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Conserved domains on  [gi|1720409296|ref|XP_030109529|]
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serine/arginine repetitive matrix protein 1 isoform X18 [Mus musculus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.79e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.79e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 384-799 2.29e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  384 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 463
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  464 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSPS 543
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  544 PPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPsprrysppiqrRYSPSPPPKRRTASPPPPPKRR 623
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP-----------AAPAAGPPRRLTRPAVASLSES 2794

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  624 ASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSlsskhrkGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGAS 703
Cdd:PHA03247  2795 RESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  704 ASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQS-PSTNWSPAV 782
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPTT 2947

                          410
                   ....*....|....*..
gi 1720409296  783 PAKKAKSPTPSLSPARN 799
Cdd:PHA03247  2948 DPAGAGEPSGAVPQPWL 2964
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.79e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.79e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.94e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.94e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409296   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 384-799 2.29e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  384 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 463
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  464 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSPS 543
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  544 PPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPsprrysppiqrRYSPSPPPKRRTASPPPPPKRR 623
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP-----------AAPAAGPPRRLTRPAVASLSES 2794

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  624 ASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSlsskhrkGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGAS 703
Cdd:PHA03247  2795 RESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  704 ASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQS-PSTNWSPAV 782
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPTT 2947

                          410
                   ....*....|....*..
gi 1720409296  783 PAKKAKSPTPSLSPARN 799
Cdd:PHA03247  2948 DPAGAGEPSGAVPQPWL 2964
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
607-740 3.07e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.27  E-value: 3.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 607 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 686
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409296 687 PRAPQTSSPPPVRRGAS--ASPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 740
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGqeHTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.79e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.79e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.94e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.94e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409296   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03247 PHA03247
large tegument protein UL36; Provisional
 384-799 2.29e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 2.29e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  384 SASPPRRRHRPSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRKVELSESEEDKG 463
Cdd:PHA03247  2567 SVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTV 2646

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  464 SKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGeVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSPS 543
Cdd:PHA03247  2647 PPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPT-VGSLTSLADPPPPPPTPEPAPHALVSATPLPPGP 2725

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  544 PPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPsprrysppiqrRYSPSPPPKRRTASPPPPPKRR 623
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP-----------AAPAAGPPRRLTRPAVASLSES 2794

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  624 ASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSlsskhrkGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGAS 703
Cdd:PHA03247  2795 RESLPSPWDPADPPAAVLAPAAALPPAASPA-------GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP 2867

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  704 ASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQS-PSTNWSPAV 782
Cdd:PHA03247  2868 SRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPTT 2947

                          410
                   ....*....|....*..
gi 1720409296  783 PAKKAKSPTPSLSPARN 799
Cdd:PHA03247  2948 DPAGAGEPSGAVPQPWL 2964
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 605-805 3.82e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.94  E-value: 3.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  605 PSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPS 684
Cdd:PHA03307   115 DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  685 PRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRT---------PEPKKIKKAASPSPQSVRRVSSSRSVSGSP 755
Cdd:PHA03307   195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASssdssssesSGCGWGPENECPLPRPAPITLPTRIWEASG 274

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|.
gi 1720409296  756 EPAAKKPPAPPSPVQS-QSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGG 805
Cdd:PHA03307   275 WNGPSSRPGPASSSSSpRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESS 325
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 373-707 3.43e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 3.43e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  373 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRK 452
Cdd:PHA03307    99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAAL 174

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  453 VELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKE 532
Cdd:PHA03307   175 PLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  533 TSPRRRRRSPSPPPA-------RRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSP 605
Cdd:PHA03307   255 CPLPRPAPITLPTRIweasgwnGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSE 334

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  606 SPppkrRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSskhrKGSSPGRSTREARSPQPNKRHSPSP 685
Cdd:PHA03307   335 SS----RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAAS----AGRPTRRRARAAVAGRARRRDATGR 406

                          330       340
                   ....*....|....*....|..
gi 1720409296  686 RPRAPQTSSPPPVRRGASASPQ 707
Cdd:PHA03307   407 FPAGRPRPSPLDAGAASGAFYA 428
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
605-800 6.30e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 6.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 605 PSPPPKRRTASPPPPPKRRASPSPPPKrrVSHSPPPKQRSPTvtkRRSPSLSS--KHRKGSSPGRSTREARSPQPNKRHS 682
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPA--AAAAARAVAAAPA---RRSPAPEAlaAARQASARGPGGAPAPAPAPAAAPA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 683 PSPRPRAPQTSSPPPvrrgASASPQGRQSPSPSTRPIRRvSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP 762
Cdd:PRK12323  460 AAARPAAAGPRPVAA----AAAAAPARAAPAAAPAPADD-DPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1720409296 763 PAPPSpvqSQSPSTNWSPAVPAKKAKSPTPSLSPARNS 800
Cdd:PRK12323  535 DDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 602-797 6.48e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 6.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 602 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 681
Cdd:PRK07764  585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 682 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 757
Cdd:PRK07764  665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1720409296 758 AAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPA 797
Cdd:PRK07764  743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 566-800 7.81e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 7.81e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  566 PRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSP 645
Cdd:PHA03307   145 GPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  646 TVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSS---PPPVRRGASASPQGRQSPSPSTRPIRRV 722
Cdd:PHA03307   225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwnGPSSRPGPASSSSSPRERSPSPSPSSPG 304

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720409296  723 SRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNS 800
Cdd:PHA03307   305 SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
607-740 3.07e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.27  E-value: 3.07e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 607 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 686
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409296 687 PRAPQTSSPPPVRRGAS--ASPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 740
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGqeHTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 600-718 3.94e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 3.94e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  600 QRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREAR 673
Cdd:PHA03307   781 QRGAGSSPPVRAEAAFRRPGRLRRSGPAADaasrtaSKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAA 860

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720409296  674 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 718
Cdd:PHA03307   861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 602-728 5.06e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 602 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPTVTkrrSPSlsskhrkGSSPGRSTREARSPQPN 678
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPA-------AAPPAPVAAPAAAAPAA 436

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720409296 679 KRHsPSPRPRAPQTSSPPPVRRGASASPQgRQSPSPSTRPIRRVSRTPEP 728
Cdd:PRK14951  437 APA-AAPAAVALAPAPPAQAAPETVAIPV-RVAPEPAVASAAPAPAAAPA 484
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 605-717 9.77e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 9.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 605 PSPPPKRRTASPPPPPKRRASPSPPPKRRVshsPPPKQRSPTVTKrrspslsskhrkgSSPGRSTREARSPQPNKRHSPS 684
Cdd:PRK14951  393 PVAQAAAAPAPAAAPAAAASAPAAPPAAAP---PAPVAAPAAAAP-------------AAAPAAAPAAVALAPAPPAQAA 456

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1720409296 685 PRPRA-PQTSSPPPVRRGASASPQGRQSPSPSTR 717
Cdd:PRK14951  457 PETVAiPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 604-739 1.19e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.55  E-value: 1.19e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 604 SPSPPPKRRTASPPPPPKRRASPSP-PPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHS 682
Cdd:PRK07994  363 APLPEPEVPPQSAAPAASAQATAAPtAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409296 683 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 739
Cdd:PRK07994  443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 604-739 2.76e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 41.35  E-value: 2.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 604 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTvtKRRSPSLSSKHRKGSSpgRSTREARSPQPNKRHSP 683
Cdd:pfam08580 483 STLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPALRPPS--RPQPPPPGNRPRWNAS--TNTNDLDVGHNFKPLTL 558

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720409296 684 SPRPRAPQTSSPP--------PVRRGASASPqgrqspSPSTRPIRRVSRTPEPKKIKKAASPSP 739
Cdd:pfam08580 559 TTPSPTPSRSSRSsstlppvsPLSRDKSRSP------APTCRSVSRASRRRASRKPTRIGSPNS 616
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 604-712 3.25e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.12  E-value: 3.25e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 604 SPSPPPKRRTASPPPPPKRRASPSPPPkrrvshSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 683
Cdd:PRK07764  409 APAPAAAAPAAAAAPAPAAAPQPAPAP------APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

                          90       100       110
                  ....*....|....*....|....*....|
gi 1720409296 684 SPRP-RAPQTSSPPPVRRGASASPQGRQSP 712
Cdd:PRK07764  483 APPAaPAPAAAPAAPAAPAAPAGADDAATL 512
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 394-738 5.00e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 5.00e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  394 PSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPRkvelseseedkgskmaaADSVQ 473
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPS-----------------PAPDL 134

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  474 QRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGevGRRRRHSPSRSASPSPRKRQKETSPRRRRRSPSPPPARRRRSP 553
Cdd:PHA03307   135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASS--RQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSP 212

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  554 SPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRR---------RSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRA 624
Cdd:PHA03307   213 ISASASSPAPAPGRSAADDAGASSSDSSSSESSGcgwgpenecPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPR 292

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  625 SPSPPPKRRVSHSPPPKQRSPTVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvRRGAS 703
Cdd:PHA03307   293 ERSPSPSPSSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-KRPRP 371

                          330       340       350
                   ....*....|....*....|....*....|....*
gi 1720409296  704 ASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPS 738
Cdd:PHA03307   372 SRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR 406
PHA03247 PHA03247
large tegument protein UL36; Provisional
 595-797 5.86e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.69  E-value: 5.86e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  595 YSPPIQRRYSPSPPPKRRT--------------ASPPPPPKRRASPSPPPKRRVSHS-PPPKQRSPTVTKR-RSPSLSSK 658
Cdd:PHA03247  2515 LAPAILPDEPVGEPVHPRMltwirgleelasddAGDPPPPLPPAAPPAAPDRSVPPPrPAPRPSEPAVTSRaRRPDAPPQ 2594

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296  659 HRKGSSPGRSTREARSPQPnkrhsPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIR--------RVSRTPEPKK 730
Cdd:PHA03247  2595 SARPRAPVDDRGDPRGPAP-----PSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERprddpapgRVSRPRRARR 2669

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720409296  731 IKKAASPS-PQSVRRVSSSRSVSGSPEPAAKKPPAPPSPvqsQSPSTNWSPAVP------AKKAKSPTPSLSPA 797
Cdd:PHA03247  2670 LGRAAQASsPPQRPRRRAARPTVGSLTSLADPPPPPPTP---EPAPHALVSATPlppgpaAARQASPALPAAPA 2740
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 662-886 9.10e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 9.10e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 662 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 741
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409296 742 VRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKDK 821
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720409296 822 KHKKHKKHKKEKAVTIATPATAAPAAVSAATTTSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 886
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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