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Conserved domains on  [gi|1720409268|ref|XP_030109518|]
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serine/arginine repetitive matrix protein 1 isoform X3 [Mus musculus]

Protein Classification

PWI domain-containing protein( domain architecture ID 10478549)

PWI domain-containing protein may function as a splicing factor; similar to Homo sapiens serine/arginine repetitive matrix protein 1 that is involved in numerous pre-mRNA processing events

CATH:  1.20.1390.10
Gene Ontology:  GO:0006397|GO:0003676
PubMed:  10322432|12600940
SCOP:  4000671

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


:

Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 609-806 6.67e-06

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 6.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNkrhSP 688
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP---LS 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  689 SPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPP 768
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1720409268  769 APPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSD 806
Cdd:PHA03307   258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.96e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.96e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409268   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 609-806 6.67e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 6.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNkrhSP 688
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP---LS 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  689 SPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPP 768
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1720409268  769 APPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSD 806
Cdd:PHA03307   258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
612-745 3.20e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.27  E-value: 3.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 612 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 691
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409268 692 PRAPQTSSPPPVRRGAS--ASPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 745
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGqeHTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
 
Name Accession Description Interval E-value
PWI pfam01480
PWI domain;
46-115 3.81e-38

PWI domain;


Pssm-ID: 460224 [Multi-domain]  Cd Length: 71  Bit Score: 136.48  E-value: 3.81e-38
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  46 EVIKPWITKRVTEILGFEDDVVIEFIFNQLEVKNPDSKMMQINLTGFLNgKNAREFMGELWPLLLSAQEN 115
Cdd:pfam01480   1 EVLKPWIEKKITEILGFEDDVVVEYVVNLLEEKFPDPKELQIQLTGFLD-KDAAKFVKELWKLLLSAQES 69
PWI smart00311
PWI, domain in splicing factors;
40-115 1.96e-28

PWI, domain in splicing factors;


Pssm-ID: 214609 [Multi-domain]  Cd Length: 74  Bit Score: 108.97  E-value: 1.96e-28
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409268   40 MSKVNLEVIKPWITKRVTEILGFEDDVVIEFIFNQLEV-KNPDSKMMQINLTGFLngkNAREFMGELWPLLLSAQEN 115
Cdd:smart00311   1 LSKLKLDEIKPWITKKVIEFLGFEEDTLVEFILSQIRQhKGPQAKLLQINLTGFE---DAEEFVDKLWRLLIFELKN 74
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 609-806 6.67e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 50.17  E-value: 6.67e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNkrhSP 688
Cdd:PHA03307   101 AREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALP---LS 177

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  689 SPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPP 768
Cdd:PHA03307   178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPL 257

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1720409268  769 APPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSD 806
Cdd:PHA03307   258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERS 295
PHA03247 PHA03247
large tegument protein UL36; Provisional
 609-804 1.01e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 1.01e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVShSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRST-REARSPQPNKRHS 687
Cdd:PHA03247  2753 GPARPARPPTTAGPPAPAPPAAPAAGPPRRLT-RPAVASLSESRESLPSPWDPADPPAAVLAPAAAlPPAASPAGPLPPP 2831

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  688 PSPRPRAPQTSSPP---------------PVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSS 752
Cdd:PHA03247  2832 TSAQPTAPPPPPGPpppslplggsvapggDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP 2911

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|...
gi 1720409268  753 SRSVSGSPEPAAKKPPAPPSPVQSQS-PSTNWSPAVPAKKAKSPTPSLSPARN 804
Cdd:PHA03247  2912 QAPPPPQPQPQPPPPPQPQPPPPPPPrPQPPLAPTTDPAGAGEPSGAVPQPWL 2964
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
610-805 6.56e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 46.79  E-value: 6.56e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 610 PSPPPKRRTASPPPPPKRRASPSPPPKrrVSHSPPPKQRSPTvtkRRSPSLSS--KHRKGSSPGRSTREARSPQPNKRHS 687
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPA--AAAAARAVAAAPA---RRSPAPEAlaAARQASARGPGGAPAPAPAPAAAPA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 688 PSPRPRAPQTSSPPPvrrgASASPQGRQSPSPSTRPIRRvSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKP 767
Cdd:PRK12323  460 AAARPAAAGPRPVAA----AAAAAPARAAPAAAPAPADD-DPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADP 534

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1720409268 768 PAPPSpvqSQSPSTNWSPAVPAKKAKSPTPSLSPARNS 805
Cdd:PRK12323  535 DDAFE---TLAPAPAAAPAPRAAAATEPVVAPRPPRAS 569
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 607-802 6.63e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 6.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 607 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 686
Cdd:PRK07764  585 EAVVGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 687 SPSPRPR----APQTSSPPPVRRGASASPQGRQSPSPSTRPirRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEP 762
Cdd:PRK07764  665 GGDGWPAkaggAAPAAPPPAPAPAAPAAPAGAAPAQPAPAP--AATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 1720409268 763 AAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPA 802
Cdd:PRK07764  743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 399-743 7.60e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 7.60e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  399 PSSPATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTKHKGTEKRESPSPAPKPrkvelseseDKGSKMAAADSVQQ 478
Cdd:PHA03307    72 PPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP---------SPAPDLSEMLRPVG 142

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  479 RRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKEtsPRSRRRRSPSPPPARRRRSP 558
Cdd:PHA03307   143 SPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPA--AASPRPPRRSSPISASASSP 220

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  559 SPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPP-PKRRTASPPPPPKRRASPSPPPKR 637
Cdd:PHA03307   221 APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPRERSPSPSP 300

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  638 RVSHSPPPKQRSPTVTKR-RSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPvRRGASASPQGRQS 716
Cdd:PHA03307   301 SSPGSGPAPSSPRASSSSsSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR-KRPRPSRAPSSPA 379

                          330       340
                   ....*....|....*....|....*..
gi 1720409268  717 PSPSTRPIRRVSRTPEPKKIKKAASPS 743
Cdd:PHA03307   380 ASAGRPTRRRARAAVAGRARRRDATGR 406
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 571-805 8.13e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 8.13e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  571 PRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSP 650
Cdd:PHA03307   145 GPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAP 224

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  651 TVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPRPRAPQTSS---PPPVRRGASASPQGRQSPSPSTRPIRRV 727
Cdd:PHA03307   225 GRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASgwnGPSSRPGPASSSSSPRERSPSPSPSSPG 304

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720409268  728 SRTPEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNS 805
Cdd:PHA03307   305 SGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 378-712 8.56e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.70  E-value: 8.56e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  378 SPPRKTRRLSPSASPPRRRHRPSSPATPPPktrhSPTPQQSNRTRKSRVSVSPGRTSGKVTkhkGTEKRESPSPAPKPRK 457
Cdd:PHA03307    99 SPAREGSPTPPGPSSPDPPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAA---GASPAAVASDAASSRQ 171

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  458 ----VELSESEDKGSKMAAADSVQQRRQYRRQNQQSSSDSGSSSTSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKR 533
Cdd:PHA03307   172 aalpLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGP 251

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  534 QKETSPRSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPpiqrrySPSPP 613
Cdd:PHA03307   252 ENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSS------SRESS 325

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  614 PKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPN----KRHSPS 689
Cdd:PHA03307   326 SSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAgrarRRDATG 405

                          330       340
                   ....*....|....*....|...
gi 1720409268  690 PRPRAPQTSSPPPVRRGASASPQ 712
Cdd:PHA03307   406 RFPAGRPRPSPLDAGAASGAFYA 428
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
612-745 3.20e-04

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 44.27  E-value: 3.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 612 PPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPR 691
Cdd:pfam05539 168 PKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSP 247

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409268 692 PRAPQTSSPPPVRRGAS--ASPQGRQSPSPS-TRPIRRVSRTPEPKKIKKAASPSPQ 745
Cdd:pfam05539 248 QHPPSTTSQDQSTTGDGqeHTQRRKTPPATSnRRSPHSTATPPPTTKRQETGRPTPR 304
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 605-723 4.14e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 4.14e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  605 QRRYSPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREAR 678
Cdd:PHA03307   781 QRGAGSSPPVRAEAAFRRPGRLRRSGPAADaasrtaSKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAA 860

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1720409268  679 SPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRP 723
Cdd:PHA03307   861 AGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRP 905
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 607-733 5.14e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 43.93  E-value: 5.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 607 RYSPSPPPKRRTASPPPPPKRRASPSPPPKR---RVSHSPPPKQRSPTVTkrrSPSlsskhrkGSSPGRSTREARSPQPN 683
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAaaaPAPAAAPAAAASAPAA---PPA-------AAPPAPVAAPAAAAPAA 436

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1720409268 684 KRHsPSPRPRAPQTSSPPPVRRGASASPQgRQSPSPSTRPIRRVSRTPEP 733
Cdd:PRK14951  437 APA-AAPAAVALAPAPPAQAAPETVAIPV-RVAPEPAVASAAPAPAAAPA 484
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 610-722 9.84e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.78  E-value: 9.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 610 PSPPPKRRTASPPPPPKRRASPSPPPKRRVshsPPPKQRSPTVTKrrspslsskhrkgSSPGRSTREARSPQPNKRHSPS 689
Cdd:PRK14951  393 PVAQAAAAPAPAAAPAAAASAPAAPPAAAP---PAPVAAPAAAAP-------------AAAPAAAPAAVALAPAPPAQAA 456

