NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1720412881|ref|XP_030110193|]
View 

tetratricopeptide repeat protein 28 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1225-1548 1.51e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.98  E-value: 1.51e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1225 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1304
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1305 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1380
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1381 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1454
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1455 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1533
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1720412881 1534 ----FSHPSNWAGFTLIGS 1548
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
782-1548 2.63e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


:

Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 149.35  E-value: 2.63e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  782 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 861
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  862 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 941
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  942 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1021
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1022 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1101
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1102 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1181
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1182 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1261
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1262 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1341
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1342 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1420
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1421 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1496
Cdd:COG4995    598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720412881 1497 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1548
Cdd:COG4995    660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
350-609 6.24e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 114.72  E-value: 6.24e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 429
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  430 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 509
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  510 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 588
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1720412881  589 ASAYAALGTAYRMVQKYDKAL 609
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
626-835 8.06e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.70  E-value: 8.06e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  626 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 705
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  706 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 785
Cdd:COG0457     72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720412881  786 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 835
Cdd:COG0457    140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
185-432 3.07e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.07  E-value: 3.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  185 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 264
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  265 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 344
Cdd:COG0457     72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  345 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 424
Cdd:COG0457    146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1720412881  425 IQSEARAL 432
Cdd:COG0457    218 ALAELLLL 225
PHA03377 super family cl31823
EBNA-3C; Provisional
 1884-2268 1.68e-06

EBNA-3C; Provisional


The actual alignment was detected with superfamily member PHA03377:

Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1884 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 1961
Cdd:PHA03377   519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1962 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2040
Cdd:PHA03377   589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2041 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2112
Cdd:PHA03377   655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2113 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2191
Cdd:PHA03377   735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2192 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2264
Cdd:PHA03377   791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                   ....
gi 1720412881 2265 APRP 2268
Cdd:PHA03377   860 PPRL 863
TPR_12 pfam13424
Tetratricopeptide repeat;
109-181 1.50e-05

Tetratricopeptide repeat;


:

Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 1.50e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  109 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 181
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1225-1548 1.51e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.98  E-value: 1.51e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1225 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1304
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1305 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1380
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1381 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1454
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1455 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1533
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1720412881 1534 ----FSHPSNWAGFTLIGS 1548
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
782-1548 2.63e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 149.35  E-value: 2.63e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  782 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 861
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  862 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 941
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  942 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1021
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1022 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1101
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1102 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1181
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1182 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1261
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1262 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1341
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1342 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1420
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1421 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1496
Cdd:COG4995    598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720412881 1497 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1548
Cdd:COG4995    660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
350-609 6.24e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 114.72  E-value: 6.24e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 429
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  430 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 509
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  510 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 588
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1720412881  589 ASAYAALGTAYRMVQKYDKAL 609
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
626-835 8.06e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.70  E-value: 8.06e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  626 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 705
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  706 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 785
Cdd:COG0457     72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720412881  786 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 835
Cdd:COG0457    140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
185-432 3.07e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.07  E-value: 3.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  185 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 264
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  265 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 344
Cdd:COG0457     72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  345 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 424
Cdd:COG0457    146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1720412881  425 IQSEARAL 432
Cdd:COG0457    218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 475-772 5.44e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.18  E-value: 5.44e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  475 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkYLLSLaqsLDNSQAKFRALGN 554
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHG 633
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  634 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYgnmgitkMNMNVMEDAIGYFEQqlaMLQQLSGNESVLDRg 712
Cdd:COG2956    149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlAELY-------LEQGDYEEAIAALER---ALEQDPDYLPALPR- 217

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  713 raygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 772
Cdd:COG2956    218 -----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 119-985 2.86e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 92.07  E-value: 2.86e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  119 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALASHKQCVLL---AKQSKDDLSEArelgnm 195
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLgypKNQVLPLLARA------ 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  196 gavYIAMGDFENAVQCHEqhlriAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELMEKpiemRAYAGL 275
Cdd:TIGR02917  100 ---YLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----SLYAKL 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  276 GHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAygNM 355
Cdd:TIGR02917  164 GLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVLL--AL 233

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  356 GNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLA-VAYQAlGAHDRALQHYQNHLNIARElrdiQSEARALSN 434
Cdd:TIGR02917  234 ATILIEAGEFEEAEKHADALLKKA------PNSPLAHYLKAlVDFQK-KNYEDARETLQDALKSAPE----YLPALLLAG 302

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  435 LGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYC 513
Cdd:TIGR02917  303 ASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALS 367

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  514 NLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAKFRAlgNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLeasaya 593
Cdd:TIGR02917  368 LLGEAYLALGDFEKAAE----YLAKATELDPENAAART--QLGISKLSQGDPSEAIADLETAAQLDPELGRADL------ 435

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  594 ALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY- 672
Cdd:TIGR02917  436 LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANl 505

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  673 GNMGITKMNmnvMEDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKY 734
Cdd:TIGR02917  506 ARIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQ 582

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  735 YEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAIS 813
Cdd:TIGR02917  583 LKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAIT 656

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  814 CLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFER 890
Cdd:TIGR02917  657 SLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQKDYPA 721

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  891 AVVYQEQHLSIAAQmNDLVAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEE 970
Cdd:TIGR02917  722 AIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------AELYL 781

                          890
                   ....*....|....*
gi 1720412881  971 AQHQLYRASALFETI 985
Cdd:TIGR02917  782 AQKDYDKAIKHYQTV 796
TPR_12 pfam13424
Tetratricopeptide repeat;
669-744 1.26e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.26e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  669 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 744
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 680-983 1.95e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.64  E-value: 1.95e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  680 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 759
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  760 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 836
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  837 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 897
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  898 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 977
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305


                   ....*.
gi 1720412881  978 ASALFE 983
Cdd:pfam17874  306 ALSLAE 311
TPR_12 pfam13424
Tetratricopeptide repeat;
350-421 1.62e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.62e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 421
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
192-261 5.43e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 5.43e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  192 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 261
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 351-461 1.12e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  351 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 430
Cdd:PRK02603    37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720412881  431 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 461
Cdd:PRK02603   108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
PHA03377 PHA03377
EBNA-3C; Provisional
 1884-2268 1.68e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1884 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 1961
Cdd:PHA03377   519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1962 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2040
Cdd:PHA03377   589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2041 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2112
Cdd:PHA03377   655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2113 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2191
Cdd:PHA03377   735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2192 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2264
Cdd:PHA03377   791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                   ....
gi 1720412881 2265 APRP 2268
Cdd:PHA03377   860 PPRL 863
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 797-1033 2.56e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 53.00  E-value: 2.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  797 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 865
Cdd:NF040586   439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  866 -DNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLVAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 939
Cdd:NF040586   514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  940 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1016
Cdd:NF040586   590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                          250
                   ....*....|....*..
gi 1720412881 1017 LGHHDEALAVAERGRTR 1033
Cdd:NF040586   660 LGDADEARELAREVLDR 676
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1866-2188 2.73e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1866 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 1943
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1944 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2020
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2021 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2097
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2098 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2177
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734

                          330
                   ....*....|.
gi 1720412881 2178 QSTPQPPRGPR 2188
Cdd:pfam05109  735 ATSPQAPSGQK 745
TPR_12 pfam13424
Tetratricopeptide repeat;
109-181 1.50e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 1.50e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  109 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 181
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 713-737 1.66e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 1.66e-05
                            10        20
                    ....*....|....*....|....*
gi 1720412881   713 RAYGNLGDCYEALGDYEEAIKYYEQ 737
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 470-501 4.37e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.37e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1720412881   470 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 501
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-261 4.63e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.63e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1720412881   229 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 261
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 310-518 5.92e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 5.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  310 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 384
Cdd:NF040586   521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  385 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 459
Cdd:NF040586   601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  460 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 518
Cdd:NF040586   671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 792-825 9.04e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.04e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1720412881   792 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 825
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 843-975 1.54e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  843 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 922
Cdd:PRK02603    46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720412881  923 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 975
Cdd:PRK02603   108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 91-409 1.72e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   91 YMQQDLDVAKTLGDQTGEC-------------RAHGNLGSAFFSKGNYREALTNHRHqlVLAMKLKDREAASS------A 151
Cdd:NF040586   403 YLRGDYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEARELDED--TLERQRRVLGLGEDhphtlmT 480

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  152 LSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDlSEAREL---GNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREE 228
Cdd:NF040586   481 AGGLGADLRALGRFREALELDEETLERHRRVFGE-DHPRTLraaNNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHP 559

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  229 ARaysnLGSAYHYrrnfdkamsyhncvlelaqelmekpieMRAYAGLGHAARCMQDLERAKQYHEQQLGIAedlkDRAAE 308
Cdd:NF040586   560 RT----LLSANNL---------------------------ARDLRELGRYAEALDLLEEALERYREVLGGP----DHPDT 604

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  309 GRASSNLGIIHQMKGDYDTALKLHKthlciaqelSDYAAQGRAYG-----------NMGNAYNALGMYDQAvkyhrqeLQ 377
Cdd:NF040586   605 LRAAKSLAVALRRAGRLEEALELAE---------DTYERYRRRFGpdhpdtlaaalSLANDLRALGDADEA-------RE 668

