLVELSTE 896
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1033 NELLRQAVTNLKERILILEMDISKLKGENEKIVDAskgKETEYQALQetnMKFSMMLREKEFECHSMREKALAFEQLLKE 1112
Cdd:TIGR00606 897 VQSLIREIKDAKEQDSPLETFLEKDQQEKEELISS---KETSNKKAQ---DKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1907085704 1113 KEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALKQKQMETSTLQNEVQRlRDKESRLNQELQRLRDHLLE 1186
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL-RKRENELKEVEEELKQHLKE 1043
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1097-1284 |
6.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 6.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1097 HSMREKALAFEQLLKEKEQGKAGELN-----QLLNAVKSMQEKTVTFQQERDQvmlaLKQKQMETSTLQNEVQRLRDKES 1171
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNlkelkELEEELKEAEEKEEEYAELQEE----LEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1172 RLNQELQRLRDHL--------LESEDSHTREALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASV----QVESLQE 1239
Cdd:COG4717 120 KLEKLLQLLPLYQelealeaeLAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLateeELQDLAE 199
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1907085704 1240 QLNMVSKQRDETALQLSVSQEQVKQYALSLANLQMVLEHFQQEEK 1284
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
554-879 |
6.57e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.04 E-value: 6.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 554 FLEKDEEIKNLQKTIEQIKAQLHE--ERQDSQTENSDIFQETKVQSLSIEH---GSEKHDLSKAETERLVKGIKERELEI 628
Cdd:PLN02939 65 LQSNTDENGQLENTSLRTVMELPQksTSSDDDHNRASMQRDEAIAAIDNEQqtnSKDGEQLSDFQLEDLVGMIQNAEKNI 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 629 KLLNEKNTSLTKQIDQLSKDEvGKLTQIIQQKDLEIQALHARISSASYSQ-DVVYLQQQL----HAYAMEREKVMVILNE 703
Cdd:PLN02939 145 LLLNQARLQALEDLEKILTEK-EALQGKINILEMRLSETDARIKLAAQEKiHVEILEEQLeklrNELLIRGATEGLCVHS 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 704 KTRENSQLKTEYHKVIDIISAKEAALIKLQDENK------KMSTRFESSGQDMFKETIQNLSRIIREKDIEIDALSQKCQ 777
Cdd:PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEErvfkleKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 778 TLLTVLQTSGTGSEAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQvMTTVQNMQHESAQLQEELhqlqaQVSvDSDNNS 857
Cdd:PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFS-SYKVELLQQKLKLLEERL-----QAS-DHEIHS 376
|
330 340
....*....|....*....|..
gi 1907085704 858 KLQVdYTGLIQSYEQNETKLKN 879
Cdd:PLN02939 377 YIQL-YQESIKEFQDTLSKLKE 397
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
74-294 |
6.72e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 40.97 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 74 NLEAKEQELNQSIHENEILMAELE--ELDKQNQE-----------------ATKHVILIKDQLSKQQSEGDSVIKKLKEE 134
Cdd:PRK04778 253 DIEKEIQDLKEQIDENLALLEELDldEAEEKNEEiqeridqlydilerevkARKYVEKNSDTLPDFLEHAKEQNKELKEE 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 135 L----------AGEKQRTHQLEDDKMNIIKELTVQKEKLTHSEQALSDLQltkqkleDKVEDLVDQLSkseknnfDIQKE 204
Cdd:PRK04778 333 IdrvkqsytlnESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQ-------EELEEILKQLE-------EIEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 205 NHELREHIRQNEEELSTVRSELTQSQTQgsSRNVKDDLLKER-----ETQVQNLKQNLSEVEQLNEHLEQVAFDLRTENE 279
Cdd:PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNK--LHEIKRYLEKSNlpglpEDYLEMFFEVSDEIEALAEELEEKPINMEAVNR 476
|
250
....*....|....*
gi 1907085704 280 ELLEAYEEVrNQLEE 294
Cdd:PRK04778 477 LLEEATEDV-ETLEE 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
714-1095 |
7.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 714 EYHKVIDIISA-------KEAALIKLqDENKKMSTRFESsgqdMFKETIQNLSRIIREKD--IEIDALSQKCQTLltvlq 784
Cdd:TIGR02169 154 ERRKIIDEIAGvaefdrkKEKALEEL-EEVEENIERLDL----IIDEKRQQLERLRREREkaERYQALLKEKREY----- 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 785 tsgtgseAGGVNSNQFEELLQERDKLKQQVKKMEEWKQQVMTTVQNMQHESAQLQEELHQLQAQVSVDSDNNS-KLQVDY 863
