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Conserved domains on  [gi|1907178326|ref|XP_036008682|]
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urokinase plasminogen activator surface receptor isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TFP_LU_ECD_uPAR_rpt2 cd23557
second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 113-198 1.08e-29

second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the second ECD.


:

Pssm-ID: 467087  Cd Length: 85  Bit Score: 107.41  E-value: 1.08e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326 113 QGRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTErSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCC 192
Cdd:cd23557     1 RSRYLECYSCGSSDMSCERGRLTSLQCRGPQDQCVDVTTHGSLE-RPKSERRLKGCGTLPGCPGSLGFHNNDTFHLLKCC 79


                  ....*.
gi 1907178326 193 NYTHCN 198
Cdd:cd23557    80 NSSLCN 85
TFP_LU_ECD_uPAR_rpt1 cd23556
first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 24-101 1.95e-28

first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the first ECD.


:

Pssm-ID: 467086  Cd Length: 79  Bit Score: 104.08  E-value: 1.95e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907178326  24 LQCMQCESNQSCLVEE-CALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNR 101
Cdd:cd23556     1 LRCYSCKSNGDCRVEEvCALGQDLCRTTVMTLWEEGEELELVVKGCDVSGKTNASSSYRTGLNINSLQETVCSSDLCNQ 79
TFP super family cl45932
three-fingered protein (TFP) fold found in Ly6/uPAR (LU) and snake toxin superfamily; The LU ...
 205-248 1.35e-09

three-fingered protein (TFP) fold found in Ly6/uPAR (LU) and snake toxin superfamily; The LU (also known as Ly-6 antigen/uPA receptor)-like extracellular domain (ECD) occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. It is a structural domain involved in protein-protein interactions, tolerating an unusual degree of variation and binding with high specificity to a broad spectrum of targets. The snake toxin domain is present in short and long neurotoxins, cytotoxins, and short toxins, and in other miscellaneous venom peptides. The toxin acts by binding to the nicotinic acetylcholine receptors in the postsynaptic membrane of skeletal muscles and preventing the binding of acetylcholine, thereby blocking the excitation of muscles. Both the LU-like ECD and the snake toxin domain belong to three-fingered protein (TFP) fold, which is characterized by containing 70 to 100 amino acids including eight to ten cysteine residues spaced at conserved distances.


The actual alignment was detected with superfamily member cd23558:

Pssm-ID: 480272  Cd Length: 93  Bit Score: 53.94  E-value: 1.35e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907178326 205 NRSYTVRGCATASWCQGSHVADSFpTHLNVSVSCCHGSGCNSPT 248
Cdd:cd23558    51 NQSYMVKGCATPSMCQSTALSLNQ-VLNSADVRCCNGSLCNNGD 93
 
Name Accession Description Interval E-value
TFP_LU_ECD_uPAR_rpt2 cd23557
second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 113-198 1.08e-29

second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the second ECD.


Pssm-ID: 467087  Cd Length: 85  Bit Score: 107.41  E-value: 1.08e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326 113 QGRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTErSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCC 192
Cdd:cd23557     1 RSRYLECYSCGSSDMSCERGRLTSLQCRGPQDQCVDVTTHGSLE-RPKSERRLKGCGTLPGCPGSLGFHNNDTFHLLKCC 79


                  ....*.
gi 1907178326 193 NYTHCN 198
Cdd:cd23557    80 NSSLCN 85
TFP_LU_ECD_uPAR_rpt1 cd23556
first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 24-101 1.95e-28

first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the first ECD.


Pssm-ID: 467086  Cd Length: 79  Bit Score: 104.08  E-value: 1.95e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907178326  24 LQCMQCESNQSCLVEE-CALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNR 101
Cdd:cd23556     1 LRCYSCKSNGDCRVEEvCALGQDLCRTTVMTLWEEGEELELVVKGCDVSGKTNASSSYRTGLNINSLQETVCSSDLCNQ 79
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 24-106 9.56e-16

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 70.64  E-value: 9.56e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326   24 LQCMQCESN--QSCLVEE-CALGQDLCRTTVLREWQDDRElEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCN 100
Cdd:smart00134   1 LQCYSCTGNpdSSCSSEEeCRSPDDVCLTVVAEVISDSRG-SVVYKGCATSPICPGSHGYEINLTIAFLKVSCCQTDLCN 79


                   ....*.
gi 1907178326  101 RPRPGA 106
Cdd:smart00134  80 AAGPGA 85
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 117-198 1.44e-15

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 70.26  E-value: 1.44e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326  117 LECASCT-SLDQSCERGREqslqCRYPTEHCIEVVTLQSTERSlkDEDYTRGCGSLPGCPGTAGFHSNQTFHFLK--CCN 193
Cdd:smart00134   1 LQCYSCTgNPDSSCSSEEE----CRSPDDVCLTVVAEVISDSR--GSVVYKGCATSPICPGSHGYEINLTIAFLKvsCCQ 74


                   ....*
gi 1907178326  194 YTHCN 198
Cdd:smart00134  75 TDLCN 79
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
 26-100 3.14e-15

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 69.11  E-value: 3.14e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907178326  26 CMQCE--SNQSCLVE-ECALGQDLCRTTVLREWQDDRELEVVTRGCAHSeKTNRTMSYRMGSMIISLTETVCATNLCN 100
Cdd:pfam00021   1 CYSCLgvSNEDCLSEvTCPLSDGQCVTTTLELPEGNLRGTVVSKGCARS-SCPRLLSDFINGGIISVSESCCQSDLCN 77
TFP_LU_ECD_uPAR_rpt3 cd23558
third extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 205-248 1.35e-09

third extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the third ECD.


Pssm-ID: 467088  Cd Length: 93  Bit Score: 53.94  E-value: 1.35e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907178326 205 NRSYTVRGCATASWCQGSHVADSFpTHLNVSVSCCHGSGCNSPT 248
Cdd:cd23558    51 NQSYMVKGCATPSMCQSTALSLNQ-VLNSADVRCCNGSLCNNGD 93
 
Name Accession Description Interval E-value
TFP_LU_ECD_uPAR_rpt2 cd23557
second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 113-198 1.08e-29

second extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the second ECD.


Pssm-ID: 467087  Cd Length: 85  Bit Score: 107.41  E-value: 1.08e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326 113 QGRYLECASCTSLDQSCERGREQSLQCRYPTEHCIEVVTLQSTErSLKDEDYTRGCGSLPGCPGTAGFHSNQTFHFLKCC 192
Cdd:cd23557     1 RSRYLECYSCGSSDMSCERGRLTSLQCRGPQDQCVDVTTHGSLE-RPKSERRLKGCGTLPGCPGSLGFHNNDTFHLLKCC 79


                  ....*.
gi 1907178326 193 NYTHCN 198
Cdd:cd23557    80 NSSLCN 85
TFP_LU_ECD_uPAR_rpt1 cd23556
first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 24-101 1.95e-28

first extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the first ECD.


Pssm-ID: 467086  Cd Length: 79  Bit Score: 104.08  E-value: 1.95e-28
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1907178326  24 LQCMQCESNQSCLVEE-CALGQDLCRTTVLREWQDDRELEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCNR 101
Cdd:cd23556     1 LRCYSCKSNGDCRVEEvCALGQDLCRTTVMTLWEEGEELELVVKGCDVSGKTNASSSYRTGLNINSLQETVCSSDLCNQ 79
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 24-106 9.56e-16

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 70.64  E-value: 9.56e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326   24 LQCMQCESN--QSCLVEE-CALGQDLCRTTVLREWQDDRElEVVTRGCAHSEKTNRTMSYRMGSMIISLTETVCATNLCN 100
Cdd:smart00134   1 LQCYSCTGNpdSSCSSEEeCRSPDDVCLTVVAEVISDSRG-SVVYKGCATSPICPGSHGYEINLTIAFLKVSCCQTDLCN 79


                   ....*.
gi 1907178326  101 RPRPGA 106
Cdd:smart00134  80 AAGPGA 85
LU smart00134
Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type ...
 117-198 1.44e-15

Ly-6 antigen / uPA receptor -like domain; Three-fold repeated domain in urokinase-type plasminogen activator receptor; occurs singly in other GPI-linked cell-surface glycoproteins (Ly-6 family, CD59, thymocyte B cell antigen, Sgp-2). Topology of these domains is similar to that of snake venom neurotoxins.


Pssm-ID: 214530  Cd Length: 85  Bit Score: 70.26  E-value: 1.44e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1907178326  117 LECASCT-SLDQSCERGREqslqCRYPTEHCIEVVTLQSTERSlkDEDYTRGCGSLPGCPGTAGFHSNQTFHFLK--CCN 193
Cdd:smart00134   1 LQCYSCTgNPDSSCSSEEE----CRSPDDVCLTVVAEVISDSR--GSVVYKGCATSPICPGSHGYEINLTIAFLKvsCCQ 74


                   ....*
gi 1907178326  194 YTHCN 198
Cdd:smart00134  75 TDLCN 79
UPAR_LY6 pfam00021
u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.
 26-100 3.14e-15

u-PAR/Ly-6 domain; This extracellular disulphide bond rich domain is related to pfam00087.


Pssm-ID: 394978  Cd Length: 77  Bit Score: 69.11  E-value: 3.14e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1907178326  26 CMQCE--SNQSCLVE-ECALGQDLCRTTVLREWQDDRELEVVTRGCAHSeKTNRTMSYRMGSMIISLTETVCATNLCN 100
Cdd:pfam00021   1 CYSCLgvSNEDCLSEvTCPLSDGQCVTTTLELPEGNLRGTVVSKGCARS-SCPRLLSDFINGGIISVSESCCQSDLCN 77
TFP_LU_ECD_uPAR_rpt3 cd23558
third extracellular domain (ECD) found in urokinase plasminogen activator surface receptor ...
 205-248 1.35e-09

third extracellular domain (ECD) found in urokinase plasminogen activator surface receptor (uPAR) and similar proteins; uPAR (also called U-PAR, or monocyte activation antigen Mo3, or CD87) acts as a receptor for urokinase plasminogen activator. It plays a role in localizing and promoting plasmin formation. It mediates the proteolysis-independent signal transduction activation effects of U-PA. It is subject to negative-feedback regulation by U-PA which cleaves it into an inactive form. uPAR contains three extracellular domains (ECDs) that belong to Ly-6 antigen/uPA receptor-like (LU) superfamily and exhibits a snake toxin-like fold (also known as three-finger toxin/3FTx fold or three-fingered protein/TFP domain fold). This model corresponds to the third ECD.


Pssm-ID: 467088  Cd Length: 93  Bit Score: 53.94  E-value: 1.35e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1907178326 205 NRSYTVRGCATASWCQGSHVADSFpTHLNVSVSCCHGSGCNSPT 248
Cdd:cd23558    51 NQSYMVKGCATPSMCQSTALSLNQ-VLNSADVRCCNGSLCNNGD 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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