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1720412881  378 ISMEVNDRASQA------STHG---NLAVAYQALGAHDRAL 409
Cdd:NF040586   669 LAREVLDRYRRVlgedhpFTLAcrnNLAVLLRALGDPEEAR 709
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 713-1041 3.59e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.60  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  713 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RATGSLQQALVCFEKR 778
Cdd:NF040586   435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  779 LVVAHEL-GE--------ASNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 849
Cdd:NF040586   505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  850 TALQY----HQLDLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMndlvakt 912
Cdd:NF040586   580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAAL------- 651

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  913 vsysSLGRTHHALQNYSQAVMYLQEGL-RLAEQLGRRedeakirH--------GLGLSLWASGNLEEAQHQLYRASALFe 983
Cdd:NF040586   652 ----SLANDLRALGDADEARELAREVLdRYRRVLGED-------HpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720412881  984 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1041
Cdd:NF040586   720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 118-220 6.93e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 6.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  118 AFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvllAKQSKDDLSEARElgNMGA 197
Cdd:COG5010     63 LYNKLGDFEESLALLEQ----ALQLDPNNPE--LYYNLALLYSRSGDKDEAKEYYEK----ALALSPDNPNAYS--NLAA 130

                           90       100
                   ....*....|....*....|...
gi 1720412881  198 VYIAMGDFENAVQCHEQHLRIAK 220
Cdd:COG5010    131 LLLSLGQDDEAKAALQRALGTSP 153
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1225-1548 1.51e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.98  E-value: 1.51e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1225 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1304
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1305 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1380
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1381 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1454
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1455 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1533
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 1720412881 1534 ----FSHPSNWAGFTLIGS 1548
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
782-1548 2.63e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 149.35  E-value: 2.63e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  782 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 861
Cdd:COG4995     11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  862 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 941
Cdd:COG4995     91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  942 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1021
Cdd:COG4995    171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1022 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1101
Cdd:COG4995    246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1102 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1181
Cdd:COG4995    326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1182 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1261
Cdd:COG4995    406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1262 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1341
Cdd:COG4995    475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1342 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1420
Cdd:COG4995    540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1421 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1496
Cdd:COG4995    598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                          730       740       750       760       770
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720412881 1497 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1548
Cdd:COG4995    660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
350-609 6.24e-28

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 114.72  E-value: 6.24e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 429
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  430 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLqdmegeGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 509
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  510 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 588
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250       260
                   ....*....|....*....|.
gi 1720412881  589 ASAYAALGTAYRMVQKYDKAL 609
Cdd:COG0457    225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
710-972 1.02e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 108.17  E-value: 1.02e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  710 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 789
Cdd:COG0457      6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  790 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETdnpt 869
Cdd:COG0457     74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  870 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 949
Cdd:COG0457    144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                          250       260
                   ....*....|....*....|...
gi 1720412881  950 DEAKIRHGLGLSLWASGNLEEAQ 972
Cdd:COG0457    222 LLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
626-835 8.06e-23

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.70  E-value: 8.06e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  626 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 705
Cdd:COG0457      5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  706 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 785
Cdd:COG0457     72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720412881  786 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 835
Cdd:COG0457    140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
262-555 1.99e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.54  E-value: 1.99e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  262 LMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQqlgiaedlkdraaegrassnlgiihqmkgdydtALKLHKTHlciaqe 341
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEK---------------------------------ALELDPDD------ 41

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  342 lsdyaaqGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 421
Cdd:COG0457     42 -------AEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  422 LrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 501
Cdd:COG0457    109 D------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALA 176

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  502 LHDKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRALGNL 555
Cdd:COG0457    177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
428-670 3.46e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.16  E-value: 3.46e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  428 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 507
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  508 qAKAYCNLGLAFKALLNFAKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVkdrrl 587
Cdd:COG0457     76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  588 eASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSL 667
Cdd:COG0457    144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220


                   ...
gi 1720412881  668 EAQ 670
Cdd:COG0457    221 ELL 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
588-835 8.01e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.00  E-value: 8.01e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  588 EASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLkepsl 667
Cdd:COG0457      7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  668 eAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 747
Cdd:COG0457     76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  748 mqDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 827
Cdd:COG0457    142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1720412881  828 RALESDAA 835
Cdd:COG0457    218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 351-657 1.33e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 97.11  E-value: 1.33e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  351 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 428
Cdd:COG2956      8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  429 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 508
Cdd:COG2956     76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  509 AKAYCNLGLAFKALLNFAKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlE 588
Cdd:COG2956    144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720412881  589 ASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 657
Cdd:COG2956    212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 589-940 2.58e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 96.34  E-value: 2.58e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  589 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYQEQLELGRklkepsle 668
Cdd:COG2956      8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEYDRAIRIHQKLLERDP-------- 73

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  669 aqvygnmgitkmnmnvmedaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 748
Cdd:COG2956     74 -----------------------------------------DRAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  749 qDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvahELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 828
Cdd:COG2956    108 -DDAEALRLLAEIYEQEGDWEKAIEVLER------LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  829 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETDNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 908
Cdd:COG2956    178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248

                          330       340       350
                   ....*....|....*....|....*....|..
gi 1720412881  909 VAktvsyssLGRTHHALQNYSQAVMYLQEGLR 940
Cdd:COG2956    249 LA-------LADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
185-432 3.07e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 95.07  E-value: 3.07e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  185 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 264
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  265 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 344
Cdd:COG0457     72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  345 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 424
Cdd:COG0457    146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                   ....*...
gi 1720412881  425 IQSEARAL 432
Cdd:COG0457    218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 475-772 5.44e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.18  E-value: 5.44e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  475 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkYLLSLaqsLDNSQAKFRALGN 554
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHG 633
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  634 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYgnmgitkMNMNVMEDAIGYFEQqlaMLQQLSGNESVLDRg 712
Cdd:COG2956    149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlAELY-------LEQGDYEEAIAALER---ALEQDPDYLPALPR- 217

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  713 raygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 772
Cdd:COG2956    218 -----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
151-410 3.43e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 92.38  E-value: 3.43e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  151 ALSSLGHVYTAIGDYPNALASHKQCVLLakqskdDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeAR 230
Cdd:COG0457     10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  231 AYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 310
Cdd:COG0457     78 ALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  311 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 390
Cdd:COG0457    146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225

                          250       260
                   ....*....|....*....|
gi 1720412881  391 THGNLAVAYQALGAHDRALQ 410
Cdd:COG0457    226 ALALLLALRLAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 718-1017 4.47e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.48  E-value: 4.47e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  718 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGE 797
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQKLL------ERDPDRAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  798 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQldlQIAEETDNPTcqgRAYGN 877
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLE---RLLKLGPENA---HAYCE 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  878 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 957
Cdd:COG2956    150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  958 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1017
Cdd:COG2956    218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 395-697 7.51e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.10  E-value: 7.51e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  395 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 474
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  475 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQslDNSQAKFRalgn 554
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 633
Cdd:COG2956    150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  634 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYgnmgitkMNMNVMEDAIGYFEQQLA 697
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
110-368 8.96e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.84  E-value: 8.96e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  110 RAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAasSALSSLGHVYTAIGDYPNALASHKQCVLLakqskdDLSEA 189
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEK----ALELDPDDA--EALYNLGLAYLRLGRYEEALADYEQALEL------DPDDA 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  190 RELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEM 269
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALEL------DPDDA 144

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  270 RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQG 349
Cdd:COG0457    145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                          250
                   ....*....|....*....
gi 1720412881  350 RAYGNMGNAYNALGMYDQA 368
Cdd:COG0457    225 LALALLLALRLAALALYQY 243
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 555-854 2.12e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.56  E-value: 2.12e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSdlpgecRAHGH 634
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  635 LAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQqlamLQQLSGNESvldrgRA 714
Cdd:COG2956     82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENA-----HA 146

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  715 YGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHElgeasnKAQA 794
Cdd:COG2956    147 YCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLPA 214

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  795 YGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 854
Cdd:COG2956    215 LPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-514 3.08e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 94.67  E-value: 3.08e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  246 DKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLG----IAEDLKDRAAEGRASSNLGIIHQM 321
Cdd:COG3914     11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALaageAAAAAAALLLLAALLELAALLLQA 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  322 KGDYDTALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQ 400
Cdd:COG3914     91 LGRYEEAL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALR 157

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  401 ALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHY 480
Cdd:COG3914    158 RLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALR 225

                          250       260       270
                   ....*....|....*....|....*....|....
gi 1720412881  481 CLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCN 514
Cdd:COG3914    226 QACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 119-985 2.86e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 92.07  E-value: 2.86e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  119 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALASHKQCVLL---AKQSKDDLSEArelgnm 195
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLgypKNQVLPLLARA------ 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  196 gavYIAMGDFENAVQCHEqhlriAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELMEKpiemRAYAGL 275
Cdd:TIGR02917  100 ---YLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----SLYAKL 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  276 GHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAygNM 355
Cdd:TIGR02917  164 GLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVLL--AL 233