Cdd:TIGR02169 224 -------EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQlRVKEKI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 864 TGLIQSYEQNETKLKNFGQELAQVQHSIGQLCNTKDLLLGKLDimspqlSSGSSLTSQAAEplRASQSSEPHEssqlLQQ 943
Cdd:TIGR02169 297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE------ELEREIEEERKR--RDKLTEEYAE----LKE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 944 EVDDLRKSLQEKDATIRTLQEnnhRLSDsvaassevERKEHEQADSEIKQLKEKQEVLQNLLKEKDllikaksdqlhssn 1023
Cdd:TIGR02169 365 ELEDLRAELEEVDKEFAETRD---ELKD--------YREKLEKLKREINELKRELDRLQEELQRLS-------------- 419
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1907085704 1024 ENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQALQETNMKFSMMLREKEFE 1095
Cdd:TIGR02169 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
991-1364 |
7.77e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 7.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 991 IKQLKEKQEVLQNLLKEKDLLiKAKSDQLHSSNENLANKVNENELLRQAVTNLKERILILEMDISKLKGENEKivdasKG 1070
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEY-AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL-----AE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1071 KETEYQALQETNMKFSMMLREKEFECHSMREKALAFEQLLKEKEQGKAGELNQLLNAVKSMQEKTVTFQQERDQVMLALK 1150
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1151 QKQMETSTLQNEVQRLRDKEsRLNQELQRLR------------DHLLESEDSHT-----REALAAEDREAKLRKKVSVLE 1213
Cdd:COG4717 224 ELEEELEQLENELEAAALEE-RLKEARLLLLiaaallallglgGSLLSLILTIAgvlflVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1214 EKLVSSSNAMENASHQAsvQVESLQEQLNMVSKQRDETALQLSVSQEQVKQYALSLANL--QMVLEHFQQEEKAM---YS 1288
Cdd:COG4717 303 EAEELQALPALEELEEE--ELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELeeELQLEELEQEIAALlaeAG 380
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1907085704 1289 AELEKQNHLLAEWKKKAESLEGKVLSLQERLDEANAALDSASRLTEQLDLKEEqIEELKKQNELHQEMLDDAQKKL 1364
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEE-LEELEEELEELEEELEELREEL 455
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
259-497 |
7.83e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 259 EVEQLNEHLEQVAFDLRTENEELLEAYEEVRNQLEESVAGNKQISLEKTAMLEWEKapLETELcRAEKRVLEEERK---Y 335
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQAEIVEALQSALNWLEERKGSLERAKQYQQVIDNFPK--LSAEL-RQQLNNERDEPRsvpP 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 336 EQTVQELSSACSPDTSALqLEQERLIQLNQEKDFEIAELKKSIEQMDTDHKRTKETLSSSL---------EEQKQLTQL- 405
Cdd:PRK10929 101 NMSTDALEQEILQVSSQL-LEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLqtlgtpntpLAQAQLTALq 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 406 ---------INEKEICIV------KLKEKSSELQK----ELDKCAQTLRKN-ETLRQtiEEKDRSLgsmkeennhlqEEL 465
Cdd:PRK10929 180 aesaalkalVDELELAQLsannrqELARLRSELAKkrsqQLDAYLQALRNQlNSQRQ--REAERAL-----------EST 246
|
250 260 270
....*....|....*....|....*....|..
gi 1907085704 466 ERLREQQSRVvpapePRTLDSTTELESELSQL 497
Cdd:PRK10929 247 ELLAEQSGDL-----PKSIVAQFKINRELSQA 273
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
801-1044 |
8.01e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 801 EELLQERDKLKQQVKKMEEWKQQVmttvQNMQHESAQLQEELHQLQAqvsvdsDNNSKLQVDYTGLiqSYEQNETKLKNF 880
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQL----AQAPAKLRQAQAELEALKD------DNDEETRETLSTL--SLRQLESRLAQT 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 881 GQELAQVQHSIGQLcntkdlllgkldimspqlssGSSLTSQAAEPLRAsqSSEPHESSQLLQQ----------EVDDLRK 950
Cdd:PRK11281 134 LDQLQNAQNDLAEY--------------------NSQLVSLQTQPERA--QAALYANSQRLQQirnllkggkvGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 951 SLQEK--------DATI---RTLQENNHRLSDsvaasseVERKEHEQADSEIKQLKEKQEVLQNLLKEKDL-LIKAKSDQ 1018
Cdd:PRK11281 192 SQRVLlqaeqallNAQNdlqRKSLEGNTQLQD-------LLQKQRDYLTARIQRLEHQLQLLQEAINSKRLtLSEKTVQE 264
|
250 260
....*....|....*....|....*..