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1720409268 690 PRPRA-PQTSSPPPVRRGASASPQGRQSPSPSTR 722
Cdd:PRK14951  457 PETVAiPVRVAPEPAVASAAPAPAAAPAAARLTP 490
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 609-744 1.20e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 42.55  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 609 SPSPPPKRRTASPPPPPKRRASPSP-PPKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHS 687
Cdd:PRK07994  363 APLPEPEVPPQSAAPAASAQATAAPtAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE 442

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1720409268 688 PSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRRVSRTPEPKKIKKAASPSP 744
Cdd:PRK07994  443 PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKA 499
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 609-702 1.46e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 1.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPK--QRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRH 686
Cdd:PRK07764  409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGnaPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488

                          90
                  ....*....|....*.
gi 1720409268 687 SPSPRPRAPQTSSPPP 702
Cdd:PRK07764  489 APAAAPAAPAAPAAPA 504
PHA03247 PHA03247
large tegument protein UL36; Provisional
 585-800 2.37e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.85  E-value: 2.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  585 TPSPPPRRRSPSPRRYSPPIQRRySPSPPPKRRTASP----------PPPPKRRASPSPPPKRRVSHSPPPKQ--RSPTV 652
Cdd:PHA03247  2655 DPAPGRVSRPRRARRLGRAAQAS-SPPQRPRRRAARPtvgsltsladPPPPPPTPEPAPHALVSATPLPPGPAaaRQASP 2733

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  653 TKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSPSPrPRAPQTSSPP--PVRRGASASPQGRQSPSPSTRPIRRVSRT 730
Cdd:PHA03247  2734 ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP-PAAPAAGPPRrlTRPAVASLSESRESLPSPWDPADPPAAVL 2812

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720409268  731 PEPKKIKKAASPSPQSVRRVSSSRSVSGSPEPAAKKPPAPPSPVQ-----SQSPSTNWSPAVPAKKAKSPTPSLS 800
Cdd:PHA03247  2813 APAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApggdvRRRPPSRSPAAKPAAPARPPVRRLA 2887
KAR9 pfam08580
Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...
 609-744 2.77e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.


Pssm-ID: 430088 [Multi-domain]  Cd Length: 684  Bit Score: 41.35  E-value: 2.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 609 SPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPTvtKRRSPSLSSKHRKGSSpgRSTREARSPQPNKRHSP 688
Cdd:pfam08580 483 STLKQTKRPSKIPRASPNHSGFLSTPSNTATSETPTPALRPPS--RPQPPPPGNRPRWNAS--TNTNDLDVGHNFKPLTL 558

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1720409268 689 SPRPRAPQTSSPP--------PVRRGASASPqgrqspSPSTRPIRRVSRTPEPKKIKKAASPSP 744
Cdd:pfam08580 559 TTPSPTPSRSSRSsstlppvsPLSRDKSRSP------APTCRSVSRASRRRASRKPTRIGSPNS 616
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 609-798 7.56e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.15  E-value: 7.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  609 SPSPPPKRRTASPPPPPKRRASPSPP------PKRRVSHSPPPKQRSPTVTKRRSPSLSSKHRKGSSPGRSTREARSP-- 680
Cdd:PHA03307   219 SPAPAPGRSAADDAGASSSDSSSSESsgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPsp 298

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268  681 QPNKRHSPSPRPRAPQTSSPPPVRRGASASPqGRQSPSPSTRPirrVSRTPEPkkikkAASPSPQSVRRVSSSRSVSGSP 760
Cdd:PHA03307   299 SPSSPGSGPAPSSPRASSSSSSSRESSSSST-SSSSESSRGAA---VSPGPSP-----SRSPSPSRPPPPADPSSPRKRP 369

                          170       180       190
                   ....*....|....*....|....*....|....*...
gi 1720409268  761 EPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPS 798
Cdd:PHA03307   370 RPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRF 407
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 667-891 9.16e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 9.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 667 GSSPGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIrrvsrTPEPKKIKKAASPSPQS 746
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGV-----AAPEHHPKHVAVPDASD 664

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720409268 747 VRRVSSSRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPAKKAKSPTPSLSPARNSDQEGGGKKKKKKKDKKHKKDK 826
Cdd:PRK07764  665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720409268 827 KHKKHKKHKKEKAVTIATPATAAPAAVSAATTTSAQEEPA----AAPEPRKETESEAEDDNLDDLERHL 891
Cdd:PRK07764  745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEmaedDAPSMDDEDRRDAEEVAMELLEEEL 813
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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