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  356 GNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLA-VAYQAlGAHDRALQHYQNHLNIARElrdiQSEARALSN 434
Cdd:TIGR02917  234 ATILIEAGEFEEAEKHADALLKKA------PNSPLAHYLKAlVDFQK-KNYEDARETLQDALKSAPE----YLPALLLAG 302

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  435 LGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYC 513
Cdd:TIGR02917  303 ASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALS 367

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  514 NLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAKFRAlgNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLeasaya 593
Cdd:TIGR02917  368 LLGEAYLALGDFEKAAE----YLAKATELDPENAAART--QLGISKLSQGDPSEAIADLETAAQLDPELGRADL------ 435

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  594 ALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY- 672
Cdd:TIGR02917  436 LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANl 505

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  673 GNMGITKMNmnvMEDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKY 734
Cdd:TIGR02917  506 ARIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQ 582

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  735 YEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAIS 813
Cdd:TIGR02917  583 LKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAIT 656

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  814 CLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFER 890
Cdd:TIGR02917  657 SLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQKDYPA 721

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  891 AVVYQEQHLSIAAQmNDLVAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEE 970
Cdd:TIGR02917  722 AIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------AELYL 781

                          890
                   ....*....|....*
gi 1720412881  971 AQHQLYRASALFETI 985
Cdd:TIGR02917  782 AQKDYDKAIKHYQTV 796
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 158-975 6.58e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 90.91  E-value: 6.58e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  158 VYTAIGDYPNALASHKQcvllAKQSKDDLSEARELgnMGAVYIAMGDFENAvqchEQHLRIAKDLGSKREEARAYsnLGS 237
Cdd:TIGR02917   31 SYLQKNKYKAAIIQLKN----ALQKDPNDAEARFL--LGKIYLALGDYAAA----EKELRKALSLGYPKNQVLPL--LAR 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  238 AYHYRRNFDKAMSYHNcvlelAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaegRASSNLGI 317
Cdd:TIGR02917   99 AYLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPR--------SLYAKLGL 165

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  318 --IHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevNDRASQAstHGNL 395
Cdd:TIGR02917  166 aqLALAENRFDEARAL------IDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIAL----RPNNIAV--LLAL 233

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  396 AVAYQALGAHDRALQHYQNHLNIARElrdiQSEARALSNLGNFhcSRGEYVQAAPYYEQYLRLAPDLqdMEGEgkvcHNL 475
Cdd:TIGR02917  234 ATILIEAGEFEEAEKHADALLKKAPN----SPLAHYLKALVDF--QKKNYEDARETLQDALKSAPEY--LPAL----LLA 301

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  476 GYAHYCLGNYQEAVKYYEQDLALAKDLHD-KLSQAKAYCNLGLAFKALLnfakaeecqkyLLSLAQSLDNSQAKFRALgn 554
Cdd:TIGR02917  302 GASEYQLGNLEQAYQYLNQILKYAPNSHQaRRLLASIQLRLGRVDEAIA-----------TLSPALGLDPDDPAALSL-- 368

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQ-------------QLGLSHHVKDRRLEASAY--AALGTAYRMVQ-------------KYD 606
Cdd:TIGR02917  369 LGEAYLALGDFEKAAEYLAKateldpenaaartQLGISKLSQGDPSEAIADleTAAQLDPELGRadlllilsylrsgQFD 448

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  607 KALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY-GNMGITKMNMnvm 685
Cdd:TIGR02917  449 KALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANlARIDIQEGNP--- 515

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  686 EDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKYYEQYLSVAQSLNR 747
Cdd:TIGR02917  516 DDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQLKKALAILNEAAD 595

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  748 MQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMk 826
Cdd:TIGR02917  596 AApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLL------ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDN- 668

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  827 draleSDAACGLGGVYQQMGEYDTALQ-YHQLdlqiaeetdnptcqgraygnlgltyeslgtferavvyQEQHLSiAAQM 905
Cdd:TIGR02917  669 -----TEAQIGLAQLLLAAKRTESAKKiAKSL-------------------------------------QKQHPK-AALG 705

                          810       820       830       840       850       860       870
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  906 NDLvaktvsyssLGRTHHALQNYSQAVMYLQEGLrlaeqlgRREDEAKIRHGLGLSLWASGNLEEAQHQL 975
Cdd:TIGR02917  706 FEL---------EGDLYLRQKDYPAAIQAYRKAL-------KRAPSSQNAIKLHRALLASGNTAEAVKTL 759
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 115-417 1.14e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.55  E-value: 1.14e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  115 LGSAFFSKGNYREALtnhrHQLVLAMKLkDREAASsALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDDLSEARELGN 194
Cdd:COG2956     14 KGLNYLLNGQPDKAI----DLLEEALEL-DPETVE-AHLALGNLYRRRGEYDRAIRIHQK---LLERDPDRAEALLELAQ 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  195 MgavYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAmsyhncvLELAQELME-KPIEMRAYA 273
Cdd:COG2956     85 D---YLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKA-------IEVLERLLKlGPENAHAYC 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  274 GLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYG 353
Cdd:COG2956    149 ELAELYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEAIAALE------RALEQDPDYLPALP 216

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  354 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHGNLAVAYQALGAHDRALQHYQNHLN 417
Cdd:COG2956    217 RLAELYEKLGDPEEALELLRKALE-------LDPSDDLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 227-497 1.25e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.55  E-value: 1.25e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  227 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQElmekpiEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDra 306
Cdd:COG2956     40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-- 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  307 aegrASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDRA 386
Cdd:COG2956    112 ----ALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENAH--AYCELAELYLEQGDYDEAIEA----LEKALKLDPDC 177

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  387 SQASThgNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 466
Cdd:COG2956    178 ARALL--LLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1720412881  467 gegkvchNLGYAHYCLGNYQEAVKYYEQDLA 497
Cdd:COG2956    250 -------ALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 194-457 1.70e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 85.17  E-value: 1.70e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  194 NMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYA 273
Cdd:COG2956     47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELD------PDDAEALR 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  274 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 353
Cdd:COG2956    115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  354 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 433
Cdd:COG2956    183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249

                          250       260
                   ....*....|....*....|....
gi 1720412881  434 NLGNFHCSRGEYVQAAPYYEQYLR 457
Cdd:COG2956    250 ALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 111-377 1.24e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.39  E-value: 1.24e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  111 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVllakQSKDDLSEAR 190
Cdd:COG2956     44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEKLL----ELDPDDAEAL 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  191 ELgnMGAVYIAMGDFENAVQCHEQHLRIAKdlgskrEEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELmeKPIEMR 270
Cdd:COG2956    114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEA----LEKALKL--DPDCAR 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  271 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 350
Cdd:COG2956    180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                          250       260
                   ....*....|....*....|....*..
gi 1720412881  351 aygnmgnAYNALGMYDQAVKYHRQELQ 377
Cdd:COG2956    254 -------LLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
833-1103 1.57e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.51  E-value: 1.57e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  833 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMndlvakT 912
Cdd:COG0457      9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  913 VSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 992
Cdd:COG0457     77 EALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  993 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVL 1072
Cdd:COG0457    137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                          250       260       270
                   ....*....|....*....|....*....|.
gi 1720412881 1073 YYSLAAGYLYSWLLAPGAGILKFHEHYLGDN 1103
Cdd:COG0457    213 ILTLAALAELLLLALALLLALRLAALALYQY 243
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 139-822 2.66e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 82.44  E-value: 2.66e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  139 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAvqchE 213
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL------ALATILIEAGEFEEA----E 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  214 QHLRIAKdlgskreeARAYSNLGSAY-----HYRR-NFDKAMSYHNCVLELAQELMEkpieMRAYAGLGHAARcmQDLER 287
Cdd:TIGR02917  248 KHADALL--------KKAPNSPLAHYlkalvDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQ 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  288 AKQYHEQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQ 367
Cdd:TIGR02917  314 AYQYLNQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEK 381

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  368 AVKY-------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQ 426
Cdd:TIGR02917  382 AAEYlakateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQ 461

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  427 SEARALSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDL 502
Cdd:TIGR02917  462 PDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRA 535

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  503 HDKLSQAKAYCN--------LGLAFKA-------LLNFAKAEECQKYL---LSLAQS-LDNSQAKFRALGNLGDIFICKK 563
Cdd:TIGR02917  536 ILALAGLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAG 615

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  564 DINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALG 643
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAK 683

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  644 KYTMAFKCYQeQLElgrklKEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQ------------QLAMLQQLSGN------ 705
Cdd:TIGR02917  684 RTESAKKIAK-SLQ-----KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavk 757

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  706 --ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghrATGSLQQ----ALVCF 775
Cdd:TIGR02917  758 tlEAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL-----AWLYLELkdprALEYA 826

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*..
gi 1720412881  776 EKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 822
Cdd:TIGR02917  827 ER----ALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
75-329 5.68e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.89  E-value: 5.68e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   75 LSSAHWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 154
Cdd:COG0457     14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  155 LGHVYTAIGDYPNALASHKQcvllAKQSKDDLSEAreLGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSN 234
Cdd:COG0457     82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  235 LGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 314
Cdd:COG0457    150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                          250
                   ....*....|....*
gi 1720412881  315 LGIIHQMKGDYDTAL 329
Cdd:COG0457    230 LLALRLAALALYQYR 244
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 357-574 2.26e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.80  E-value: 2.26e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  357 NAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDiqsEARALSNLG 436
Cdd:COG3914      9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLL---LAALLELAA 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  437 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLG 516
Cdd:COG3914     86 LLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLG 153