gi 1907085704 1019 LHSSNEnlANKVNENELL-RQAVTNLK 1044
Cdd:PRK11281 265 AQSQDE--AARIQANPLVaQELEINLQ 289
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
154-410 |
8.29e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 8.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 154 KELTVQKEKLTHSEQALSDLQLTKQKLEDKVeDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELTQS-QTQ 232
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTL-ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEEtRET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 233 GSSRNVKD--DLLKERETQVQNLKQNLSEVEQ----LNEHLEQVAFDLRTENEELleayEEVRNQLEESVAGNKQISLEK 306
Cdd:PRK11281 118 LSTLSLRQleSRLAQTLDQLQNAQNDLAEYNSqlvsLQTQPERAQAALYANSQRL----QQIRNLLKGGKVGGKALRPSQ 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 307 TAMLEWEKAPLEtelcrAEKRVLEEERKYEQTVQELSSACSPDTSALQLEQERLIQLNQE----KDFEIAE--LKKSIEQ 380
Cdd:PRK11281 194 RVLLQAEQALLN-----AQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEainsKRLTLSEktVQEAQSQ 268
|
250 260 270
....*....|....*....|....*....|.
gi 1907085704 381 MDTDHKRTKETLSSSLEEQKQLTQ-LINEKE 410
Cdd:PRK11281 269 DEAARIQANPLVAQELEINLQLSQrLLKATE 299
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
179-470 |
8.95e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.61 E-value: 8.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 179 KLEDKVEDLVDQLSKSEKNNfdIQKENHELREHIRQNEEELSTVRSELTQSQ-TQGSSRNVKDDLLKErETQVQNLKQNL 257
Cdd:PLN03229 433 ELEGEVEKLKEQILKAKESS--SKPSELALNEMIEKLKKEIDLEYTEAVIAMgLQERLENLREEFSKA-NSQDQLMHPVL 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 258 SE-VEQLNEHleqvaFDLRTENEellEAYEEVRNQLEESvagnKQISLEKTAMLEWEKA---------PLETELCRAEKR 327
Cdd:PLN03229 510 MEkIEKLKDE-----FNKRLSRA---PNYLSLKYKLDML----NEFSRAKALSEKKSKAeklkaeinkKFKEVMDRPEIK 577
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 328 VLEEERKYEQTVQELSSACSPDTSAlqleQERLIQLNQEKDFEIAELKKSI---------EQMDTDHKRTKETLSSSLEE 398
Cdd:PLN03229 578 EKMEALKAEVASSGASSGDELDDDL----KEKVEKMKKEIELELAGVLKSMglevigvtkKNKDTAEQTPPPNLQEKIES 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 399 QKQLTQLINEKEICIVKLKEKSSELQKELDKCAQT-----LRKNETLRQTIEEKDRSL---GSMKEENNHLQEELERLRE 470
Cdd:PLN03229 654 LNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTpdvteKEKIEALEQQIKQKIAEAlnsSELKEKFEELEAELAAARE 733
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
167-345 |
9.18e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.71 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 167 EQALSDLQLTKQK---LEDKV--------EDLVDQLSKSeknnfdiQKENHELREHIRQNEEELSTVRSELTQSQTQGSS 235
Cdd:COG3096 944 LQAKEQQRRLKQQifaLSEVVqrrphfsyEDAVGLLGEN-------SDLNEKLRARLEQAEEARREAREQLRQAQAQYSQ 1016
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 236 RN-VKDDLLKERETQVQNLKQNLSEVEQLNEHL----EQVAFDLRTENEELLEAYEEVRNQLEesvagnKQISLektaml 310
Cdd:COG3096 1017 YNqVLASLKSSRDAKQQTLQELEQELEELGVQAdaeaEERARIRRDELHEELSQNRSRRSQLE------KQLTR------ 1084
|
170 180 190
....*....|....*....|....*....|....*
gi 1907085704 311 ewekapLETELCRAEKRVLEEERKYEQTVQELSSA 345
Cdd:COG3096 1085 ------CEAEMDSLQKRLRKAERDYKQEREQVVQA 1113
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
154-288 |
9.55e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 154 KELTVQKEKLTHSEQALSDLQLTKQKLEDKVEDLvdqlsksEKNNFDIQKENHELREHIRQNEEELSTVRSELtqsqtqg 233
Cdd:COG2433 392 EEEPEAEREKEHEERELTEEEEEIRRLEEQVERL-------EAEVEELEAELEEKDERIERLERELSEARSEE------- 457
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1907085704 234 SSRNVKDDLLKERETQVQNLKqnlSEVEQLNEHLEQvafdLRTENEELLEAYEEV 288
Cdd:COG2433 458 RREIRKDREISRLDREIERLE---RELEEERERIEE----LKRKLERLKELWKLE 505
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
927-1355 |
9.56e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 927 RASQSSEPHESSQLLQQEVDDLRKSLQEKDATIRTLQENNHRLSDSVAASSEVERKEHEQADS-EIKQLKEKQEVLQNLL 1005
Cdd:PTZ00121 1358 EAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAdEAKKKAEEKKKADEAK 1437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1006 KEKDLLIKA----KSDQLHSSNENLANKVNE----NELLRQAVTNLKERILILEMDISKLKGENEKIVDASKGKETEYQA 1077
Cdd:PTZ00121 1438 KKAEEAKKAdeakKKAEEAKKAEEAKKKAEEakkaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1078 LQEtnmkfsmmlREKEFECHSMREKALAfEQLLKEKEQGKAGELNQLlNAVKSMQEKTVTFQQERDQVMLALKQKQMETS 1157
Cdd:PTZ00121 1518 AEE---------AKKADEAKKAEEAKKA-DEAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1158 TlQNEVQRLRDKESRLNQELQRLRDHLLESEDSHTR-EALAAEDREAKLRKKVSVLEEKLVSSSNAMENASHQASVQVES 1236
Cdd:PTZ00121 1587 K-KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE 1665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 1237 LQEQlnmvSKQRDETALQLSVSQEQVKQYALSLAnlqmvlehfQQEEKAMYSAELEKQNhllAEWKKKAESLEGKVLSLQ 1316
Cdd:PTZ00121 1666 EAKK----AEEDKKKAEEAKKAEEDEKKAAEALK---------KEAEEAKKAEELKKKE---AEEKKKAEELKKAEEENK 1729
|
410 420 430 440
....*....|....*....|....*....|....*....|..
gi 1907085704 1317 ERLDEANAALDSASRLTEQLDLKEEQ---IEELKKQNELHQE 1355
Cdd:PTZ00121 1730 IKAEEAKKEAEEDKKKAEEAKKDEEEkkkIAHLKKEEEKKAE 1771
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
2-470 |
9.68e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.72 E-value: 9.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 2 RLRSLNQDISLAEDNQKLQ-----MCVQTLEKEKSLLSQEKEELQISLSKLSSEYEVIKstatrDLDLFSQVHDLKHNLE 76
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQqryaeLCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQ-----TKEQIHLQETRKKAVV 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 77 AK---EQELNQSIHENEILMAELEELDKQNQEATKHVILikdQLSKQQSEGDSVIKKLKEELAGEKQRTHQLEDDKMNII 153
Cdd:TIGR00618 493 LArllELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQ---RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 154 KELTVQKEKLTHSEQALSDLQLTKQKL------EDKVEDLVDQLSKSEKNNFDIQKENHELREHIRQNEEELSTVRSELT 227
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLqdltekLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALH 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 228 QSQTQGSSRNVKDDLLKERETQVQNLKQNLSEVEQLNEHLEQVAFDLrteneELLEAYEEVRNQLEESVAGNKQISLEKT 307
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWK-----EMLAQCQTLLRELETHIEEYDREFNEIE 724
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 308 AMLEWEKAPLETELCRAEKRVLEEERKYEQTVQELSSACSPDTSALQLEqerlIQLNQEKDFEIAELKKSIEQMDTDHKR 387
Cdd:TIGR00618 725 NASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAA----LQTGAELSHLAAEIQFFNRLREEDTHL 800
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907085704 388 TKETLSSSLEEQKqltqlinekeicivklkeksSELQKELDKCAQTLRKNETLRQTIEEKDRSLGSMKEENNHLQEELER 467
Cdd:TIGR00618 801 LKTLEAEIGQEIP--------------------SDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQ 860
|
...
gi 1907085704 468 LRE 470
Cdd:TIGR00618 861 LAQ 863
|
|
| |
