NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1846695631|ref|XP_034640244|]
View 

ankyrin repeat and SOCS box protein 7 [Trachemys scripta elegans]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
16-251 1.78e-34

Ankyrin repeat [Signal transduction mechanisms];


:

Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 127.38  E-value: 1.78e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  16 LQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLiGGFTALHYAAMHGRAR 95
Cdd:COG0666    23 LLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDD-GGNTLLHAAARNGDLE 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  96 IARLMLEseyRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNAN 175
Cdd:COG0666   102 IVKLLLE---AGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGAD 178

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 176 IDIQNGF---LLRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPL 251
Cdd:COG0666   179 VNARDNDgetPLHLAAENGHLEIVKLLLEAGADVNA-KDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTAL 256
SOCS_ASB7 cd03726
SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a ...
 273-317 2.77e-24

SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


:

Pssm-ID: 239696  Cd Length: 45  Bit Score: 92.99  E-value: 2.77e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHKFDD 317
Cdd:cd03726     1 RQPRTLQDLCRIKIRHCIGLQNLKLLDELPIAKVMKDYLKHKFDD 45
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
16-251 1.78e-34

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 127.38  E-value: 1.78e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  16 LQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLiGGFTALHYAAMHGRAR 95
Cdd:COG0666    23 LLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDD-GGNTLLHAAARNGDLE 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  96 IARLMLEseyRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNAN 175
Cdd:COG0666   102 IVKLLLE---AGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGAD 178

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 176 IDIQNGF---LLRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPL 251
Cdd:COG0666   179 VNARDNDgetPLHLAAENGHLEIVKLLLEAGADVNA-KDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTAL 256
SOCS_ASB7 cd03726
SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a ...
 273-317 2.77e-24

SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239696  Cd Length: 45  Bit Score: 92.99  E-value: 2.77e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHKFDD 317
Cdd:cd03726     1 RQPRTLQDLCRIKIRHCIGLQNLKLLDELPIAKVMKDYLKHKFDD 45
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 21-241 2.58e-22

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 96.21  E-value: 2.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKdLIGGFTALHYAAMHGRARIARLM 100
Cdd:PHA02875    9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-YPDIESELHDAVEEGDVKAVEEL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 101 LES-EYRSDIInakSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQ 179
Cdd:PHA02875   88 LDLgKFADDVF---YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1846695631 180 NGF---LLRYAVIKSNHSYCRMFLQRGADTN-LGRleDGQTPLHLSALRDDVL-CAQMLYNYGADTN 241
Cdd:PHA02875  165 DCCgctPLIIAMAKGDIAICKMLLDSGANIDyFGK--NGCVAALCYAIENNKIdIVRLFIKRGADCN 229
Ank_2 pfam12796
Ankyrin repeats (3 copies);
85-180 9.63e-20

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 82.09  E-value: 9.63e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  85 LHYAAMHGRARIARLMLESEYRsdiINAKSNDGWTPLHVAAHYGRDSFVRLLLEfKAEVDpLSDKGTTPLQLAIIRERSS 164
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGAD---ANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVN-LKDNGRTALHYAARSGHLE 75

                          90
                  ....*....|....*.
gi 1846695631 165 CVKILLDHNANIDIQN 180
Cdd:pfam12796  76 IVKLLLEKGADINVKD 91
SOCS_box pfam07525
SOCS box; The SOCS box acts as a bridge between specific substrate- binding domains and more ...
 274-312 4.79e-09

SOCS box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases.


Pssm-ID: 462192  Cd Length: 39  Bit Score: 51.40  E-value: 4.79e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLK 312
Cdd:pfam07525   1 TPRSLQHLCRLAIRRALGKRRLGAIDKLPLPPLLKDYLL 39
SOCS smart00253
suppressors of cytokine signalling; suppressors of cytokine signalling
 273-314 4.59e-06

suppressors of cytokine signalling; suppressors of cytokine signalling


Pssm-ID: 128549  Cd Length: 43  Bit Score: 43.05  E-value: 4.59e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1846695631  273 RQPRNLQDLCRIKIRQCIGLQNLKlldELPIAKVIKDYLKHK 314
Cdd:smart00253   5 SNVPSLQHLCRFTIRRCTRTDQIK---TLPLPPKLKDYLSYY 43
TRPV5-6 cd22192
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ...
 81-222 5.08e-06

Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.


Pssm-ID: 411976 [Multi-domain]  Cd Length: 609  Bit Score: 48.09  E-value: 5.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  81 GFTALHYAAMHGRARIARLMLEsEYRSDIINAKSND---GWTPLHVAAHYGRDSFVRLLLEFKAEV-------------- 143
Cdd:cd22192    51 GETALHVAALYDNLEAAVVLME-AAPELVNEPMTSDlyqGETALHIAVVNQNLNLVRELIARGADVvspratgtffrpgp 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 144 DPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGF---LLRYAVIKSNHSY-CRMF---LQRGADTNLGRLE---- 212
Cdd:cd22192   130 KNLIYYGEHPLSFAACVGNEEIVRLLIEHGADIRAQDSLgntVLHILVLQPNKTFaCQMYdliLSYDKEDDLQPLDlvpn 209

                         170
                  ....*....|.
gi 1846695631 213 -DGQTPLHLSA 222
Cdd:cd22192   210 nQGLTPFKLAA 220
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 116-144 4.36e-04

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 37.18  E-value: 4.36e-04
                           10        20
                   ....*....|....*....|....*....
gi 1846695631  116 DGWTPLHVAAHYGRDSFVRLLLEFKAEVD 144
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
trp TIGR00870
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ ...
 16-107 4.89e-04

transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999). [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273311 [Multi-domain]  Cd Length: 743  Bit Score: 41.61  E-value: 4.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  16 LQIQAAVAAGDVhtVRKMLEQGYSPNGRDANGWTLLH-------FSAARGKERC-----VRVFLEHGADPTVKDLI---G 80
Cdd:TIGR00870 179 LNAAACLGSPSI--VALLSEDPADILTADSLGNTLLHllvmeneFKAEYEELSCqmynfALSLLDKLRDSKELEVIlnhQ 256

                          90       100
                  ....*....|....*....|....*..
gi 1846695631  81 GFTALHYAAMHGRARIARLMLESEYRS 107
Cdd:TIGR00870 257 GLTPLKLAAKEGRIVLFRLKLAIKYKQ 283
 
Name Accession Description Interval E-value
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
16-251 1.78e-34

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 127.38  E-value: 1.78e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  16 LQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLiGGFTALHYAAMHGRAR 95
Cdd:COG0666    23 LLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDD-GGNTLLHAAARNGDLE 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  96 IARLMLEseyRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNAN 175
Cdd:COG0666   102 IVKLLLE---AGADVNARDKDGETPLHLAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGAD 178

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 176 IDIQNGF---LLRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPL 251
Cdd:COG0666   179 VNARDNDgetPLHLAAENGHLEIVKLLLEAGADVNA-KDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTAL 256
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
20-180 1.37e-28

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 111.58  E-value: 1.37e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  20 AAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDlIGGFTALHYAAMHGRARIARL 99
Cdd:COG0666   126 LAAYNGNLEIVKLLLEAGADVNAQDNDGNTPLHLAAANGNLEIVKLLLEAGADVNARD-NDGETPLHLAAENGHLEIVKL 204

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 100 MLEseyRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQ 179
Cdd:COG0666   205 LLE---AGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGLTALLLAAAAGAALIVKLLLLALLLLAAA 281