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412881  517 LAFKALLNFAKAEECqkYLLSLAQSLDNSQakfrALGNLGDIFICKKDINGAIKFYEQ 574
Cdd:COG3914    154 EALRRLGRLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRR 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 572-739 3.91e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.03  E-value: 3.91e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  572 YEQQLGLSHHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 650
Cdd:COG3914     54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  651 CYQEQLELgrklkEPSLeAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 730
Cdd:COG3914    134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198


                   ....*....
gi 1720412881  731 AIKYYEQYL 739
Cdd:COG3914    199 AIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 584-875 4.48e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.64  E-value: 4.48e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  584 DRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELgrklk 663
Cdd:COG3914     33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL----- 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  664 EPsleaqvygnmgitkmnmnvmedaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAq 743
Cdd:COG3914    108 NP--------------------------------------------DNAEALFNLGNLLLALGRLEEALAALRRALALN- 142

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  744 slnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIAR 823
Cdd:COG3914    143 -----PDFAEAYLNLGEALRRLGRLEEAIAALRR----ALEL--DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  824 DmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPTCQGRAY 875
Cdd:COG3914    212 D------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 395-666 9.26e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.87  E-value: 9.26e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  395 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 474
Cdd:COG3914      4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  475 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFAKAEECqkYLLSLAQSLDNSQakfrALGN 554
Cdd:COG3914     84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 633
Cdd:COG3914    152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218

                          250       260       270
                   ....*....|....*....|....*....|...
gi 1720412881  634 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPS 666
Cdd:COG3914    219 NLLFALRQACDWEVYDRFEELLAALARGPSELS 251
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-336 1.58e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 70.14  E-value: 1.58e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   38 GQELLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAHWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGS 117
Cdd:COG2956     15 GLNYLLNGQPDKAIDLLEEALELDPETVEAH----LALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLELAQ 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  118 AFFSKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDDlseARELGNMGA 197
Cdd:COG2956     85 DYLKAGLLDRAEE------LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER---LLKLGPEN---AHAYCELAE 152

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  198 VYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAmsyhncvLELAQELMEK-PIEMRAYAGLG 276
Cdd:COG2956    153 LYLEQGDYDEAIEALEKALKLDPDC------ARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALPRLA 219

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  277 HAARCMQDLERAKQYHEQQLGIAEDLKDRAAegrassnLGIIHQMKGDYDTALKLHKTHL 336
Cdd:COG2956    220 ELYEKLGDPEEALELLRKALELDPSDDLLLA-------LADLLERKEGLEAALALLERQL 272
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 589-740 1.22e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 64.44  E-value: 1.22e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  589 ASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepsl 667
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------ 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  668 EAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 740
Cdd:COG4783     71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 339-501 7.63e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 7.63e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  339 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 418
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  419 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 498
Cdd:COG4783     64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                   ...
gi 1720412881  499 AKD 501
Cdd:COG4783    136 DPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
669-744 1.26e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.26e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  669 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 744
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 718-864 1.49e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.36  E-value: 1.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  718 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGE 797
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHE----ALEL--DPDEPEARLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  798 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 864
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 339-500 1.49e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.90  E-value: 1.49e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  339 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 418
Cdd:COG5010      4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  419 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 498
Cdd:COG5010     84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151


                   ..
gi 1720412881  499 AK 500
Cdd:COG5010    152 SP 153
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 680-983 1.95e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.64  E-value: 1.95e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  680 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 759
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  760 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 836
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  837 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 897
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  898 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 977
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305


                   ....*.
gi 1720412881  978 ASALFE 983
Cdd:pfam17874  306 ALSLAE 311
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 710-832 3.35e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 3.35e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  710 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHelgeas 789
Cdd:COG4235     15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1720412881  790 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 832
Cdd:COG4235     83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
398-504 7.64e-10

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.87  E-value: 7.64e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  398 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 477
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1720412881  478 AHYCLGNYQEAVKYYEQDLALAKDLHD 504
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 306-461 8.95e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 8.95e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  306 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 385
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  386 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 461
Cdd:COG4783     71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
640-1090 9.21e-10

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 64.49  E-value: 9.21e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  640 MALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQQL-AMLQQLSGNESVLDR---GRAY 715
Cdd:COG3899    716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALaARALAALAALRHGNPpasARAY 795

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  716 GNLGDCYeaLGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGEASNKAQAY 795
Cdd:COG3899    796 ANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLAL 873

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  796 GELGSLHSQLGNYEQAISCLERQLNIARDM------KDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT 869
Cdd:COG3899    874 AAAAAAAAAAAALAAAAAAAARLLAAAAAAlaaaaaAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  870 CQGRAYGNLGLTYESLgTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 949
Cdd:COG3899    954 LAAALALAAAAAAAAA-AALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  950 DEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHDEALAVAER 1029
Cdd:COG3899   1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720412881 1030 GRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGA 1090
Cdd:COG3899   1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAA 1173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 782-981 1.25e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.47  E-value: 1.25e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  782 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 861
Cdd:COG3914     28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  862 aeetdNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLvaktvsYSSLGRTHHALQNYSQAVMYLQEGLRL 941
Cdd:COG3914    108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA------YLNLGEALRRLGRLEEAIAALRRALEL 175

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 1720412881  942 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 981
Cdd:COG3914    176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
350-421 1.62e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.62e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 421
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 384-530 2.15e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 58.43  E-value: 2.15e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  384 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 463
Cdd:COG5010      9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  464 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEE 530
Cdd:COG5010     87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
TPR_12 pfam13424
Tetratricopeptide repeat;
792-864 2.46e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.86  E-value: 2.46e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  792 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 864
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
397-981 2.51e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 62.95  E-value: 2.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  397 VAYQALGAHDRALQHYQ---------------------NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQY 455
Cdd:COG3899    655 AAYASLPPEERRALHRRiaraleargpepleerlfelaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERA 731

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  456 LRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFAKA 528
Cdd:COG3899    732 LELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEA 809

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  529 EECQKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLEASAYAALGTAYRMVQkyDKA 608
Cdd:COG3899    810 YEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAA--ALA 887

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  609 LGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQvygnmgitkmnmnvmEDA 688
Cdd:COG3899    888 AAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA---------------AAA 952

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  689 IGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSL 768
Cdd:COG3899    953 ALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  769 QQALVCFEKRLVVAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEY 848
Cdd:COG3899   1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  849 DTALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNY 928
Cdd:COG3899   1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAA 1191

                          570       580       590       600       610
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  929 SQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 981
Cdd:COG3899   1192 AAALLAALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 86-335 2.84e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.32  E-value: 2.84e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   86 EKSTGYMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAmklkdrEAASSALSSLGHVYTAIGDY 165
Cdd:COG3914     55 AAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALN------PDNAEALFNLGNLLLALGRL 128

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  166 PNALASHKQCVLLakqsKDDLSEAreLGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNF 245
Cdd:COG3914    129 EEALAALRRALAL----NPDFAEA--YLNLGEALRRLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRL 196

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  246 DKAMSYHNCVLELAQELmekpiemraYAGLGHAARCMQDLERAKQYHEQQlgiaEDLKDRAAEGRASSNLGIIHQMKGDY 325
Cdd:COG3914    197 EEAIAAYRRALELDPDN---------ADAHSNLLFALRQACDWEVYDRFE----ELLAALARGPSELSPFALLYLPDDDP 263

                          250
                   ....*....|
gi 1720412881  326 DTALKLHKTH 335
Cdd:COG3914    264 AELLALARAW 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 789-942 3.32e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 3.32e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  789 SNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETDN 867
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDE 71

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  868 PtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLvaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 942
Cdd:COG4783     72 P----EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
TPR_12 pfam13424
Tetratricopeptide repeat;
192-261 5.43e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 5.43e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  192 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 261
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
358-464 5.86e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 55.18  E-value: 5.86e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  358 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 437
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1720412881  438 FHCSRGEYVQAAPYYEQYLRLAPDLQD 464
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
387-461 6.29e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 6.29e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  387 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 461
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
201-459 9.45e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 61.03  E-value: 9.45e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  201 AMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLEL-------AQELMEKPIEMRAYA 273
Cdd:COG3899    717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYA 796

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  274 GLGHAARcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 353
Cdd:COG3899    797 NLGLLLL--GDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  354 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 433
Cdd:COG3899    875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                          250       260
                   ....*....|....*....|....*.
gi 1720412881  434 NLGNFHCSRGEYVQAAPYYEQYLRLA 459
Cdd:COG3899    954 LAAALALAAAAAAAAAAALAAAAAAA 979
COG3899 COG3899
Predicted ATPase [General function prediction only];
215-509 1.51e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 60.26  E-value: 1.51e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  215 HLRIAKDlgskREEARAYsNLGSAYHYRRN--FDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYH 292
Cdd:COG3899    694 HLNRAGE----RDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALL 768

