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Conserved domains on  [gi|1907082807|ref|XP_036012810|]
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luc7-like protein 3 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LUC7 super family cl44500
LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs ...
 1-58 9.38e-23

LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).


The actual alignment was detected with superfamily member pfam03194:

Pssm-ID: 460842 [Multi-domain]  Cd Length: 246  Bit Score: 94.20  E-value: 9.38e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082807   1 MEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDER 58
Cdd:pfam03194 187 MEVCEVCGAFLIVNDADRRLADHLTGKQHLGYAKIRDTLEELKEKIEERREEREERRE 244
 
Name Accession Description Interval E-value
LUC7 pfam03194
LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs ...
 1-58 9.38e-23

LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).


Pssm-ID: 460842 [Multi-domain]  Cd Length: 246  Bit Score: 94.20  E-value: 9.38e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082807   1 MEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDER 58
Cdd:pfam03194 187 MEVCEVCGAFLIVNDADRRLADHLTGKQHLGYAKIRDTLEELKEKIEERREEREERRE 244
LUC7 COG5200
U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and ...
 1-56 6.82e-07

U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification];


Pssm-ID: 227527 [Multi-domain]  Cd Length: 258  Bit Score: 49.58  E-value: 6.82e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907082807   1 MEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKL---RKRTEEPDRD 56
Cdd:COG5200   185 LQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFgisRVAEIFKEGF 243
 
Name Accession Description Interval E-value
LUC7 pfam03194
LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs ...
 1-58 9.38e-23

LUC7 N_terminus; This family contains the N terminal region of several LUC7 protein homologs and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP).


Pssm-ID: 460842 [Multi-domain]  Cd Length: 246  Bit Score: 94.20  E-value: 9.38e-23
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1907082807   1 MEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKLRKRTEEPDRDER 58
Cdd:pfam03194 187 MEVCEVCGAFLIVNDADRRLADHLTGKQHLGYAKIRDTLEELKEKIEERREEREERRE 244
LUC7 COG5200
U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and ...
 1-56 6.82e-07

U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification];


Pssm-ID: 227527 [Multi-domain]  Cd Length: 258  Bit Score: 49.58  E-value: 6.82e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1907082807   1 MEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELKEKL---RKRTEEPDRD 56
Cdd:COG5200   185 LQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADLLKKFgisRVAEIFKEGF 243
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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