                  .
gi 1846695631 180 N 180
Cdd:COG0666   282 L 282
SOCS_ASB7 cd03726
SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a ...
 273-317 2.77e-24

SOCS (suppressors of cytokine signaling) box of ASB7-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239696  Cd Length: 45  Bit Score: 92.99  E-value: 2.77e-24
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHKFDD 317
Cdd:cd03726     1 RQPRTLQDLCRIKIRHCIGLQNLKLLDELPIAKVMKDYLKHKFDD 45
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 21-241 2.58e-22

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 96.21  E-value: 2.58e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKdLIGGFTALHYAAMHGRARIARLM 100
Cdd:PHA02875    9 AILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK-YPDIESELHDAVEEGDVKAVEEL 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 101 LES-EYRSDIInakSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQ 179
Cdd:PHA02875   88 LDLgKFADDVF---YKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIE 164

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1846695631 180 NGF---LLRYAVIKSNHSYCRMFLQRGADTN-LGRleDGQTPLHLSALRDDVL-CAQMLYNYGADTN 241
Cdd:PHA02875  165 DCCgctPLIIAMAKGDIAICKMLLDSGANIDyFGK--NGCVAALCYAIENNKIdIVRLFIKRGADCN 229
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
76-251 7.03e-21

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 90.40  E-value: 7.03e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  76 KDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQ 155
Cdd:COG0666    13 AALLLLLLLALLLLAAALLLLLLLLLLLLLALLALALADALGALLLLAAALAGDLLVALLLLAAGADINAKDDGGNTLLH 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 156 LAIIRERSSCVKILLDHNANIDIQNGF---LLRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQM 232
Cdd:COG0666    93 AAARNGDLEIVKLLLEAGADVNARDKDgetPLHLAAYNGNLEIVKLLLEAGADVNA-QDNDGNTPLHLAAANGNLEIVKL 171

                         170
                  ....*....|....*....
gi 1846695631 233 LYNYGADTNTRNYEGQTPL 251
Cdd:COG0666   172 LLEAGADVNARDNDGETPL 190
PHA02878 PHA02878
ankyrin repeat protein; Provisional
 63-255 4.45e-20

ankyrin repeat protein; Provisional


Pssm-ID: 222939 [Multi-domain]  Cd Length: 477  Bit Score: 90.32  E-value: 4.45e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  63 VRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLESEYRSDIINAKSNdgwTPLHVAAHYGRDSFVRLLLEFKAE 142
Cdd:PHA02878  150 TKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SPLHHAVKHYNKPIVHILLENGAS 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 143 VDPLSDKGTTPLQLAIirersscvkilldhnanidiqnGFLLRYAVIKsnhsycrMFLQRGADTNLGRLEDGQTPLHLSA 222
Cdd:PHA02878  227 TDARDKCGNTPLHISV----------------------GYCKDYDILK-------LLLEHGVDVNAKSYILGLTALHSSI 277

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1846695631 223 LRDDVLcaQMLYNYGADTNTRNYEGQTPLAVSI 255
Cdd:PHA02878  278 KSERKL--KLLLEYGADINSLNSYKLTPLSSAV 308
Ank_2 pfam12796
Ankyrin repeats (3 copies);
85-180 9.63e-20

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 82.09  E-value: 9.63e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  85 LHYAAMHGRARIARLMLESEYRsdiINAKSNDGWTPLHVAAHYGRDSFVRLLLEfKAEVDpLSDKGTTPLQLAIIRERSS 164
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGAD---ANLQDKNGRTALHLAAKNGHLEIVKLLLE-HADVN-LKDNGRTALHYAARSGHLE 75

                          90
                  ....*....|....*.
gi 1846695631 165 CVKILLDHNANIDIQN 180
Cdd:pfam12796  76 IVKLLLEKGADINVKD 91
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 29-255 4.88e-18

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 84.24  E-value: 4.88e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  29 TVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDlIGGFTALHYAAMHGRARIARLMLEseyRSD 108
Cdd:PHA02874  106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIED-DNGCYPIHIAIKHNFFDIIKLLLE---KGA 181

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 109 IINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSscVKILLDHNANIDIQNgfllryav 188
Cdd:PHA02874  182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS--AIELLINNASINDQD-------- 251

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 189 iksnhsycrmflqrgadtnlgrlEDGQTPLH--LSALRDDVLCAQMLYNyGADTNTRNYEGQTPLAVSI 255
Cdd:PHA02874  252 -----------------------IDGSTPLHhaINPPCDIDIIDILLYH-KADISIKDNKGENPIDTAF 296
PHA03095 PHA03095
ankyrin-like protein; Provisional
 26-177 3.66e-17

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 81.61  E-value: 3.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  26 DVHTVRKMLEQGYSPNGRDANGWTLLHFSA--ARGKERCVRVFLEHGADPTVKDLIGGfTALHYAAMHGRARiarlmles 103
Cdd:PHA03095  166 NVELLRLLIDAGADVYAVDDRFRSLLHHHLqsFKPRARIVRELIRAGCDPAATDMLGN-TPLHSMATGSSCK-------- 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 104 eyRSDI---------INAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNA 174
Cdd:PHA03095  237 --RSLVlplliagisINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNP 314


                  ...
gi 1846695631 175 NID 177
Cdd:PHA03095  315 SAE 317
Ank_2 pfam12796
Ankyrin repeats (3 copies);
51-144 3.77e-17

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 75.15  E-value: 3.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  51 LHFSAARGKERCVRVFLEHGADPTVKDLIgGFTALHYAAMHGRARIARLMLESEyrsdIINAKsNDGWTPLHVAAHYGRD 130
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGADANLQDKN-GRTALHLAAKNGHLEIVKLLLEHA----DVNLK-DNGRTALHYAARSGHL 74

                          90
                  ....*....|....
gi 1846695631 131 SFVRLLLEFKAEVD 144
Cdd:pfam12796  75 EIVKLLLEKGADIN 88
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 30-242 7.62e-17

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 80.48  E-value: 7.62e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  30 VRKMLEQGYSPNGRDANGWTLLHF------SAARGKErCVRVFLEHGADPTVKDlIGGFTALHYAAMHGRARIARLMLES 103
Cdd:PHA03100   51 VKILLDNGADINSSTKNNSTPLHYlsnikyNLTDVKE-IVKLLLEYGANVNAPD-NNGITPLLYAISKKSNSYSIVEYLL 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 104 EYRSDiINAKSNDGWTPLHVAAHYGRDSF--VRLLLEFKAEVDplsdkgttplqlAIIRersscVKILLDHNANIDIQN- 180
Cdd:PHA03100  129 DNGAN-VNIKNSDGENLLHLYLESNKIDLkiLKLLIDKGVDIN------------AKNR-----VNYLLSYGVPINIKDv 190

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1846695631 181 -GFL-LRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNT 242
Cdd:PHA03100  191 yGFTpLHYAVYNNNPEFVKYLLDLGANPNL-VNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKT 253
PHA03095 PHA03095
ankyrin-like protein; Provisional
 26-251 5.66e-16

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 78.14  E-value: 5.66e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  26 DVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERC---VRVFLEHGADPTVKDlIGGFTALHYAAMHG-RARIARLML 101
Cdd:PHA03095   26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVkdiVRLLLEAGADVNAPE-RCGFTPLHLYLYNAtTLDVIKLLI 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 102 esEYRSDiINAKSNDGWTPLHV-----AAHYGrdsFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSS--CVKILLDHNA 174
Cdd:PHA03095  105 --KAGAD-VNAKDKVGRTPLHVylsgfNINPK---VIRLLLRKGADVNALDLYGMTPLAVLLKSRNANveLLRLLIDAGA 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 175 NI----DIQNGFLLRYAV-IKSNHSYCRMFLQRGADTNlGRLEDGQTPLHLSALRDDVLCAQMLyNY---GADTNTRNYE 246
Cdd:PHA03095  179 DVyavdDRFRSLLHHHLQsFKPRARIVRELIRAGCDPA-ATDMLGNTPLHSMATGSSCKRSLVL-PLliaGISINARNRY 256


                  ....*
gi 1846695631 247 GQTPL 251
Cdd:PHA03095  257 GQTPL 261
Ank_2 pfam12796
Ankyrin repeats (3 copies);
21-111 6.86e-16

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 71.69  E-value: 6.86e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGAdptVKDLIGGFTALHYAAMHGRARIARLM 100
Cdd:pfam12796   4 AAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHAD---VNLKDNGRTALHYAARSGHLEIVKLL 80

                          90
                  ....*....|.
gi 1846695631 101 LESEYRSDIIN 111
Cdd:pfam12796  81 LEKGADINVKD 91
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 58-315 1.11e-15

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 77.01  E-value: 1.11e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  58 GKERCVRVFLEHGA-------DPTVKDLIggfTALHYAAMHGRARIARLMLESEYRsdiINAKSNDGWTPLHVAAHY--- 127
Cdd:PHA03100    8 TKSRIIKVKNIKYIimeddlnDYSYKKPV---LPLYLAKEARNIDVVKILLDNGAD---INSSTKNNSTPLHYLSNIkyn 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 128 -GRD-SFVRLLLEFKAEVDPLSDKGTTPLQLAIIRER--SSCVKILLDHNANIDIQN--GFLLRYAVIKSNH---SYCRM 198
Cdd:PHA03100   82 lTDVkEIVKLLLEYGANVNAPDNNGITPLLYAISKKSnsYSIVEYLLDNGANVNIKNsdGENLLHLYLESNKidlKILKL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 199 FLQRGADTN----------LGRLED-----GQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPLavSISIsgssRP 263
Cdd:PHA03100  162 LIDKGVDINaknrvnyllsYGVPINikdvyGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL--HIAI----LN 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1846695631 264 C-LDFLQEVTRQPRNLQDlcrikIRQCIGLQNLKLLDELPIAKVIKDYLKHKF 315
Cdd:PHA03100  236 NnKEIFKLLLNNGPSIKT-----IIETLLYFKDKDLNTITKIKMLKKSIMYMF 283
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 13-259 1.91e-15

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 77.03  E-value: 1.91e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  13 QEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHF-SAARGKERCVRVFLEHGADPTVKDlIGGFTALHYAAMH 91
Cdd:PHA02876  239 KNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHaSQAPSLSRLVPKLLERGADVNAKN-IKGETPLYLMAKN 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  92 G--RARIARLMLeseyRSDIINAKSNDGWTPLHVAAHYGRDS-FVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKI 168
Cdd:PHA02876  318 GydTENIRTLIM----LGADVNAADRLYITPLHQASTLDRNKdIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINT 393

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 169 LLDHNANIDIQN---GFLLRYAVIKSN-HSYCRMFLQRGADTNlGRLEDGQTPLHLSALRD---DVLcaQMLYNYGADTN 241
Cdd:PHA02876  394 LLDYGADIEALSqkiGTALHFALCGTNpYMSVKTLIDRGANVN-SKNKDLSTPLHYACKKNcklDVI--EMLLDNGADVN 470

                         250
                  ....*....|....*...
gi 1846695631 242 TRNYEGQTPLAVSISISG 259
Cdd:PHA02876  471 AINIQNQYPLLIALEYHG 488
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 26-184 8.10e-15

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 74.32  E-value: 8.10e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  26 DVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKE--RCVRVFLEHGADPTVKDLIGgFTALHYAAMHGRA--RIARLML 101
Cdd:PHA03100   85 VKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNsySIVEYLLDNGANVNIKNSDG-ENLLHLYLESNKIdlKILKLLI 163

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 102 ESEYRSDI-------------INAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKI 168
Cdd:PHA03100  164 DKGVDINAknrvnyllsygvpINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL 243

                         170
                  ....*....|....*.
gi 1846695631 169 LLDHNANIDIQNGFLL 184
Cdd:PHA03100  244 LLNNGPSIKTIIETLL 259
Ank_2 pfam12796
Ankyrin repeats (3 copies);
121-208 2.75e-14

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 67.45  E-value: 2.75e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 121 LHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDH-NANIDIQNGFLLRYAVIKSNHSYCRMF 199
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGADANLQDKNGRTALHLAAKNGHLEIVKLLLEHaDVNLKDNGRTALHYAARSGHLEIVKLL 80


                  ....*....
gi 1846695631 200 LQRGADTNL 208
Cdd:pfam12796  81 LEKGADINV 89
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 8-180 1.04e-13

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 71.15  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631   8 RNPELQEELQIqaAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALHY 87
Cdd:PHA02874  120 KDAELKTFLHY--AIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGE-SPLHN 196

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  88 AAMHGRARIARLMLESeyrSDIINAKSNDGWTPLHVAAHYGRdSFVRLLLEfKAEVDPLSDKGTTPLQLAIireRSSC-- 165
Cdd:PHA02874  197 AAEYGDYACIKLLIDH---GNHIMNKCKNGFTPLHNAIIHNR-SAIELLIN-NASINDQDIDGSTPLHHAI---NPPCdi 268

                         170
                  ....*....|....*..
gi 1846695631 166 --VKILLDHNANIDIQN 180
Cdd:PHA02874  269 diIDILLYHKADISIKD 285
PHA03095 PHA03095
ankyrin-like protein; Provisional
 6-227 1.04e-13

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 71.21  E-value: 1.04e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631   6 CRRNPelqeeLQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLH--FSAARGKERCVRVFLEHGADPTVKDLIGgFT 83
Cdd:PHA03095  116 VGRTP-----LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAvlLKSRNANVELLRLLIDAGADVYAVDDRF-RS 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  84 ALHYAAMHGRARiARLMLESEYRSDIINAKSNDGWTPLHVAAHYG--RDSFVRLLLEFKAEVDPLSDKGTTPLQlaiire 161
Cdd:PHA03095  190 LLHHHLQSFKPR-ARIVRELIRAGCDPAATDMLGNTPLHSMATGSscKRSLVLPLLIAGISINARNRYGQTPLH------ 262

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1846695631 162 rsscvkilldhnanidiqngfllrYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDV 227
Cdd:PHA03095  263 ------------------------YAAVFNNPRACRRLIALGADINA-VSSDGNTPLSLMVRNNNG 303
PHA03095 PHA03095
ankyrin-like protein; Provisional
 30-255 1.74e-13

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 70.44  E-value: 1.74e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  30 VRKMLEQGYSPNGRDANGWTLLHFSAARG-KERCVRVFLEHGADPTVKDLIgGFTALH-YAA-MHGRARIARLMLEseyR 106
Cdd:PHA03095   66 VRLLLEAGADVNAPERCGFTPLHLYLYNAtTLDVIKLLIKAGADVNAKDKV-GRTPLHvYLSgFNINPKVIRLLLR---K 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 107 SDIINAKSNDGWTPLHVAAHYGR--DSFVRLLLEFKAEVDPLSDKGTTPLQ--LAIIRERSSCVKILLDHNANIDIQNGF 182
Cdd:PHA03095  142 GADVNALDLYGMTPLAVLLKSRNanVELLRLLIDAGADVYAVDDRFRSLLHhhLQSFKPRARIVRELIRAGCDPAATDML 221