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  293 EQQLGI-------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMY 365
Cdd:COG3899    769 ERALAAralaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPL 846

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  366 DQAVKYHRQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFH 439
Cdd:COG3899    847 REALELLREALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAA 926

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  440 CSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 509
Cdd:COG3899    927 AAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 144-420 1.77e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.01  E-value: 1.77e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  144 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDlg 223
Cdd:COG3914     33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-- 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  224 skreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEkpiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLk 303
Cdd:COG3914    111 ----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALELDPDN- 179

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  304 draAEgrASSNLGIIHQMKGDYDTALKlhktHLCIAQELSdyAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevn 383
Cdd:COG3914    180 ---AE--ALNNLGNALQDLGRLEEAIA----AYRRALELD--PDNADAHSNLLFALRQACDWEVYDRFEELLAAL----- 243

                          250       260       270
                   ....*....|....*....|....*....|....*..
gi 1720412881  384 drASQASTHGNLAVAYQalgAHDRALQHYQNHLNIAR 420
Cdd:COG3914    244 --ARGPSELSPFALLYL---PDDDPAELLALARAWAQ 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 227-381 1.81e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 55.20  E-value: 1.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  227 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 305
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEALLEKALELD------PDNPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  306 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 381
Cdd:COG4783     69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
148-221 2.05e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 2.05e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  148 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 221
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
721-824 2.12e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.64  E-value: 2.12e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  721 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRATGSLQQALVcFEKrlvvAHELgeASNKAQAYGELGS 800
Cdd:COG3063      1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....
gi 1720412881  801 LHSQLGNYEQAISCLERQLNIARD 824
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 669-825 2.29e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 2.29e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  669 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 748
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  749 qDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 825
Cdd:COG4783     70 -DEPEARLNLGLALLKAGDYDEALALLEKAL------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 792-1029 3.59e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.85  E-value: 3.59e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  792 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETDNPTCQ 871
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  872 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDlvaktvSYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 951
Cdd:COG3914     78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNP------DF 145

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720412881  952 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1029
Cdd:COG3914    146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 620-742 8.04e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 8.04e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  620 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVMEDAIGYFEQqlaML 699
Cdd:COG4235      8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1720412881  700 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 742
Cdd:COG4235     79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_12 pfam13424
Tetratricopeptide repeat;
710-824 8.31e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 8.31e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  710 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLnrmqdqakayrgLGNGHRATgslqqalvcfekrlvvahelgeas 789
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRL------------LGPDHPLT------------------------ 44

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 1720412881  790 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 824
Cdd:pfam13424   45 --ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
310-378 8.64e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 8.64e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720412881  310 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 378
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 349-461 9.11e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.09  E-value: 9.11e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  349 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 428
Cdd:COG4235     17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1720412881  429 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 461
Cdd:COG4235     85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 580-739 1.07e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 1.07e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  580 HHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELG 659
Cdd:COG5010      5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  660 RKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYL 739
Cdd:COG5010     85 PN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 507-658 1.21e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 1.21e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  507 SQAKAYCNLGLAFKALLNFAKAEEcqkyllSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHvkdrr 586
Cdd:COG4783      2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  587 lEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYQEQLEL 658
Cdd:COG4783     71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 635-779 1.81e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 1.81e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  635 LAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRA 714
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  715 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 779
Cdd:COG4783     75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 367-499 2.24e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.93  E-value: 2.24e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  367 QAVKYHRQELQismevnDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYV 446
Cdd:COG4235      1 EAIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  447 QAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA 499
Cdd:COG4235     69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 475-621 3.88e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 3.88e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  475 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkyllSLAQSLDNSQAKFRALGN 554
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  555 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 621
Cdd:COG4783     78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
364-598 3.93e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.38  E-value: 3.93e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  364 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 436
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  437 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 516
Cdd:COG4785     81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  517 LAFKALLNFAKAEEcqkyLLSLAQSLDNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLEASAYAALG 596
Cdd:COG4785    149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221


                   ..
gi 1720412881  597 TA 598
Cdd:COG4785    222 LA 223
COG3899 COG3899
Predicted ATPase [General function prediction only];
125-459 5.18e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 55.25  E-value: 5.18e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  125 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYiaMGD 204
Cdd:COG3899    728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  205 FENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQD 284
Cdd:COG3899    806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  285 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 358
Cdd:COG3899    886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  359 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 438
Cdd:COG3899    966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044

                          330       340
                   ....*....|....*....|.
gi 1720412881  439 HCSRGEYVQAAPYYEQYLRLA 459
Cdd:COG3899   1045 LLAALAAAAAAAAAAAALAAA 1065
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 416-579 6.55e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 6.55e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  416 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 495
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  496 LALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 575
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1720412881  576 LGLS 579
Cdd:COG5010    149 LGTS 152
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 136-299 7.71e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.11  E-value: 7.71e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  136 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQH 215
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  216 LRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELmeKPIEMRAYAGLGHAARCMQDLERAKQYHEQQ 295
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1720412881  296 LGIA 299
Cdd:COG5010    149 LGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
801-903 9.25e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 49.01  E-value: 9.25e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  801 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETDNPtcqgRAYGNLGL 880
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67

                           90       100
                   ....*....|....*....|...
gi 1720412881  881 TYESLGTFERAVVYQEQHLSIAA 903
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDP 90
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 351-461 1.12e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.12e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  351 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 430
Cdd:PRK02603    37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720412881  431 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 461
Cdd:PRK02603   108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
TPR_12 pfam13424
Tetratricopeptide repeat;
834-904 1.15e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.15e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  834 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 904
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
638-747 1.28e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 1.28e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  638 VYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 717
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64

                           90       100       110
                   ....*....|....*....|....*....|
gi 1720412881  718 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 747
Cdd:COG3063     65 LAELLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
914-983 1.61e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 1.61e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  914 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 983
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
PHA03377 PHA03377
EBNA-3C; Provisional
 1884-2268 1.68e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.68e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1884 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 1961
Cdd:PHA03377   519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1962 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2040
Cdd:PHA03377   589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2041 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2112
Cdd:PHA03377   655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2113 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2191
Cdd:PHA03377   735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2192 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2264
Cdd:PHA03377   791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                   ....
gi 1720412881 2265 APRP 2268
Cdd:PHA03377   860 PPRL 863
TPR_7 pfam13176
Tetratricopeptide repeat;
472-505 1.82e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.82e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720412881  472 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 505
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TPR_12 pfam13424
Tetratricopeptide repeat;
227-301 2.22e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.38  E-value: 2.22e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  227 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELM--EKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 301
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 256-419 2.29e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.57  E-value: 2.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  256 LELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 335
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  336 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 415
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                   ....
gi 1720412881  416 LNIA 419
Cdd:COG5010    149 LGTS 152
TPR_7 pfam13176
Tetratricopeptide repeat;
794-829 2.44e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.99  E-value: 2.44e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1720412881  794 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 829
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 797-1033 2.56e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 53.00  E-value: 2.56e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  797 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 865
Cdd:NF040586   439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  866 -DNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLVAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 939
Cdd:NF040586   514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  940 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1016
Cdd:NF040586   590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                          250
                   ....*....|....*..
gi 1720412881 1017 LGHHDEALAVAERGRTR 1033
Cdd:NF040586   660 LGDADEARELAREVLDR 676
TPR_12 pfam13424
Tetratricopeptide repeat;
473-541 2.58e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 2.58e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720412881  473 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQS 541
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1866-2188 2.73e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.73e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1866 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 1943
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1944 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2020
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2021 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2097
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2098 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2177
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734

                          330
                   ....*....|.
gi 1720412881 2178 QSTPQPPRGPR 2188
Cdd:pfam05109  735 ATSPQAPSGQK 745
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
441-542 2.87e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 2.87e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  441 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 520
Cdd:COG3063      4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70

                           90       100
                   ....*....|....*....|..
gi 1720412881  521 ALLNFAKAEECQKYLLSLAQSL 542
Cdd:COG3063     71 ELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
318-424 2.87e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 2.87e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  318 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 397
Cdd:COG3063      1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1720412881  398 AYQALGAHDRALQHYQNHLNIARELRD 424
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1868-2203 3.19e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 3.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1868 RATLPRRQTSPQARRGASKEEEEYEGFSII---SMEPLATYQGEGKTRFSPDPKQPCVKAPGGvrlSVSSKGSVSTPNSP 1944
Cdd:PHA03307    50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEApanESRSTPTWSLSTLAPASPAREGSPTPPGPS---SPDPPPPTPPPASP 126

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1945 VkmtliPSPNSPFQKVGKLASSDTGESDQSSTETDStVKSQEESTPKLDPQ-ELAQRILEET--------KSHLLAVERL 2015
Cdd:PHA03307   127 P-----PSPAPDLSEMLRPVGSPGPPPAASPPAAGA-SPAAVASDAASSRQaALPLSSPEETarapssppAEPPPSTPPA 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2016 QRSGGPAGPDREDSVVAPSST------TVFRASETSAFSKPILShQRSQLSPLTVKPQPPARSSSLPKVS-SPATSEVSG 2088
Cdd:PHA03307   201 AASPRPPRRSSPISASASSPApapgrsAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIwEASGWNGPS 279

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2089 KDGLSPPGSSHPSPGRDTPVS------PADPPLFRLKYPSSPYSAHISKSPR--NTSPACSAPSPALSYSSAGSARSSPA 2160
Cdd:PHA03307   280 SRPGPASSSSSPRERSPSPSPsspgsgPAPSSPRASSSSSSSRESSSSSTSSssESSRGAAVSPGPSPSRSPSPSRPPPP 359

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|...
gi 1720412881 2161 DAPDEKVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRD 2203
Cdd:PHA03307   360 ADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRD 402
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
198-302 3.19e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  198 VYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvlELAQELmeKPIEMRAYAGLGH 277
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-----EKALKL--DPNNAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*
gi 1720412881  278 AARCMQDLERAKQYHEQQLGIAEDL 302
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSA 92
TPR_7 pfam13176
Tetratricopeptide repeat;
714-746 3.44e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.61  E-value: 3.44e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720412881  714 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 746
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 146-301 4.38e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 4.38e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  146 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkddlSEARELgnMGAVYIAMGDFENAVQCHEQHLRIAKDlgsk 225
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  226 reEARAYSNLGSAYHYRRNFDKAMSYhncvleLAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 301
Cdd:COG4783     71 --EPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TPR_1 pfam00515
Tetratricopeptide repeat;
713-744 5.01e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 45.10  E-value: 5.01e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720412881  713 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 744
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
801-1025 5.44e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 5.44e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  801 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD--NPTcQGRAYGNL 878
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlaLPD-LAQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  879 GLTYESLGTFERAVvyqeQHLSIAAQMNDLVAKTvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGL 958
Cdd:COG4785     80 GVAYDSLGDYDLAI----ADFDQALELDPDLAEA--YNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  959 GLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1025
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
TPR_12 pfam13424
Tetratricopeptide repeat;
269-341 6.34e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 46.23  E-value: 6.34e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  269 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 341
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_8 pfam13181
Tetratricopeptide repeat;
713-744 7.85e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 44.31  E-value: 7.85e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720412881  713 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 744
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
790-892 8.46e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 8.46e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  790 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQyhqlDLQIAEETDnPT 869
Cdd:COG4785     71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALE----DFDRALELD-PD 139

                           90       100
                   ....*....|....*....|...
gi 1720412881  870 cQGRAYGNLGLTYESLGTFERAV 892
Cdd:COG4785    140 -YAYAYLNRGIALYYLGRYELAI 161
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 785-902 9.05e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.03  E-value: 9.05e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  785 LGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEe 864
Cdd:COG5010     47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP- 119

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1720412881  865 tDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 902
Cdd:COG5010    120 -DNP----NAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
873-944 9.95e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 9.95e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  873 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 944
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 770-902 1.06e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.92  E-value: 1.06e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  770 QALVCFEKRLVvahelgEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYD 849
Cdd:COG4235      1 EAIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  850 TALQYhqLDLQIAEETDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 902
Cdd:COG4235     69 EAEEL--LERALALDPDNP----EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 496-658 1.32e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  496 LALAKDLHDKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 575
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  576 LGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYQEQ 655
Cdd:COG5010     81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                   ...
gi 1720412881  656 LEL 658
Cdd:COG5010    149 LGT 151
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 686-795 1.40e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 1.40e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  686 EDAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAT 765
Cdd:COG1729     10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80

                           90       100       110
                   ....*....|....*....|....*....|
gi 1720412881  766 GSLQQALVCFEKrLVVAHELGEASNKAQAY 795
Cdd:COG1729     81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
286-518 1.50e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.37  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  286 ERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAaqgRAYGNMGNAYNALGMY 365
Cdd:COG4785     17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDR----ALALPDLA---QLYYERGVAYDSLGDY 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  366 DQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYqnhlNIARELRDiqSEARALSNLGNFHCSRGEY 445
Cdd:COG4785     90 DLAIADFDQALEL------DPDLAEAYNNRGLAYLLLGDYDAALEDF----DRALELDP--DYAYAYLNRGIALYYLGRY 157

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  446 VQAAPYYEQYLRLAPDLQDMegegkvcHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLA 518
Cdd:COG4785    158 ELAIADLEKALELDPNDPER-------ALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
TPR_12 pfam13424
Tetratricopeptide repeat;
109-181 1.50e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 1.50e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  109 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 181
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 194-307 1.56e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 1.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  194 NMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYA 273
Cdd:COG4235     22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALD------PDNPEALY 89

                           90       100       110
                   ....*....|....*....|....*....|....
gi 1720412881  274 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 307
Cdd:COG4235     90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 713-737 1.66e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 1.66e-05
                            10        20
                    ....*....|....*....|....*
gi 1720412881   713 RAYGNLGDCYEALGDYEEAIKYYEQ 737
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR_12 pfam13424
Tetratricopeptide repeat;
589-661 1.81e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 1.81e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  589 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRK 661
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 447-576 2.00e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  447 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFA 526
Cdd:COG4235      1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720412881  527 KAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFICKKDINGAIKFYEQQL 576
Cdd:COG4235     69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLL 112
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 708-862 2.09e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 2.09e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  708 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELge 787
Cdd:COG5010     10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQL-- 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881  788 ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 862
Cdd:COG5010     84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
841-945 2.18e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 2.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  841 VYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLVAktvsYSSLGR 920
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67

                           90       100
                   ....*....|....*....|....*
gi 1720412881  921 THHALQNYSQAVMYLQEGLRLAEQL 945
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
482-579 2.25e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.16  E-value: 2.25e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  482 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEECQKyllslAQSLDNSQAkfRALGNLGDIFIC 561
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71

                           90
                   ....*....|....*...
gi 1720412881  562 KKDINGAIKFYEQQLGLS 579
Cdd:COG3063     72 LGDYDEALAYLERALELD 89
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1901-2200 2.36e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 2.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1901 PLATYQGEGKTRFSPDPKQPCVKA----PGGVRLSVSSKGSVSTPNSPvKMTLIPSPNSPfqkvgKLASSDTGESDQSST 1976
Cdd:PHA03247  2561 PAAPDRSVPPPRPAPRPSEPAVTSrarrPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1977 ETDSTVKSQEESTPKLDPQELAqrileetkshllAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAfsKPILSHQR 2056
Cdd:PHA03247  2635 ANEPDPHPPPTVPPPERPRDDP------------APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV--GSLTSLAD 2700

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2057 SQLSPLTVKPQPPARSSSLPKVSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPlfRLKYPSSPYSAHISKSPRNT 2136
Cdd:PHA03247  2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA--RPPTTAGPPAPAPPAAPAAG 2778

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720412881 2137 SPACSAPSPALSYSSAGSARSSPADAPDEKVQAVHSLKML-WQSTPQPPRGPRKTCRGAPGTLTS 2200
Cdd:PHA03247  2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALpPAASPAGPLPPPTSAQPTAPPPPP 2843
TPR_7 pfam13176
Tetratricopeptide repeat;
431-466 3.07e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.91  E-value: 3.07e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1720412881  431 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 466
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1866-2271 3.36e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 3.36e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1866 PQRATLPRRQTSPQARRGASKEEEEYEGFSI-ISMEPLATYQGEGKTRFSPDPKqPCVKAPGGVRLSVSSKGSVSTPNSP 1944
Cdd:PHA03247  2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAArPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALP 2736

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1945 VKMTLIPSPNSPfqkvgklaSSDTGESDQSSTETDSTVKSqeeSTPKLDPQELAQRILEETKSHLLAVerlQRSGGPAGP 2024
Cdd:PHA03247  2737 AAPAPPAVPAGP--------ATPGGPARPARPPTTAGPPA---PAPPAAPAAGPPRRLTRPAVASLSE---SRESLPSPW 2802

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2025 DRED--SVVAPSSTTVFRASETSAFSKPilshqrsqlsPLTVKPQPPARSSSLPKVSSPATSEVSgkDGLSPPGSSHPSP 2102
Cdd:PHA03247  2803 DPADppAAVLAPAAALPPAASPAGPLPP----------PTSAQPTAPPPPPGPPPPSLPLGGSVA--PGGDVRRRPPSRS 2870

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2103 GRDTPVSPADPPLFRLKYPSSPYSAHISKSPRNTSPACSAPSPAlsyssagsarSSPADAPDEKVQAvhslkmlwQSTPQ 2182
Cdd:PHA03247  2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP----------PPPQPQPQPPPPP--------QPQPP 2932

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2183 PPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGKEEGG---ADRLELKELSVQRHDEVPPKVPTNGHWCTDTATLTTAGG 2259
Cdd:PHA03247  2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGrvaVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012

                          410
                   ....*....|..
gi 1720412881 2260 RSTTAAPRPLRL 2271
Cdd:PHA03247  3013 LHEETDPPPVSL 3024
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
562-662 3.56e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.39  E-value: 3.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  562 KKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 641
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71

                           90       100
                   ....*....|....*....|.
gi 1720412881  642 LGKYTMAFKCYQEQLELGRKL 662
Cdd:COG3063     72 LGDYDEALAYLERALELDPSA 92
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
710-860 3.69e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.22  E-value: 3.69e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  710 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 789
Cdd:COG4785     71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAALEDFDR----ALEL--DP 138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  790 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL-------ESDAACGL-------GGVYQQMGEYDTALQYH 855
Cdd:COG4785    139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALwlylaerKLDPEKALallledwATAYLLQGDTEEARELF 218


                   ....*
gi 1720412881  856 QLDLQ 860
Cdd:COG4785    219 KLALA 223
TPR_12 pfam13424
Tetratricopeptide repeat;
550-621 4.12e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.92  E-value: 4.12e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  550 RALGNLGDIFICKKDINGAIKFYEQQLGLSHHV--KDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 621
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
COG3899 COG3899
Predicted ATPase [General function prediction only];
780-1167 5.04e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.70  E-value: 5.04e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  780 VVAHELGEASNKAQAYGEL---GSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhq 856
Cdd:COG3899    690 ELAHHLNRAGERDRAARLLlraARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL-- 767

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  857 ldlqiaeetdnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHhaLQNYSQAVMYLQ 936
Cdd:COG3899    768 -------------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGE 814

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  937 EGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1016
Cdd:COG3899    815 LALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAA 894

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1017 LGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFH 1096
Cdd:COG3899    895 RLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAA 974

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1720412881 1097 EHYLGDNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEE 1167
Cdd:COG3899    975 AAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALAL 1045
TPR_7 pfam13176
Tetratricopeptide repeat;
192-225 5.16e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.14  E-value: 5.16e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720412881  192 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSK 225
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
PHA03378 PHA03378
EBNA-3B; Provisional
 1945-2268 6.71e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 48.52  E-value: 6.71e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1945 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESTPKLDPQELaQRILEETKSHLlaverlqRSGG 2020
Cdd:PHA03378   520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQL-------ASSA 589

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2021 PAGPDREDSVVAPSS-----TTVFRASETSA----------------------FSKPILS--HQRSQLSPLTVK------ 2065
Cdd:PHA03378   590 PSYAQTPWPVPHPSQtpeppTTQSHIPETSAprqwpmplrpipmrplrmqpitFNVLVFPtpHQPPQVEITPYKptwtqi 669

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2066 ------PQPPARSSSLPKVSSPATSEVSGKdglsppgsshpspgRDTPVSPADPPLFRLKYPSSPYSAH--ISKSPRNTS 2137
Cdd:PHA03378   670 ghipyqPSPTGANTMLPIQWAPGTMQPPPR--------------APTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRAR 735

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2138 PACSAPSPALSYSSAGSARSSPADAPDE-KVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGK 2216
Cdd:PHA03378   736 PPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|..
gi 1720412881 2217 EEGGADRLELKELSVQRHDEVPPkvptnghwctdTATLTTAGGRSTTAAPRP 2268
Cdd:PHA03378   816 GQQGPTKQILRQLLTGGVKRGRP-----------SLKKPAALERQAAAGPTP 856
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 686-772 9.41e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 9.41e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  686 EDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA-QSLNRMQDQAKAYRGLGNGHRA 764
Cdd:COG5010     71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEA 141


                   ....*...
gi 1720412881  765 TGSLQQAL 772
Cdd:COG5010    142 KAALQRAL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
282-379 1.29e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.29e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  282 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 361
Cdd:COG3063      5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71

                           90
                   ....*....|....*...
gi 1720412881  362 LGMYDQAVKYHRQELQIS 379
Cdd:COG3063     72 LGDYDEALAYLERALELD 89
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 151-251 1.48e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.84  E-value: 1.48e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  151 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEAR 230
Cdd:COG4235     19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL------DLAEALLAAGDTEEAEELLERALALDPD------NPE 86

                           90       100
                   ....*....|....*....|.
gi 1720412881  231 AYSNLGSAYHYRRNFDKAMSY 251
Cdd:COG4235     87 ALYLLGLAAFQQGDYAEAIAA 107
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
710-779 1.49e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 1.49e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  710 DRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 779
Cdd:COG3063     24 DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 851-1030 1.63e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 1.63e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  851 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAktvsYSSLGRTHHALQNYSQ 930
Cdd:COG3914     21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  931 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1010
Cdd:COG3914     97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152

                          170       180
                   ....*....|....*....|
gi 1720412881 1011 QRVLVSLGHHDEALAVAERG 1030
Cdd:COG3914    153 GEALRRLGRLEEAIAALRRA 172
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 470-501 1.73e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 1.73e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720412881  470 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 501
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 1898-2274 1.86e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 47.07  E-value: 1.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1898 SMEPLATyqGEGKTRFSPD----PKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTL------IPSPNSPFQKVGKLASSD 1967
Cdd:pfam03154   13 SMSTLRS--GRKKQTASPDgrasPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSkkikeeAPSPLKSAKRQREKGASD 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1968 TGESDQSSTETDstvKSQEESTPKlDPQE------LAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRA 2041
Cdd:pfam03154   91 TEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQI 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2042 SETSafsKPILSHQrsqlSPLTVKPQPPARSSSLPKVSSPATSEVSgkdglsppgsshpspGRDTPVSPADPPLFRLKYP 2121
Cdd:pfam03154  167 LQTQ---PPVLQAQ----SGAASPPSPPPPGTTQAATAGPTPSAPS---------------VPPQGSPATSQPPNQTQST 224

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2122 SSPYSAhISKSPRNTSPACSAPSPALsyssagsaRSSPADAPDEKVQAvhslkmlwQSTPQPP-RGPrktcrGAPGTLTs 2200
Cdd:pfam03154  225 AAPHTL-IQQTPTLHPQRLPSPHPPL--------QPMTQPPPPSQVSP--------QPLPQPSlHGQ-----MPPMPHS- 281

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881 2201 krdvlslLNLSPRHGKEEGGADRLELKELSVQRHDEVPPKVPTNGHwctDTATLTTAGGRSTTAAPRPLR---LPLA 2274
Cdd:pfam03154  282 -------LQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQ---SQQRIHTPPSQSQLQSQQPPReqpLPPA 348
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 726-817 2.07e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 2.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  726 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRATGSLQQALVCFEKrlvVAHELGEASNKAQAYGELGSLHSQL 805
Cdd:COG1729      7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80

                           90
                   ....*....|..
gi 1720412881  806 GNYEQAISCLER 817
Cdd:COG1729     81 GDYDKARATLEE 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
158-264 2.34e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.34e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  158 VYTAIGDYPNALASHKQCVLLAKqskdDLSEAreLGNMGAVYIAMGDFENAVQChEQHLRIAKDlgskreEARAYSNLGS 237
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDP----DNADA--LNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                           90       100
                   ....*....|....*....|....*..
gi 1720412881  238 AYHYRRNFDKAMSYHNCVLELAQELME 264
Cdd:COG3063     68 LLLELGDYDEALAYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 208-331 2.52e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 2.52e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  208 AVQCHEQHLRiakdlgSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEkpiemrAYAGLGHAARCMQDLER 287
Cdd:COG4235      2 AIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEE 69

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 1720412881  288 AKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKL 331
Cdd:COG4235     70 AEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
TPR_7 pfam13176
Tetratricopeptide repeat;
351-386 3.09e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.83  E-value: 3.09e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 1720412881  351 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 386
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 713-740 3.54e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.81  E-value: 3.54e-04
                           10        20
                   ....*....|....*....|....*...
gi 1720412881  713 RAYGNLGDCYEALGDYEEAIKYYEQYLS 740
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
TPR_8 pfam13181
Tetratricopeptide repeat;
792-824 3.94e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.69  E-value: 3.94e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720412881  792 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 824
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 470-501 4.37e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.37e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1720412881   470 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 501
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 229-261 4.63e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.63e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1720412881   229 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 261
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 686-822 5.10e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.64  E-value: 5.10e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  686 EDAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAT 765
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720412881  766 GSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 822
Cdd:COG5010    102 GDKDEAKEYYEK----ALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
196-333 5.85e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.75  E-value: 5.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  196 GAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEMRAYAGL 275
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720412881  276 GHA-------ARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 333
Cdd:COG4785    148 GIAlyylgryELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 310-518 5.92e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 45.29  E-value: 5.92e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  310 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 384
Cdd:NF040586   521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  385 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 459
Cdd:NF040586   601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  460 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 518
Cdd:NF040586   671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2018-2290 8.15e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 8.15e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2018 SGGPAGPDREDSVVAPSST--TVFRASETSafskPILSHQRSQLSPLTVKPQP--PARSSSLPKVSSPaTSEVSgkdgLS 2093
Cdd:pfam05109  446 TGLPSSTHVPTNLTAPASTgpTVSTADVTS----PTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSP-TSAVT----TP 516

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2094 PPGSSHPSPGRDTPVSPADPPLFRLKYPSS----PYSAHISKSPRNTSPACSAPSPALSYSSAGSARSSP---ADAP--- 2163
Cdd:pfam05109  517 TPNATSPTPAVTTPTPNATSPTLGKTSPTSavttPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPtvg 596

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2164 DEKVQAVHSLKML--WQSTP---QPPRGPRKTCRGAPGTLTSKRDvlSLLNLSPRHGKEEGGAdrlELKELSVQRHDEVP 2238
Cdd:pfam05109  597 ETSPQANTTNHTLggTSSTPvvtSPPKNATSAVTTGQHNITSSST--SSMSLRPSSISETLSP---STSDNSTSHMPLLT 671

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720412881 2239 PKVPTNGHWCTDTATLTTAGGRSTTA--APRPLRLPLANGykflsPGRLFPSSK 2290
Cdd:pfam05109  672 SAHPTGGENITQVTPASTSTHHVSTSspAPRPGTTSQASG-----PGNSSTSTK 720
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-978 8.19e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 8.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  851 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktvsYSSLGRTHHALQNYSQ 930
Cdd:COG5010     33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1720412881  931 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 978
Cdd:COG5010    107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 792-825 9.04e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.04e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 1720412881   792 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 825
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 302-435 1.13e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 1.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  302 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 381
Cdd:COG4235     10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  382 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 435
Cdd:COG4235     82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 340-461 1.47e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.47e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  340 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 411
Cdd:PRK11447   294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1720412881  412 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 461
Cdd:PRK11447   374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 350-374 1.52e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 1.52e-03
                            10        20
                    ....*....|....*....|....*
gi 1720412881   350 RAYGNMGNAYNALGMYDQAVKYHRQ 374
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 843-975 1.54e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  843 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 922
Cdd:PRK02603    46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720412881  923 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 975
Cdd:PRK02603   108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 487-611 1.61e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 1.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  487 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQslDNSQAkfraLGNLGDIFICKKDIN 566
Cdd:COG4235      1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720412881  567 GAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGY 611
Cdd:COG4235     69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 91-409 1.72e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 43.75  E-value: 1.72e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   91 YMQQDLDVAKTLGDQTGEC-------------RAHGNLGSAFFSKGNYREALTNHRHqlVLAMKLKDREAASS------A 151
Cdd:NF040586   403 YLRGDYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEARELDED--TLERQRRVLGLGEDhphtlmT 480

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  152 LSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDlSEAREL---GNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREE 228
Cdd:NF040586   481 AGGLGADLRALGRFREALELDEETLERHRRVFGE-DHPRTLraaNNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHP 559

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  229 ARaysnLGSAYHYrrnfdkamsyhncvlelaqelmekpieMRAYAGLGHAARCMQDLERAKQYHEQQLGIAedlkDRAAE 308
Cdd:NF040586   560 RT----LLSANNL---------------------------ARDLRELGRYAEALDLLEEALERYREVLGGP----DHPDT 604

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  309 GRASSNLGIIHQMKGDYDTALKLHKthlciaqelSDYAAQGRAYG-----------NMGNAYNALGMYDQAvkyhrqeLQ 377
Cdd:NF040586   605 LRAAKSLAVALRRAGRLEEALELAE---------DTYERYRRRFGpdhpdtlaaalSLANDLRALGDADEA-------RE 668

                          330       340       350       360
                   ....*....|....*....|....*....|....*....|.
gi 1720412881  378 ISMEVNDRASQA------STHG---NLAVAYQALGAHDRAL 409
Cdd:NF040586   669 LAREVLDRYRRVlgedhpFTLAcrnNLAVLLRALGDPEEAR 709
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 792-854 1.83e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 1.83e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881  792 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 854
Cdd:COG1729     30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
TPR_1 pfam00515
Tetratricopeptide repeat;
429-461 1.85e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 1.85e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720412881  429 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 461
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
ycf3 CHL00033
photosystem I assembly protein Ycf3
 320-461 2.12e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.12e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  320 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 397
Cdd:CHL00033    46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720412881  398 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 461
Cdd:CHL00033   115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
354-459 2.29e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 42.18  E-value: 2.29e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  354 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 428
Cdd:COG4700     94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 1720412881  429 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 459
Cdd:COG4700    160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
TPR_1 pfam00515
Tetratricopeptide repeat;
350-378 2.41e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.41e-03
                           10        20
                   ....*....|....*....|....*....
gi 1720412881  350 RAYGNMGNAYNALGMYDQAVKYHRQELQI 378
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
ycf3 CHL00033
photosystem I assembly protein Ycf3
 385-499 2.44e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  385 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 463
Cdd:CHL00033    31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|...
gi 1720412881  464 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 499
Cdd:CHL00033   108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 397-494 2.62e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  397 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 476
Cdd:COG1729      1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74

                           90
                   ....*....|....*...
gi 1720412881  477 YAHYCLGNYQEAVKYYEQ 494
Cdd:COG1729     75 LSYLELGDYDKARATLEE 92
COG3899 COG3899
Predicted ATPase [General function prediction only];
38-450 2.76e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.92  E-value: 2.76e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881   38 GQELLTAGHHGASVVVLEAALKIGTCSL-------KLRGSVFSALSSAHWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 110
Cdd:COG3899    752 AEALYLAGRFEEAEALLERALAARALAAlaalrhgNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  111 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEAR 190
Cdd:COG3899    832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAA 911

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  191 ELGnMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMR 270
Cdd:COG3899    912 ALA-AAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAA 990

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  271 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 350
Cdd:COG3899    991 LEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLA 1070

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  351 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEAR 430
Cdd:COG3899   1071 AAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALL 1150

                          410       420
                   ....*....|....*....|
gi 1720412881  431 ALSNLGNFHCSRGEYVQAAP 450
Cdd:COG3899   1151 LLAALLLALALLLLALAALA 1170
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 629-658 3.45e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.45e-03
                            10        20        30
                    ....*....|....*....|....*....|
gi 1720412881   629 CRAHGHLAAVYMALGKYTMAFKCYQEQLEL 658
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
TPR_1 pfam00515
Tetratricopeptide repeat;
470-501 3.51e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 3.51e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 1720412881  470 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 501
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 189-221 3.58e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.58e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 1720412881   189 ARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 221
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 713-1041 3.59e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.60  E-value: 3.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  713 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RATGSLQQALVCFEKR 778
Cdd:NF040586   435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  779 LVVAHEL-GE--------ASNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 849
Cdd:NF040586   505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  850 TALQY----HQLDLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMndlvakt 912
Cdd:NF040586   580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAAL------- 651

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  913 vsysSLGRTHHALQNYSQAVMYLQEGL-RLAEQLGRRedeakirH--------GLGLSLWASGNLEEAQHQLYRASALFe 983
Cdd:NF040586   652 ----SLANDLRALGDADEARELAREVLdRYRRVLGED-------HpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1720412881  984 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1041
Cdd:NF040586   720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2050-2188 5.07e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 5.07e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2050 PILSHQRSQLSPLTVKPQPPARSSSLPKVSSPATSEvsgkdglsppgsshpspgrdTPVSPADPplFRLKYPSSPYSAHI 2129
Cdd:PTZ00449   563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK--------------------RPRSAQRP--TRPKSPKLPELLDI 620

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720412881 2130 SKSPRN----TSPAcSAPSPalsyssagSARSSPadapdEKVQAVHSLKmlwqsTPQPPRGPR 2188
Cdd:PTZ00449   621 PKSPKRpespKSPK-RPPPP--------QRPSSP-----ERPEGPKIIK-----SPKPPKSPK 664
TPR_1 pfam00515
Tetratricopeptide repeat;
229-261 5.35e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 5.35e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720412881  229 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 261
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
391-424 5.45e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.36  E-value: 5.45e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1720412881  391 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 424
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1914-2186 5.89e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 5.89e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1914 SPDPKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVK--SQEESTPK 1991
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwGPENECPL 257

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 1992 LDPQELAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAFSKPILShqrsqlspltvkpqpPAR 2071
Cdd:PHA03307   258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS---------------SSR 322

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881 2072 SSSLPKVSSpaTSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPLFR-----LKYPSSPYSAHISKSPRNTSPACSAPS-P 2145
Cdd:PHA03307   323 ESSSSSTSS--SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkrprpSRAPSSPAASAGRPTRRRARAAVAGRArR 400

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*....
gi 1720412881 2146 ALSYSSAGSARSSP----ADAPDEKVQAVHSLKML----WQSTPQPPRG 2186
Cdd:PHA03307   401 RDATGRFPAGRPRPspldAGAASGAFYARYPLLTPsgepWPGSPPPPPG 449
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 144-423 6.08e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.14  E-value: 6.08e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  144 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLG 223
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  224 SKREEA--RAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 300
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPD-AAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  301 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 374
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720412881  375 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 423
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
TPR_10 pfam13374
Tetratricopeptide repeat;
473-503 6.30e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 6.30e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 1720412881  473 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 503
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 118-220 6.93e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 39.56  E-value: 6.93e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720412881  118 AFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQcvllAKQSKDDLSEARElgNMGA 197
Cdd:COG5010     63 LYNKLGDFEESLALLEQ----ALQLDPNNPE--LYYNLALLYSRSGDKDEAKEYYEK----ALALSPDNPNAYS--NLAA 130

                           90       100
                   ....*....|....*....|...
gi 1720412881  198 VYIAMGDFENAVQCHEQHLRIAK 220
Cdd:COG5010    131 LLLSLGQDDEAKAALQRALGTSP 153
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH