|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02286 |
PLN02286 |
arginine-tRNA ligase |
8-588 |
0e+00 |
|
arginine-tRNA ligase
Pssm-ID: 215160 [Multi-domain] Cd Length: 576 Bit Score: 748.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 8 LQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKAKE-QKVSPREIAENITKHLPNNKYIDKVEIAG 86
Cdd:PLN02286 3 LAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGtSFKNPRAVAQAIVKNLPASEMIESTSVAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 87 PGFINVHLRKDFVSEQLTSLLVNGVQ-LPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 165
Cdd:PLN02286 83 PGFVNVRLSASWLAKRIERMLVDGIDtWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 166 VGDWGTQFGMLIAHLQDKFPDYLTVSP-PIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSR 244
Cdd:PLN02286 163 VGDWGTQFGMLIEHLFEKFPNWESVSDqAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISR 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 245 EEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRL 324
Cdd:PLN02286 243 REFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 325 FEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYD----PKvtlVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKR 400
Cdd:PLN02286 323 NEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPedtyPR---LEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSR 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 401 SMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDE 480
Cdd:PLN02286 400 SKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 481 AMLQRAareTKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGkvlkvnm 560
Cdd:PLN02286 480 DELKKT---GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETS------- 549
|
570 580
....*....|....*....|....*...
gi 1907079499 561 wRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:PLN02286 550 -RLLLCEATAIVMRKCFHLLGITPLYRL 576
|
|
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
3-588 |
0e+00 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 573.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 3 NINSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKV 82
Cdd:COG0018 2 NIKEELAEAIAAALAALGAGLEEPDILVERPKDPEHGDYATNVAMQL-----AKPLKKNPREIAEEIAEALDADPLVEKV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 83 EIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPV--LGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDV 160
Cdd:COG0018 77 EIAGPGFINFFLSPAALAAVLKEILADGEDYGRsdAGKGKKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAGYDV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 161 LRLNHVGDWGTQFGMLIAHLQDKFPDYLTV-SPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLI 239
Cdd:COG0018 157 TRENYINDAGTQIGKLALSLERYGEEEIEPeSKPDGYLGDLYVKFHKEYEEDPELEDIARELLAKLEPGDEEALELWKKA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 240 CDVSREEFKKIYDALDITL-IERGESFYQD--RMKDIVKEFEDKGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDT 314
Cdd:COG0018 237 VDWSLEEIKEDLKRLGVEFdVWFSESSLYDsgAVEEVVEELKEKGLLYESDGALWVRLTefGDDKDRVLVKSDGTYTYFT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 315 SDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWydPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLL 394
Cdd:COG0018 317 TDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGY--DPAKDLEHLLFGMVNLRDGEKMSTRAGTVVTLDDLL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 395 EEGLKRSMDKLKEKerdkvlTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIAR 474
Cdd:COG0018 395 DEAVERAREIIEEK------SEEEKEEIAEQVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNTNPYVQYAHARICSILR 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 475 LANIDEAMLQRAAretKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCycvekdrqtgK 554
Cdd:COG0018 469 KAGEELDGLAEAD---LSLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNAC----------R 535
|
570 580 590
....*....|....*....|....*....|....*....
gi 1907079499 555 VLKVN-----MWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:COG0018 536 ILKAEdeelrAARLALVAATAQVLKNGLGLLGISAPERM 574
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
102-448 |
0e+00 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 557.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 102 QLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQ 181
Cdd:pfam00750 1 TVPNALLQKGLGKASREKKKVVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 182 DKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 261
Cdd:pfam00750 81 KYQDEKTLQEMPIQDLEDFYREAKKHYDEEEEFAERARNYVVKLQSGDEYWRRMWKLIVDITMTQNQRLYDRLDVTLTEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 262 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNG 339
Cdd:pfam00750 161 GESLYNPMMNEIVKDFKKNGLVVEIDGALVVFLDefGKPMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRMLYVIDSR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 340 QAIHFQTIFAAAQMIGwYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEEL 419
Cdd:pfam00750 241 QSQHMQQAFAILRKAG-YVPESKDLEHINFGMVLGKDGKPFKTRKGGTVKLADLLDEALERALQLIMEKNKDKILQADEL 319
|
330 340
....*....|....*....|....*....
gi 1907079499 420 KAAQTSVAYGCIKYADLSHNRLNDYIFSF 448
Cdd:pfam00750 320 EAVADAVGIGAIKYADLSKNRTNDYIFDW 348
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
4-588 |
8.96e-142 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 422.52 E-value: 8.96e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 4 INSRLQEVFGCAIRAAYPDLENPPLIVtPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKVE 83
Cdd:TIGR00456 1 IKTLLKEEISQALLKAGLSKESEILVE-ETPNPEFGDYASNIAFPL-----AKVLKKAPRQIAEEIVLKLKTGEIIEKVE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 84 IAGPgFINVHLRKDFVSEQLTSLLVN-----GVQLPVlgdKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGY 158
Cdd:TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTqkekyGSKKLK---NKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 159 DVLRLNHVGDWGTQFGMLIAHLQDKFPDYLT--VSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAW 236
Cdd:TIGR00456 151 DVIREYYVNDWGRQFGLLALGVEKFGNEALNiaVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEETIKLW 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 237 NLICDVSREEFKKIYDALDITLIER---GESFYQDRMKDIVKEFEDKGFVqVDDGRKIVFVPGCSV--PLTIVKSDGGYT 311
Cdd:TIGR00456 231 KRLVEYSLEGIKETYDRLNIHFDSFvweGESVKNGMLPKVLEDLKEKGLV-VEDGALWLDLTLFGDkkDRVLQKSDGTYL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 312 YDTSDLAAIKQRLfEEKANKIIYVVDNGQAIHFQTIFAAAQMIGwydPKVTLVTHVGFGVVLGedkKKFKTRSGETVRLM 391
Cdd:TIGR00456 310 YLTTDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQMFAILEKLG---YKKKELEHLNFGMVPL---YSMKTRRGNVISLD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 392 DLLEEGLKRSMDKLKEKERdkvltEEELKAAQtSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRS 471
Cdd:TIGR00456 383 NLLDEASKRAGNVITIKND-----LEEEKVAD-AVGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQYAHARICS 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 472 IARLANIDEAMLQraarETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCycvekdrq 551
Cdd:TIGR00456 457 ILRKAEIDGEKLI----ADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKAC-------- 524
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907079499 552 tgKVLK----VNMWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:TIGR00456 525 --PVLDaeneLAAARLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| ArgRS_core |
cd00671 |
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ... |
121-385 |
2.25e-84 |
|
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Pssm-ID: 185675 [Multi-domain] Cd Length: 212 Bit Score: 262.11 E-value: 2.25e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 121 KVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDkfpdyltvsppigdlqaf 200
Cdd:cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 201 ykeskkrfdadeefkkrayqcvvllqsknpdimkaWNLICDVSREEFKKIYDALDITLIE-RGESFYQDRMKDIVKEFED 279
Cdd:cd00671 63 -----------------------------------WRKLVEESIKADLETYGRLDVRFDVwFGESSYLGLMGKVVELLEE 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 280 KGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDTSDLAAIKQRlFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWY 357
Cdd:cd00671 108 LGLLYEEDGALWLDLTefGDDKDRVLVRSDGTYTYFTRDIAYHLDK-FERGADKIIYVVGADHHGHFKRLFAALELLGYD 186
|
250 260
....*....|....*....|....*...
gi 1907079499 358 DPKVtlVTHVGFGVVLGEDKKKFKTRSG 385
Cdd:cd00671 187 EAKK--LEHLLYGMVNLPKEGKMSTRAG 212
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
462-588 |
6.15e-32 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 119.61 E-value: 6.15e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 462 LLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYD 541
Cdd:smart00836 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907079499 542 SCYCVEKDRqtgKVLKVNmwRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:smart00836 81 RVRVLGEEN---PELRKA--RLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PLN02286 |
PLN02286 |
arginine-tRNA ligase |
8-588 |
0e+00 |
|
arginine-tRNA ligase
Pssm-ID: 215160 [Multi-domain] Cd Length: 576 Bit Score: 748.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 8 LQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGISQMLKAKE-QKVSPREIAENITKHLPNNKYIDKVEIAG 86
Cdd:PLN02286 3 LAKLFEASLRLTVPDEPSVEPLVAACTNPKFGDYQCNNAMGLWSKLKGKGtSFKNPRAVAQAIVKNLPASEMIESTSVAG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 87 PGFINVHLRKDFVSEQLTSLLVNGVQ-LPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNH 165
Cdd:PLN02286 83 PGFVNVRLSASWLAKRIERMLVDGIDtWAPTLPVKRAVVDFSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 166 VGDWGTQFGMLIAHLQDKFPDYLTVSP-PIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSR 244
Cdd:PLN02286 163 VGDWGTQFGMLIEHLFEKFPNWESVSDqAIGDLQEFYKAAKKRFDEDEEFKARAQQAVVRLQGGDPEYRAAWAKICEISR 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 245 EEFKKIYDALDITLIERGESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVPGCSVPLTIVKSDGGYTYDTSDLAAIKQRL 324
Cdd:PLN02286 243 REFEKVYQRLRVELEEKGESFYNPYIPGVIEELESKGLVVESDGARVIFVEGFDIPLIVVKSDGGFNYASTDLAALWYRL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 325 FEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYD----PKvtlVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKR 400
Cdd:PLN02286 323 NEEKAEWIIYVTDVGQQQHFDMVFKAAKRAGWLPedtyPR---LEHVGFGLVLGEDGKRFRTRSGEVVRLVDLLDEAKSR 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 401 SMDKLKEKERDKVLTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDE 480
Cdd:PLN02286 400 SKAALIERGKDSEWTPEELEQAAEAVGYGAVKYADLKNNRLTNYTFSFDQMLDLKGNTAVYLLYAHARICSIIRKSGKDI 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 481 AMLQRAareTKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRQTGkvlkvnm 560
Cdd:PLN02286 480 DELKKT---GKIVLDHPDERALGLHLLQFPEVVEEACTDLLPNRLCEYLYNLSEKFTKFYSNCKVNGSEEETS------- 549
|
570 580
....*....|....*....|....*...
gi 1907079499 561 wRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:PLN02286 550 -RLLLCEATAIVMRKCFHLLGITPLYRL 576
|
|
| ArgS |
COG0018 |
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA ... |
3-588 |
0e+00 |
|
Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Arginyl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439789 [Multi-domain] Cd Length: 574 Bit Score: 573.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 3 NINSRLQEVFGCAIRAAYPDLENPPLIVTPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKV 82
Cdd:COG0018 2 NIKEELAEAIAAALAALGAGLEEPDILVERPKDPEHGDYATNVAMQL-----AKPLKKNPREIAEEIAEALDADPLVEKV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 83 EIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPV--LGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDV 160
Cdd:COG0018 77 EIAGPGFINFFLSPAALAAVLKEILADGEDYGRsdAGKGKKVVVEYVSANPTKPLHVGHLRGAVIGDALARILEAAGYDV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 161 LRLNHVGDWGTQFGMLIAHLQDKFPDYLTV-SPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLI 239
Cdd:COG0018 157 TRENYINDAGTQIGKLALSLERYGEEEIEPeSKPDGYLGDLYVKFHKEYEEDPELEDIARELLAKLEPGDEEALELWKKA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 240 CDVSREEFKKIYDALDITL-IERGESFYQD--RMKDIVKEFEDKGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDT 314
Cdd:COG0018 237 VDWSLEEIKEDLKRLGVEFdVWFSESSLYDsgAVEEVVEELKEKGLLYESDGALWVRLTefGDDKDRVLVKSDGTYTYFT 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 315 SDLAAIKQRLFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWydPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLL 394
Cdd:COG0018 317 TDIAYHLYKFERYGFDRVIYVVGADQHGHFKRLFAALKALGY--DPAKDLEHLLFGMVNLRDGEKMSTRAGTVVTLDDLL 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 395 EEGLKRSMDKLKEKerdkvlTEEELKAAQTSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIAR 474
Cdd:COG0018 395 DEAVERAREIIEEK------SEEEKEEIAEQVGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNTNPYVQYAHARICSILR 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 475 LANIDEAMLQRAAretKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCycvekdrqtgK 554
Cdd:COG0018 469 KAGEELDGLAEAD---LSLLTEEEELALIKKLAQFPEVVEEAAEDLEPHRIANYLYELAKAFHSFYNAC----------R 535
|
570 580 590
....*....|....*....|....*....|....*....
gi 1907079499 555 VLKVN-----MWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:COG0018 536 ILKAEdeelrAARLALVAATAQVLKNGLGLLGISAPERM 574
|
|
| tRNA-synt_1d |
pfam00750 |
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be ... |
102-448 |
0e+00 |
|
tRNA synthetases class I (R); Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Pssm-ID: 395607 [Multi-domain] Cd Length: 348 Bit Score: 557.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 102 QLTSLLVNGVQLPVLGDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQ 181
Cdd:pfam00750 1 TVPNALLQKGLGKASREKKKVVVDFSSPNIAKEMHVGHLRSTIIGDALSRLLEFLGHSVIRANHVGDWGTQFGMLIAGLE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 182 DKFPDYLTVSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAWNLICDVSREEFKKIYDALDITLIER 261
Cdd:pfam00750 81 KYQDEKTLQEMPIQDLEDFYREAKKHYDEEEEFAERARNYVVKLQSGDEYWRRMWKLIVDITMTQNQRLYDRLDVTLTEM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 262 GESFYQDRMKDIVKEFEDKGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDTSDLAAIKQRLFEEKANKIIYVVDNG 339
Cdd:pfam00750 161 GESLYNPMMNEIVKDFKKNGLVVEIDGALVVFLDefGKPMGVIVQKSDGGYLYTTTDIAAAKYRYETLHADRMLYVIDSR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 340 QAIHFQTIFAAAQMIGwYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMDLLEEGLKRSMDKLKEKERDKVLTEEEL 419
Cdd:pfam00750 241 QSQHMQQAFAILRKAG-YVPESKDLEHINFGMVLGKDGKPFKTRKGGTVKLADLLDEALERALQLIMEKNKDKILQADEL 319
|
330 340
....*....|....*....|....*....
gi 1907079499 420 KAAQTSVAYGCIKYADLSHNRLNDYIFSF 448
Cdd:pfam00750 320 EAVADAVGIGAIKYADLSKNRTNDYIFDW 348
|
|
| argS |
PRK01611 |
arginyl-tRNA synthetase; Reviewed |
1-588 |
6.18e-166 |
|
arginyl-tRNA synthetase; Reviewed
Pssm-ID: 234964 [Multi-domain] Cd Length: 507 Bit Score: 481.96 E-value: 6.18e-166
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 1 MININSRLQEVFGCAIRAAYPDlENPPLIVTPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHlpnnkyID 80
Cdd:PRK01611 2 MMDIKELLAEALAAALEAGGLP-ELPAVLIERPKDPEHGDYATNVAMQL-----AKKLKKNPREIAEEIVEA------IE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 81 KVEIAGPGFINVHLRKDFVSEQLTSLLVNGVQLPVL--GDKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGY 158
Cdd:PRK01611 70 KVEIAGPGFINFFLDPAALAELVLAILEAGERYGRSdiGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGY 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 159 DVLRLNHVGDWGTQFGMLIAHLQdkfpdyltvsppigdlqafykeskkrfdadeefkkrayqcvvllqsknpdimKAWNL 238
Cdd:PRK01611 150 DVTREYYVNDAGTQIGMLIASLE----------------------------------------------------LLWRK 177
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 239 ICDVSREEFKKIYDALDITLIE---RGESFYQDRMKDIVKEFEDKG-FVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTY 312
Cdd:PRK01611 178 AVDISLDEIKEDLDRLGVHFDVwfsESELYYNGKVDEVVEDLKEKGlLYVESDGALWVRLTefGDDKDRVLIKSDGTYTY 257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 313 DTSDLAAIKQRLfeEKANKIIYVVDNGQAIHFQTIFAAAQMIGWYDPKVTLVTHVGFGVVLGEDKKKFKTRSGETVRLMD 392
Cdd:PRK01611 258 FTRDIAYHLYKF--ERFDRVIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRAGNVVTLDD 335
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 393 LLEEGLKRSMDKLKEKERDKVlteeelkaaqtsVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSI 472
Cdd:PRK01611 336 LLDEAVGRARELIEEKEIAEA------------VGIDAVRYFDLSRSRDKDLDFDLDLALSFEGNNPPYVQYAHARICSI 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 473 ARLANideamlQRAARETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCYCVEKDRqt 552
Cdd:PRK01611 404 LRKAA------EAGIDLLLALLTEEEEKELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSFYNRVLLKDEEE-- 475
|
570 580 590
....*....|....*....|....*....|....*.
gi 1907079499 553 gkvlKVNMWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:PRK01611 476 ----ELRNARLALVKATAQVLKNGLDLLGISAPERM 507
|
|
| argS |
TIGR00456 |
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed ... |
4-588 |
8.96e-142 |
|
arginyl-tRNA synthetase; This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273085 [Multi-domain] Cd Length: 563 Bit Score: 422.52 E-value: 8.96e-142
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 4 INSRLQEVFGCAIRAAYPDLENPPLIVtPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKVE 83
Cdd:TIGR00456 1 IKTLLKEEISQALLKAGLSKESEILVE-ETPNPEFGDYASNIAFPL-----AKVLKKAPRQIAEEIVLKLKTGEIIEKVE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 84 IAGPgFINVHLRKDFVSEQLTSLLVN-----GVQLPVlgdKEKVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGY 158
Cdd:TIGR00456 75 AAGP-FINFFLSPQKLLERLIQKILTqkekyGSKKLK---NKKIIIEFSSANPAGPLHVGHLRNAIIGDSLARILEFLGY 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 159 DVLRLNHVGDWGTQFGMLIAHLQDKFPDYLT--VSPPIGDLQAFYKESKKRFDADEEFKKRAYQCVVLLQSKNPDIMKAW 236
Cdd:TIGR00456 151 DVIREYYVNDWGRQFGLLALGVEKFGNEALNiaVKKPDHGLEGFYVEINKRLEENEELEEEARELFVKLESGDEETIKLW 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 237 NLICDVSREEFKKIYDALDITLIER---GESFYQDRMKDIVKEFEDKGFVqVDDGRKIVFVPGCSV--PLTIVKSDGGYT 311
Cdd:TIGR00456 231 KRLVEYSLEGIKETYDRLNIHFDSFvweGESVKNGMLPKVLEDLKEKGLV-VEDGALWLDLTLFGDkkDRVLQKSDGTYL 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 312 YDTSDLAAIKQRLfEEKANKIIYVVDNGQAIHFQTIFAAAQMIGwydPKVTLVTHVGFGVVLGedkKKFKTRSGETVRLM 391
Cdd:TIGR00456 310 YLTTDIAYHLDKL-ERGFDKMIYVWGSDHHLHIAQMFAILEKLG---YKKKELEHLNFGMVPL---YSMKTRRGNVISLD 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 392 DLLEEGLKRSMDKLKEKERdkvltEEELKAAQtSVAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRS 471
Cdd:TIGR00456 383 NLLDEASKRAGNVITIKND-----LEEEKVAD-AVGIGAVRYFDLSKNRTTDYVFDWDAMLSFEGNTAPYIQYAHARICS 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 472 IARLANIDEAMLQraarETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCycvekdrq 551
Cdd:TIGR00456 457 ILRKAEIDGEKLI----ADDFELLEEKEKELLKLLLQFPEVLEEAAEELEPHVLTNYLYELASLFSSFYKAC-------- 524
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 1907079499 552 tgKVLK----VNMWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:TIGR00456 525 --PVLDaeneLAAARLALLKATRQTLKNGLDLLGIEPPERM 563
|
|
| ArgRS_core |
cd00671 |
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic ... |
121-385 |
2.25e-84 |
|
catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Pssm-ID: 185675 [Multi-domain] Cd Length: 212 Bit Score: 262.11 E-value: 2.25e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 121 KVIVDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFGMLIAHLQDkfpdyltvsppigdlqaf 200
Cdd:cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEK------------------ 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 201 ykeskkrfdadeefkkrayqcvvllqsknpdimkaWNLICDVSREEFKKIYDALDITLIE-RGESFYQDRMKDIVKEFED 279
Cdd:cd00671 63 -----------------------------------WRKLVEESIKADLETYGRLDVRFDVwFGESSYLGLMGKVVELLEE 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 280 KGFVQVDDGRKIVFVP--GCSVPLTIVKSDGGYTYDTSDLAAIKQRlFEEKANKIIYVVDNGQAIHFQTIFAAAQMIGWY 357
Cdd:cd00671 108 LGLLYEEDGALWLDLTefGDDKDRVLVRSDGTYTYFTRDIAYHLDK-FERGADKIIYVVGADHHGHFKRLFAALELLGYD 186
|
250 260
....*....|....*....|....*...
gi 1907079499 358 DPKVtlVTHVGFGVVLGEDKKKFKTRSG 385
Cdd:cd00671 187 EAKK--LEHLLYGMVNLPKEGKMSTRAG 212
|
|
| Anticodon_Ia_Arg |
cd07956 |
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA ... |
426-588 |
3.13e-36 |
|
Anticodon-binding domain of arginyl tRNA synthetases; This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Pssm-ID: 153410 [Multi-domain] Cd Length: 156 Bit Score: 132.72 E-value: 3.13e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 426 VAYGCIKYADLSHNRLNDYIFSFDKMLDDRGNTAAYLLYAFTRIRSIARLANIDEAMLQRAARETkiiLDHEKEWKLGRC 505
Cdd:cd07956 3 VGVGAVKYQDLSNKRIKDYTFDWERMLSFEGDTGPYLQYAHARLCSILRKAGETIEAEADADLSL---LPEPDERDLILL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 506 ILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYDSCycvekdrqtgKVLK----VNMWRMLLCEAVAAVMAKGFDILG 581
Cdd:cd07956 80 LAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC----------PVLGaeeeLRNARLALVAAARQVLANGLDLLG 149
|
....*..
gi 1907079499 582 IKPVQRM 588
Cdd:cd07956 150 IEAPERM 156
|
|
| DALR_1 |
pfam05746 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
462-588 |
2.05e-34 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteriztic conserved amino acids.
Pssm-ID: 399042 [Multi-domain] Cd Length: 117 Bit Score: 126.23 E-value: 2.05e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 462 LLYAFTRIRSIARLANIDEAmlqrAARETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYD 541
Cdd:pfam05746 1 LQYAHARICSILRKAGELGI----NLDIDADLLTEEEEKELLKALLQFPEVLEEAAEELEPHRLANYLYELASAFHSFYN 76
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907079499 542 SCYCVEKDRqtgkvlKVNMWRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:pfam05746 77 NCRVLDEDN------EERNARLALLKAVRQVLKNGLDLLGIEAPEKM 117
|
|
| DALR_1 |
smart00836 |
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain ... |
462-588 |
6.15e-32 |
|
DALR anticodon binding domain; This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Pssm-ID: 214846 [Multi-domain] Cd Length: 122 Bit Score: 119.61 E-value: 6.15e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 462 LLYAFTRIRSIARLANIDEAMLQRAARETKIILDHEKEWKLGRCILRFPEILQKILDDLFLHTLCDYIYELATTFTEFYD 541
Cdd:smart00836 1 VQYAHARICSILRKAGEAGETLPDIADADLSLLTEPEEWALLLKLARFPEVLEAAAEQLEPHRLANYLYDLAAAFHSFYN 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1907079499 542 SCYCVEKDRqtgKVLKVNmwRMLLCEAVAAVMAKGFDILGIKPVQRM 588
Cdd:smart00836 81 RVRVLGEEN---PELRKA--RLALLKAVRQVLANGLRLLGISAPERM 122
|
|
| Arg_tRNA_synt_N |
smart01016 |
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl ... |
7-94 |
6.05e-25 |
|
Arginyl tRNA synthetase N terminal dom; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 214975 [Multi-domain] Cd Length: 85 Bit Score: 98.43 E-value: 6.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 7 RLQEVFGCAIRAAYPDLENPPLI-VTPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKVEIA 85
Cdd:smart01016 2 LLKEAIAEALKKALGVEGEPIDIaLERPKDPDHGDYATNVAFRL-----AKKLKKNPRELAEEIAEKLPKSDLVEKVEIA 76
|
....*....
gi 1907079499 86 GPGFINVHL 94
Cdd:smart01016 77 GPGFINFFL 85
|
|
| Arg_tRNA_synt_N |
pfam03485 |
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of ... |
8-94 |
2.10e-24 |
|
Arginyl tRNA synthetase N terminal domain; This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Pssm-ID: 460943 [Multi-domain] Cd Length: 83 Bit Score: 96.92 E-value: 2.10e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907079499 8 LQEVFGCAIRAAY-PDLENPPLIVTPSQQPKFGDYQCNSAMGIsqmlkAKEQKVSPREIAENITKHLPNNKYIDKVEIAG 86
Cdd:pfam03485 1 LKKAIAKALSKLGgPDLELIDIVIETPKNPKFGDYATNVAMQL-----AKKLKKNPREIAEEIAEKLEKSDIIEKVEVAG 75
|
....*...
gi 1907079499 87 PGFINVHL 94
Cdd:pfam03485 76 PGFINFFL 83
|
|
| class_I_aaRS_core |
cd00802 |
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA ... |
124-174 |
1.38e-07 |
|
catalytic core domain of class I amino acyl-tRNA synthetase; Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Pssm-ID: 173901 [Multi-domain] Cd Length: 143 Bit Score: 50.94 E-value: 1.38e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1907079499 124 VDFSSPNIAKEMHVGHLRSTIIGESMSRLFEFAGYDVLRLNHVGDWGTQFG 174
Cdd:cd00802 1 TTFSGITPNGYLHIGHLRTIVTFDFLAQAYRKLGYKVRCIALIDDAGGLIG 51
|
|
| |