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 183 LLRYAVIKSNHSYCRM-----FLQRGADTNLgRLEDGQTPLHL-SALRDDVLCAQMLyNYGADTNTRNYEGQTPLAVSI 255
Cdd:PHA03095  222 GNTPLHSMATGSSCKRslvlpLLIAGISINA-RNRYGQTPLHYaAVFNNPRACRRLI-ALGADINAVSSDGNTPLSLMV 298
SOCS_ASB_like cd03716
SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB ...
 273-314 1.02e-12

SOCS (suppressors of cytokine signaling) box of ASB (ankyrin repeat and SOCS box) and SSB (SPRY domain-containing SOCS box proteins) protein families. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence of a variable number of repeats. SSB proteins contain a central SPRY domain and a C-terminal SOCS. Recently, it has been shown that all four SSB proteins interact with the MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF), and that SSB-1, SSB-2, and SSB-4 interact with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain.


Pssm-ID: 239686  Cd Length: 42  Bit Score: 61.36  E-value: 1.02e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03716     1 STPRSLQHLCRLAIRRCLGRRRLELIKKLPLPPRLKDYLLYE 42
SOCS cd03587
SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region ...
 274-314 1.08e-12

SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins with a SOCS box), and WSBs (WD40 repeat-containing proteins with a SOCS box), as well as, other miscellaneous proteins. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239641  Cd Length: 41  Bit Score: 61.33  E-value: 1.08e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03587     1 NPRSLQHLCRLAIRRCLGKRRLDLIDKLPLPPRLKDYLLYK 41
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 18-158 2.81e-12

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 66.91  E-value: 2.81e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  18 IQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKdLIGGFTALHYAAMHGRARIA 97
Cdd:PHA02874  161 IHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK-CKNGFTPLHNAIIHNRSAIE 239

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1846695631  98 RLMleseyRSDIINAKSNDGWTPLHVAAHYGRD-SFVRLLLEFKAEVDPLSDKGTTPLQLAI 158
Cdd:PHA02874  240 LLI-----NNASINDQDIDGSTPLHHAINPPCDiDIIDILLYHKADISIKDNKGENPIDTAF 296
PLN03192 PLN03192
Voltage-dependent potassium channel; Provisional
 20-180 2.24e-11

Voltage-dependent potassium channel; Provisional


Pssm-ID: 215625 [Multi-domain]  Cd Length: 823  Bit Score: 64.50  E-value: 2.24e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  20 AAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDlIGGFTALHYAAMHGRARIARL 99
Cdd:PLN03192  531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD-ANGNTALWNAISAKHHKIFRI 609

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 100 MLESEYRSDiinakSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQ 179
Cdd:PLN03192  610 LYHFASISD-----PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA 684


                  .
gi 1846695631 180 N 180
Cdd:PLN03192  685 N 685
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 84-256 6.43e-11

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 62.70  E-value: 6.43e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  84 ALHYAAMHGRARIARLMLESEYRSdiiNAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERS 163
Cdd:PHA02875    5 ALCDAILFGELDIARRLLDIGINP---NFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 164 SCVKILLDHNANID---IQNGFL-LRYAVIKSNHSYCRMFLQRGADTNLGRlEDGQTPLHLSALRDDVLCAQMLYNYGAD 239
Cdd:PHA02875   82 KAVEELLDLGKFADdvfYKDGMTpLHLATILKKLDIMKLLIARGADPDIPN-TDKFSPLHLAVMMGDIKGIELLIDHKAC 160

                         170
                  ....*....|....*..
gi 1846695631 240 TNTRNYEGQTPLAVSIS 256
Cdd:PHA02875  161 LDIEDCCGCTPLIIAMA 177
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 4-239 1.62e-10

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 62.00  E-value: 1.62e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631   4 HHCRRNPELQEELQIQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLiGGFT 83
Cdd:PHA02876  135 HYDKINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIAL-DDLS 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  84 ALHYAAMHGRARIARLMLESeyRSDI-------INAKSNDGW---------------------TPLHVAAHygRDSFVRL 135
Cdd:PHA02876  214 VLECAVDSKNIDTIKAIIDN--RSNInkndlslLKAIRNEDLetslllydagfsvnsiddcknTPLHHASQ--APSLSRL 289

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 136 ---LLEFKAEVDPLSDKGTTPLQL-AIIRERSSCVKILL----DHNANIDIQNGFLLRYAVIKSNHSYCRMFLQRGADTN 207
Cdd:PHA02876  290 vpkLLERGADVNAKNIKGETPLYLmAKNGYDTENIRTLImlgaDVNAADRLYITPLHQASTLDRNKDIVITLLELGANVN 369

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1846695631 208 LGRLEDgQTPLHLSALRDDVLCAQMLYNYGAD 239
Cdd:PHA02876  370 ARDYCD-KTPIHYAAVRNNVVIINTLLDYGAD 400
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 95-251 7.66e-10

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 59.69  E-value: 7.66e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  95 RIARLMLEseyRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNA 174
Cdd:PHA02876  159 LIAEMLLE---GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKAIIDNRS 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 175 NIDiQNGFLLRYAVIKSNHSYCRMFLQRGADTNlgRLEDGQ-TPLHLSALRDDV--LCAQMLyNYGADTNTRNYEGQTPL 251
Cdd:PHA02876  236 NIN-KNDLSLLKAIRNEDLETSLLLYDAGFSVN--SIDDCKnTPLHHASQAPSLsrLVPKLL-ERGADVNAKNIKGETPL 311
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 23-101 8.89e-10

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 59.53  E-value: 8.89e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631  23 AAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALHYAAMHGRARIARLML 101
Cdd:PTZ00322   91 ASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK-TPLELAEENGFREVVQLLS 168
SOCS_box pfam07525
SOCS box; The SOCS box acts as a bridge between specific substrate- binding domains and more ...
 274-312 4.79e-09

SOCS box; The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases.


Pssm-ID: 462192  Cd Length: 39  Bit Score: 51.40  E-value: 4.79e-09
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLK 312
Cdd:pfam07525   1 TPRSLQHLCRLAIRRALGKRRLGAIDKLPLPPLLKDYLL 39
Ank_4 pfam13637
Ankyrin repeats (many copies);
47-101 5.98e-09

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 51.51  E-value: 5.98e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1846695631  47 GWTLLHFSAARGKERCVRVFLEHGADPTVKDlIGGFTALHYAAMHGRARIARLML 101
Cdd:pfam13637   1 ELTALHAAAASGHLELLRLLLEKGADINAVD-GNGETALHFAASNGNVEVLKLLL 54
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 72-172 8.34e-09

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 56.45  E-value: 8.34e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  72 DPTVKDLIGgfTALHYAAMHGRARIARLMLESEYRSdiiNAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGT 151
Cdd:PTZ00322   75 DPVVAHMLT--VELCQLAASGDAVGARILLTGGADP---NCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGK 149

                          90       100
                  ....*....|....*....|.
gi 1846695631 152 TPLQLAIIRERSSCVKILLDH 172
Cdd:PTZ00322  150 TPLELAEENGFREVVQLLSRH 170
Ank_4 pfam13637
Ankyrin repeats (many copies);
117-170 2.13e-08

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 49.97  E-value: 2.13e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1846695631 117 GWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILL 170
Cdd:pfam13637   1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
PHA02878 PHA02878
ankyrin repeat protein; Provisional
 26-192 2.95e-08

ankyrin repeat protein; Provisional


Pssm-ID: 222939 [Multi-domain]  Cd Length: 477  Bit Score: 54.89  E-value: 2.95e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  26 DVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALHYAAmhGRAR---IARLMLE 102
Cdd:PHA02878  180 DQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGN-TPLHISV--GYCKdydILKLLLE 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 103 seyRSDIINAKSN-DGWTPLHVAAHYGRDsfVRLLLEFKAEVDPLSDKGTTPLQLAII-RERSSCVKILLDH-----NAN 175
Cdd:PHA02878  257 ---HGVDVNAKSYiLGLTALHSSIKSERK--LKLLLEYGADINSLNSYKLTPLSSAVKqYLCINIGRILISNicllkRIK 331

                         170
                  ....*....|....*....
gi 1846695631 176 IDIQN--GFLLRYAVIKSN 192
Cdd:PHA02878  332 PDIKNseGFIDNMDCITSN 350
PLN03192 PLN03192
Voltage-dependent potassium channel; Provisional
 86-256 9.68e-08

Voltage-dependent potassium channel; Provisional


Pssm-ID: 215625 [Multi-domain]  Cd Length: 823  Bit Score: 53.33  E-value: 9.68e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  86 HYAAMHGrARIARLMLESEYRSDIINAKSNdgwtpLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSC 165
Cdd:PLN03192  500 HHKELHD-LNVGDLLGDNGGEHDDPNMASN-----LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDC 573

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 166 VKILLDHNANI---DIQNGFLLRYAVIKSNHSYCRMFLQrgadtnLGRLEDGQTP---LHLSALRDDVLCAQMLYNYGAD 239
Cdd:PLN03192  574 VLVLLKHACNVhirDANGNTALWNAISAKHHKIFRILYH------FASISDPHAAgdlLCTAAKRNDLTAMKELLKQGLN 647

                         170
                  ....*....|....*..
gi 1846695631 240 TNTRNYEGQTPLAVSIS 256
Cdd:PLN03192  648 VDSEDHQGATALQVAMA 664
SOCS_SOCS_like cd03717
SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of ...
 274-312 2.03e-07

SOCS (suppressors of cytokine signaling) box of SOCS-like proteins. The CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. These intracellular proteins regulate the responses of immune cells to cytokines. Identified as negative regulators of the cytokine-JAK-STAT pathway, they seem to play a role in many immunological and pathological processes. The function of the SOCS box is the recruitment of the ubiquitin-transferase system. Related SOCS boxes are also present in Rab40-like proteins and insect proteins of unknown function that also contain a NEUZ (domain in neuralized proteins) domain.


Pssm-ID: 239687  Cd Length: 39  Bit Score: 46.82  E-value: 2.03e-07
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNlklLDELPIAKVIKDYLK 312
Cdd:cd03717     2 SVRSLQHLCRFVIRQCTRRDL---IDQLPLPRRLKDYLK 37
PHA03100 PHA03100
ankyrin repeat protein; Provisional
 127-256 5.42e-07

ankyrin repeat protein; Provisional


Pssm-ID: 222984 [Multi-domain]  Cd Length: 422  Bit Score: 50.82  E-value: 5.42e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 127 YGRDSFVRLLLEFKA-----EVDPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGFLLRYAVIKSNHSY------ 195
Cdd:PHA03100    7 LTKSRIIKVKNIKYIimeddLNDYSYKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYnltdvk 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1846695631 196 --CRMFLQRGADTNLGRLEdGQTPLH--LSALRDDVLCAQMLYNYGADTNTRNYEGQTPLAVSIS 256
Cdd:PHA03100   87 eiVKLLLEYGANVNAPDNN-GITPLLyaISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLE 150
PHA02876 PHA02876
ankyrin repeat protein; Provisional
 19-176 7.02e-07

ankyrin repeat protein; Provisional


Pssm-ID: 165207 [Multi-domain]  Cd Length: 682  Bit Score: 50.83  E-value: 7.02e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  19 QAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGAD-PTVKDLIGgfTALHYAAMHGRARIA 97
Cdd:PHA02876  347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADiEALSQKIG--TALHFALCGTNPYMS 424

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  98 RLMLESeyRSDIINAKSNDGWTPLHVAAHYG-RDSFVRLLLEFKAEVDPLSDKGTTPLQLAIirERSSCVKILLDHNANI 176
Cdd:PHA02876  425 VKTLID--RGANVNSKNKDLSTPLHYACKKNcKLDVIEMLLDNGADVNAINIQNQYPLLIAL--EYHGIVNILLHYGAEL 500
Ank_4 pfam13637
Ankyrin repeats (many copies);
83-137 7.44e-07

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 45.34  E-value: 7.44e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1846695631  83 TALHYAAMHGRARIARLMLESEYRsdiINAKSNDGWTPLHVAAHYGRDSFVRLLL 137
Cdd:pfam13637   3 TALHAAAASGHLELLRLLLEKGAD---INAVDGNGETALHFAASNGNVEVLKLLL 54
PHA02946 PHA02946
ankyin-like protein; Provisional
 26-121 9.93e-07

ankyin-like protein; Provisional


Pssm-ID: 165256 [Multi-domain]  Cd Length: 446  Bit Score: 50.05  E-value: 9.93e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  26 DVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALHYAAMHGRARIARLMLESEY 105
Cdd:PHA02946   51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHK-TPLYYLSGTDDEVIERINLLVQY 129

                          90
                  ....*....|....*.
gi 1846695631 106 RSDIINAKSNDGWTPL 121
Cdd:PHA02946  130 GAKINNSVDEEGCGPL 145
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 106-255 1.02e-06

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 49.96  E-value: 1.02e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 106 RSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHNAN---------- 175
Cdd:PHA02874   24 KGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDtsilpipcie 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 176 -------------IDIQNGFL---LRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYGAD 239
Cdd:PHA02874  104 kdmiktildcgidVNIKDAELktfLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKGAY 182

                         170
                  ....*....|....*.
gi 1846695631 240 TNTRNYEGQTPLAVSI 255
Cdd:PHA02874  183 ANVKDNNGESPLHNAA 198
PHA02884 PHA02884
ankyrin repeat protein; Provisional
 184-314 1.04e-06

ankyrin repeat protein; Provisional


Pssm-ID: 165212 [Multi-domain]  Cd Length: 300  Bit Score: 49.60  E-value: 1.04e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 184 LRYAVIKSNHSYCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPLAVsisisgSSRP 263
Cdd:PHA02884   74 LIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIEL------ALMI 147

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1846695631 264 CLDFLQEVTRQpRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:PHA02884  148 CNNFLAFMICD-NEISNFYKHPKKILINFDILKILVSHFILQASNDRLNEK 197
PHA02874 PHA02874
ankyrin repeat protein; Provisional
 21-265 1.26e-06

ankyrin repeat protein; Provisional


Pssm-ID: 165205 [Multi-domain]  Cd Length: 434  Bit Score: 49.58  E-value: 1.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTV-------KDLIggftalhyaamhgr 93
Cdd:PHA02874   42 AIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSIlpipcieKDMI-------------- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  94 ariaRLMLESEYRSDIINAKSNdgwTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERSSCVKILLDHN 173
Cdd:PHA02874  108 ----KTILDCGIDVNIKDAELK---TFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 174 AnidiqngfllrYAVIKSNHsycrmflqrgadtnlgrledGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPLAV 253
Cdd:PHA02874  181 A-----------YANVKDNN--------------------GESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHN 229

                         250
                  ....*....|..
gi 1846695631 254 SISISGSSRPCL 265
Cdd:PHA02874  230 AIIHNRSAIELL 241
SOCS_ASB2 cd03721
SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a ...
 275-314 1.28e-06

SOCS (suppressors of cytokine signaling) box of ASB2-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB2 targets specific proteins to destruction by the proteasome in leukemia cells that have been induced to differentiate. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239691  Cd Length: 45  Bit Score: 44.47  E-value: 1.28e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1846695631 275 PRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03721     3 PRPLAHLCRLKVRTLIGINRIKLIDTLPLPPRLIRYLNHQ 42
Ank_4 pfam13637
Ankyrin repeats (many copies);
18-67 3.55e-06

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 43.42  E-value: 3.55e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1846695631  18 IQAAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFL 67
Cdd:pfam13637   5 LHAAAASGHLELLRLLLEKGADINAVDGNGETALHFAASNGNVEVLKLLL 54
ANKYR COG0666
Ankyrin repeat [Signal transduction mechanisms];
20-117 4.29e-06

Ankyrin repeat [Signal transduction mechanisms];


Pssm-ID: 440430 [Multi-domain]  Cd Length: 289  Bit Score: 47.64  E-value: 4.29e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  20 AAVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALHYAAMHGRARIARL 99
Cdd:COG0666   192 LAAENGHLEIVKLLLEAGADVNAKDNDGKTALDLAAENGNLEIVKLLLEAGADLNAKDKDGL-TALLLAAAAGAALIVKL 270

                          90
                  ....*....|....*...
gi 1846695631 100 MLESEYRSDIINAKSNDG 117
Cdd:COG0666   271 LLLALLLLAAALLDLLTL 288
SOCS smart00253
suppressors of cytokine signalling; suppressors of cytokine signalling
 273-314 4.59e-06

suppressors of cytokine signalling; suppressors of cytokine signalling


Pssm-ID: 128549  Cd Length: 43  Bit Score: 43.05  E-value: 4.59e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1846695631  273 RQPRNLQDLCRIKIRQCIGLQNLKlldELPIAKVIKDYLKHK 314
Cdd:smart00253   5 SNVPSLQHLCRFTIRRCTRTDQIK---TLPLPPKLKDYLSYY 43
TRPV5-6 cd22192
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ...
 81-222 5.08e-06

Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.


Pssm-ID: 411976 [Multi-domain]  Cd Length: 609  Bit Score: 48.09  E-value: 5.08e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  81 GFTALHYAAMHGRARIARLMLEsEYRSDIINAKSND---GWTPLHVAAHYGRDSFVRLLLEFKAEV-------------- 143
Cdd:cd22192    51 GETALHVAALYDNLEAAVVLME-AAPELVNEPMTSDlyqGETALHIAVVNQNLNLVRELIARGADVvspratgtffrpgp 129

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 144 DPLSDKGTTPLQLAIIRERSSCVKILLDHNANIDIQNGF---LLRYAVIKSNHSY-CRMF---LQRGADTNLGRLE---- 212
Cdd:cd22192   130 KNLIYYGEHPLSFAACVGNEEIVRLLIEHGADIRAQDSLgntVLHILVLQPNKTFaCQMYdliLSYDKEDDLQPLDlvpn 209

                         170
                  ....*....|.
gi 1846695631 213 -DGQTPLHLSA 222
Cdd:cd22192   210 nQGLTPFKLAA 220
Ank_5 pfam13857
Ankyrin repeats (many copies);
104-157 7.33e-06

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 42.72  E-value: 7.33e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1846695631 104 EYRSDIINAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLA 157
Cdd:pfam13857   3 EHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTALDLA 56
PTZ00322 PTZ00322
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
 197-254 8.28e-06

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional


Pssm-ID: 140343 [Multi-domain]  Cd Length: 664  Bit Score: 47.20  E-value: 8.28e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1846695631 197 RMFLQRGADTNlGRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPLAVS 254
Cdd:PTZ00322   99 RILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155
SOCS_box smart00969
The SOCS box acts as a bridge between specific substrate- binding domains and more generic ...
 278-314 1.14e-05

The SOCS box acts as a bridge between specific substrate- binding domains and more generic proteins that comprise a large family of E3 ubiquitin protein ligases;


Pssm-ID: 198037  Cd Length: 34  Bit Score: 41.63  E-value: 1.14e-05
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 1846695631  278 LQDLCRIKIRQCIGlqnlkLLDELPIAKVIKDYLKHK 314
Cdd:smart00969   3 LQHLCRLAIRRSLG-----GIDKLPLPPRLKDYLLYY 34
SOCS_SSB1_4 cd03718
SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box ...
 274-311 2.24e-05

SOCS (suppressors of cytokine signaling) box of SSB1 and SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB1 and SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF) and also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239688  Cd Length: 42  Bit Score: 41.13  E-value: 2.24e-05
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYL 311
Cdd:cd03718     2 EPLPLMDLCRRRVRVALGRDRLEEIEQLPLPPSLKNYL 39
Ank_5 pfam13857
Ankyrin repeats (many copies);
67-124 4.01e-05

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 40.79  E-value: 4.01e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1846695631  67 LEHGADPTVKDLIGGFTALHYAAMHGRARIARLMLesEYRSDiINAKSNDGWTPLHVA 124
Cdd:pfam13857   2 LEHGPIDLNRLDGEGYTPLHVAAKYGALEIVRVLL--AYGVD-LNLKDEEGLTALDLA 56
SOCS_ASB14 cd03730
SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a ...
 275-318 5.17e-05

SOCS (suppressors of cytokine signaling) box of ASB14-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239700  Cd Length: 57  Bit Score: 40.21  E-value: 5.17e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1846695631 275 PRNLQDLCRIKIRQCIGLQNLK---LLDELPIAKVIKDYLKHKFDDI 318
Cdd:cd03730     3 PRSLKHLCRLKIRACMGRLRLRcpvFMSFLPLPNRLKAYILYKEYDL 49
SOCS_SSB4 cd03743
SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box ...
 274-314 5.62e-05

SOCS (suppressors of cytokine signaling) box of SSB4 (SPRY domain-containing SOCS box proteins)-like proteins. SSB proteins contain a central SPRY domain and a C-terminal SOCS. SSB4 has been shown to bind to MET, the receptor protein-tyrosine kinase for hepatocyte growth factor (HGF). SSB4, like SSB2 and SSB1, also interacts with prostate apoptosis response protein-4. Both types of interactions are mediated through the SPRY domain. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239712  Cd Length: 42  Bit Score: 39.94  E-value: 5.62e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03743     2 EPLPLMDLCRRSARQALGRHRLHHIQSLPLPQTLKNYLQYQ 42
SOCS_ASB15 cd03731
SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a ...
 275-318 8.77e-05

SOCS (suppressors of cytokine signaling) box of ASB15-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Human ASB15 is expressed predominantly in skeletal muscle and participates in the regulation of protein turnover and muscle cell development by stimulating protein synthesis and regulating differentiation of muscle cells. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239701  Cd Length: 56  Bit Score: 39.82  E-value: 8.77e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1846695631 275 PRNLQDLCRIKIRQCIGLQNLKLL---DELPIAKVIKDYLKHKFDDI 318
Cdd:cd03731     3 PRPLKHLCRLKIRKLMGLQKLQQPssmKKLPLPPALKRYILYKEYDL 49
SOCS_ASB5 cd03724
SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a ...
 275-314 8.89e-05

SOCS (suppressors of cytokine signaling) box of ASB5-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. ASB5 has been implicated in the initiation of arteriogenesis. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239694  Cd Length: 42  Bit Score: 39.48  E-value: 8.89e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1846695631 275 PRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03724     3 PSSLCQLCRLCIRNYIGRSRLHLIPQLQLPTLLKNFLQYR 42
PHA03095 PHA03095
ankyrin-like protein; Provisional
 110-256 9.44e-05

ankyrin-like protein; Provisional


Pssm-ID: 222980 [Multi-domain]  Cd Length: 471  Bit Score: 43.86  E-value: 9.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 110 INAKSNDGWTPLHVAAHYGRD---SFVRLLLEFKAEVDPLSDKGTTPLQLaiirersscvkiLLDHNANIDIqngfllry 186
Cdd:PHA03095   40 VNFRGEYGKTPLHLYLHYSSEkvkDIVRLLLEAGADVNAPERCGFTPLHL------------YLYNATTLDV-------- 99

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1846695631 187 aviksnhsyCRMFLQRGADTNLgRLEDGQTPLH--LSALRDDVLCAQMLYNYGADTNTRNYEGQTPLAVSIS 256
Cdd:PHA03095  100 ---------IKLLIKAGADVNA-KDKVGRTPLHvyLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLK 161
SOCS_SOCS1 cd03735
SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the ...
 273-312 1.18e-04

SOCS (suppressors of cytokine signaling) box of SOCS1-like proteins. Together with CIS1, the CIS/SOCS family of proteins is characterized by the presence of a C-terminal SOCS box and a central SH2 domain. SOCS1, like CIS1 and SOCS3, is involved in the down-regulation of the JAK/STAT pathway. SOCS1 has a dual function as a direct potent JAK kinase inhibitor and as a component of an E3 ubiquitin-ligase complex recruiting substrates to the protein degradation machinery.


Pssm-ID: 239704  Cd Length: 43  Bit Score: 39.13  E-value: 1.18e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNlklLDELPIAKVIKDYLK 312
Cdd:cd03735     1 VRVRPLQELCRKSIVATFGREN---LARIPLNPVLKDYLK 37
PHA02875 PHA02875
ankyrin repeat protein; Provisional
 21-127 1.28e-04

ankyrin repeat protein; Provisional


Pssm-ID: 165206 [Multi-domain]  Cd Length: 413  Bit Score: 43.44  E-value: 1.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQGYSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGFTALHYAAMHGRARIARLM 100
Cdd:PHA02875  142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221

                          90       100
                  ....*....|....*....|....*..
gi 1846695631 101 LESEYRSDIINAKSNDGWTPLHVAAHY 127
Cdd:PHA02875  222 IKRGADCNIMFMIEGEECTILDMICNM 248
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 116-144 1.83e-04

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 38.04  E-value: 1.83e-04
                          10        20        30
                  ....*....|....*....|....*....|
gi 1846695631 116 DGWTPLHVAA-HYGRDSFVRLLLEFKAEVD 144
Cdd:pfam00023   1 DGNTPLHLAAgRRGNLEIVKLLLSKGADVN 30
Ank_2 pfam12796
Ankyrin repeats (3 copies);
184-256 1.95e-04

Ankyrin repeats (3 copies);


Pssm-ID: 463710 [Multi-domain]  Cd Length: 91  Bit Score: 39.71  E-value: 1.95e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1846695631 184 LRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQMLYNYgADTNTRNYeGQTPLAVSIS 256
Cdd:pfam12796   1 LHLAAKNGNLELVKLLLENGADANL-QDKNGRTALHLAAKNGHLEIVKLLLEH-ADVNLKDN-GRTALHYAAR 70
Ank_3 pfam13606
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 116-144 2.20e-04

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities.


Pssm-ID: 463933 [Multi-domain]  Cd Length: 30  Bit Score: 38.01  E-value: 2.20e-04
                          10        20
                  ....*....|....*....|....*....
gi 1846695631 116 DGWTPLHVAAHYGRDSFVRLLLEFKAEVD 144
Cdd:pfam13606   1 DGNTPLHLAARNGRLEIVKLLLENGADIN 29
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 116-144 4.36e-04

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 37.18  E-value: 4.36e-04
                           10        20
                   ....*....|....*....|....*....
gi 1846695631  116 DGWTPLHVAAHYGRDSFVRLLLEFKAEVD 144
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADIN 29
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 46-77 4.62e-04

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 36.88  E-value: 4.62e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1846695631  46 NGWTLLHFSAAR-GKERCVRVFLEHGADPTVKD 77
Cdd:pfam00023   1 DGNTPLHLAAGRrGNLEIVKLLLSKGADVNARD 33
trp TIGR00870
transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ ...
 16-107 4.89e-04

transient-receptor-potential calcium channel protein; The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999). [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273311 [Multi-domain]  Cd Length: 743  Bit Score: 41.61  E-value: 4.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  16 LQIQAAVAAGDVhtVRKMLEQGYSPNGRDANGWTLLH-------FSAARGKERC-----VRVFLEHGADPTVKDLI---G 80
Cdd:TIGR00870 179 LNAAACLGSPSI--VALLSEDPADILTADSLGNTLLHllvmeneFKAEYEELSCqmynfALSLLDKLRDSKELEVIlnhQ 256

                          90       100
                  ....*....|....*....|....*..
gi 1846695631  81 GFTALHYAAMHGRARIARLMLESEYRS 107
Cdd:TIGR00870 257 GLTPLKLAAKEGRIVLFRLKLAIKYKQ 283
SOCS_ASB1 cd03720
SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a ...
 273-313 5.00e-04

SOCS (suppressors of cytokine signaling) box of ASB1-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239690  Cd Length: 42  Bit Score: 37.01  E-value: 5.00e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1846695631 273 RQPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKH 313
Cdd:cd03720     1 GNPRSLLSLCRIAVRRALGKQRLSLICSLPLPDPIKKFLLH 41
SOCS_ASB4_ASB18 cd03723
SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members ...
 274-311 6.09e-04

SOCS (suppressors of cytokine signaling) box of ASB4 and ASB18 proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. Asb4 was identified as imprinted gene in mice. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239693  Cd Length: 48  Bit Score: 37.03  E-value: 6.09e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1846695631 274 QPRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYL 311
Cdd:cd03723     2 TPRSLQHLCRCAIRKLLGSRCHKLVPQLSLPTSLKNYL 39
Ank_5 pfam13857
Ankyrin repeats (many copies);
39-88 7.24e-04

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 36.94  E-value: 7.24e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1846695631  39 SPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDlIGGFTALHYA 88
Cdd:pfam13857   8 DLNRLDGEGYTPLHVAAKYGALEIVRVLLAYGVDLNLKD-EEGLTALDLA 56
TRPV5-6 cd22192
Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and ...
 21-128 1.02e-03

Transient Receptor Potential channel, Vanilloid subfamily (TRPV), types 5 and 6; TRPV5 and TRPV6 (TRPV5/6) are two homologous members within the vanilloid subfamily of the transient receptor potential (TRP) family. TRPV5 and TRPV6 show only 30-40% homology with other members of the TRP family and have unique properties that differentiates them from other TRP channels. They mediate calcium uptake in epithelia and their expression is dramatically increased in numerous types of cancer. The structure of TRPV5/6 shows the typical topology features of all TRP family members, such as six transmembrane regions, a short hydrophobic stretch between transmembrane segments 5 and 6, which is predicted to form the Ca2+ pore, and large intracellular N- and C-terminal domains. The N-terminal domain of TRPV5/6 contains three ankyrin repeats. This structural element is present in several proteins and plays a role in protein-protein interactions. The N- and C-terminal tails of TRPV5/6 each contain an internal PDZ motif which can function as part of a molecular scaffold via interaction with PDZ-domain containing proteins. A major difference between the properties of TRPV5 and TRPV6 is in their tissue distribution: TRPV5 is predominantly expressed in the distal convoluted tubules (DCT) and connecting tubules (CNT) of the kidney, with limited expression in extrarenal tissues. In contrast, TRPV6 has a broader expression pattern such as expression in the intestine, kidney, placenta, epididymis, exocrine tissues, and a few other tissues.


Pssm-ID: 411976 [Multi-domain]  Cd Length: 609  Bit Score: 40.77  E-value: 1.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631  21 AVAAGDVHTVRKMLEQG--------------YSPNGRDANGWTLLHFSAARGKERCVRVFLEHGADPTVKDLIGGfTALH 86
Cdd:cd22192    96 AVVNQNLNLVRELIARGadvvspratgtffrPGPKNLIYYGEHPLSFAACVGNEEIVRLLIEHGADIRAQDSLGN-TVLH 174

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1846695631  87 YAAMHGRARIARLM----LESEYRSDII---NAKSNDGWTPLHVAAHYG 128
Cdd:cd22192   175 ILVLQPNKTFACQMydliLSYDKEDDLQpldLVPNNQGLTPFKLAAKEG 223
SOCS_ASB13 cd03729
SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a ...
 275-314 1.04e-03

SOCS (suppressors of cytokine signaling) box of ASB13-like proteins. ASB family members have a C-terminal SOCS box and an N-terminal ankyrin-related sequence. The general function of the SOCS box is the recruitment of the ubiquitin-transferase system. The SOCS box interacts with Elongins B and C, Cullin-5 or Cullin-2, Rbx-1, and E2. Therefore, SOCS-box-containing proteins probably function as E3 ubiquitin ligases and mediate the degradation of proteins associated through their N-terminal regions.


Pssm-ID: 239699  Cd Length: 42  Bit Score: 36.30  E-value: 1.04e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1846695631 275 PRNLQDLCRIKIRQCIGLQNLKLLDELPIAKVIKDYLKHK 314
Cdd:cd03729     3 PLSLQQLCRINLRKALGTRALEKIAKLNIPNRIIDYLSYN 42
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 149-180 1.11e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 36.11  E-value: 1.11e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1846695631 149 KGTTPLQLAIIRERS-SCVKILLDHNANIDIQN 180
Cdd:pfam00023   1 DGNTPLHLAAGRRGNlEIVKLLLSKGADVNARD 33
PHA02884 PHA02884
ankyrin repeat protein; Provisional
 119-179 1.12e-03

ankyrin repeat protein; Provisional


Pssm-ID: 165212 [Multi-domain]  Cd Length: 300  Bit Score: 39.97  E-value: 1.12e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1846695631 119 TPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGT-TPLQLAIIRERSSCVKILLDHNANIDIQ 179
Cdd:PHA02884   72 NPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKiTPLYISVLHGCLKCLEILLSYGADINIQ 133
PHA02878 PHA02878
ankyrin repeat protein; Provisional
 120-311 1.75e-03

ankyrin repeat protein; Provisional


Pssm-ID: 222939 [Multi-domain]  Cd Length: 477  Bit Score: 39.86  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 120 PLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLA-----------IIRERSSC------VKI-LLDHNANIDIQNG 181
Cdd:PHA02878   40 PLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIIckepnklgmkeMIRSINKCsvfytlVAIkDAFNNRNVEIFKI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1846695631 182 FLLRYavIKSNHS------------------YCRMFLQRGADTNLGRLEDGQTPLHLSALRDDVLCAQMLYNYGADTNTR 243
Cdd:PHA02878  120 ILTNR--YKNIQTidlvyidkkskddiieaeITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIP 197

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1846695631 244 NYEGQTPLavSISISGSSRPCLDFLQEvTRQPRNLQDLC-----RIKIRQCIGLQNLKLLDELPIAKVIKDYL 311
Cdd:PHA02878  198 DKTNNSPL--HHAVKHYNKPIVHILLE-NGASTDARDKCgntplHISVGYCKDYDILKLLLEHGVDVNAKSYI 267
Ank_5 pfam13857
Ankyrin repeats (many copies);
202-251 3.24e-03

Ankyrin repeats (many copies);


Pssm-ID: 433530 [Multi-domain]  Cd Length: 56  Bit Score: 35.40  E-value: 3.24e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1846695631 202 RGADTNLGRLEdGQTPLHLSALRDDVLCAQMLYNYGADTNTRNYEGQTPL 251
Cdd:pfam13857   5 GPIDLNRLDGE-GYTPLHVAAKYGALEIVRVLLAYGVDLNLKDEEGLTAL 53
Ank pfam00023
Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the ...
 213-244 3.40e-03

Ankyrin repeat; Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity.


Pssm-ID: 459634 [Multi-domain]  Cd Length: 34  Bit Score: 34.57  E-value: 3.40e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1846695631 213 DGQTPLHLSALR-DDVLCAQMLYNYGADTNTRN 244
Cdd:pfam00023   1 DGNTPLHLAAGRrGNLEIVKLLLSKGADVNARD 33
Ank_4 pfam13637
Ankyrin repeats (many copies);
150-200 3.48e-03

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 34.94  E-value: 3.48e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1846695631 150 GTTPLQLAIIRERSSCVKILLDHNANIDIQNGF---LLRYAVIKSNHSYCRMFL 200
Cdd:pfam13637   1 ELTALHAAAASGHLELLRLLLEKGADINAVDGNgetALHFAASNGNVEVLKLLL 54
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 149-178 5.84e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 33.72  E-value: 5.84e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1846695631  149 KGTTPLQLAIIRERSSCVKILLDHNANIDI 178
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Ank_4 pfam13637
Ankyrin repeats (many copies);
183-233 8.20e-03

Ankyrin repeats (many copies);


Pssm-ID: 372654 [Multi-domain]  Cd Length: 54  Bit Score: 34.17  E-value: 8.20e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1846695631 183 LLRYAVIKSNHSYCRMFLQRGADTNLgRLEDGQTPLHLSALRDDVLCAQML 233
Cdd:pfam13637   4 ALHAAAASGHLELLRLLLEKGADINA-VDGNGETALHFAASNGNVEVLKLL 53
PHA02917 PHA02917
ankyrin-like protein; Provisional
 110-177 8.48e-03

ankyrin-like protein; Provisional


Pssm-ID: 165231 [Multi-domain]  Cd Length: 661  Bit Score: 37.67  E-value: 8.48e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1846695631 110 INAKSNDGWTPLHVAAHYGRDSFVRLLLEFKAEVDPLSDKGTTPLQLAIIRERS-SCVKILLDHNANID 177
Cdd:PHA02917  445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNiELLKMLLCHKPTLD 513
ANK smart00248
ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four ...
 46-75 8.74e-03

ankyrin repeats; Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.


Pssm-ID: 197603 [Multi-domain]  Cd Length: 30  Bit Score: 33.33  E-value: 8.74e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1846695631   46 NGWTLLHFSAARGKERCVRVFLEHGADPTV 75
Cdd:smart00248   1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH