|
Name |
Accession |
Description |
Interval |
E-value |
| CID_RPRD2 |
cd17001 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2; ... |
27-146 |
7.18e-84 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2; Regulation of nuclear pre-mRNA domain-containing protein 2 (RPRD2) is a CID (CTD-Interacting Domain) domain containing protein that co-purifies with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340798 Cd Length: 125 Bit Score: 269.86 E-value: 7.18e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:cd17001 6 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIVFRESFAEVLPE 85
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1720405414 107 AAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVALREALS 146
Cdd:cd17001 86 AAALVKDASVSKSVERIFKIWEERNVYPEETIAALKEALS 125
|
|
| CID |
pfam04818 |
CID domain; This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase ... |
27-138 |
4.24e-42 |
|
CID domain; This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase II. This domain is known as the CTD-interacting domain (CID).
Pssm-ID: 461442 Cd Length: 117 Bit Score: 150.05 E-value: 4.24e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:pfam04818 3 LEKKLSSLNNSQESIQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDVLQNSRKKGKSEFADAFEPVLPE 82
|
90 100 110
....*....|....*....|....*....|....*
gi 1720405414 107 AAALV---KDPSVSKSIERIFKIWEDRNVYPEDMI 138
Cdd:pfam04818 83 AFASAykkCDEKLKKKLERLLNIWEERNVFSPEVI 117
|
|
| RPR |
smart00582 |
domain present in proteins, which are involved in regulation of nuclear pre-mRNA; |
27-145 |
4.30e-31 |
|
domain present in proteins, which are involved in regulation of nuclear pre-mRNA;
Pssm-ID: 214731 Cd Length: 124 Bit Score: 118.92 E-value: 4.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPVPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1720405414 107 AAALVKDPSVS---KSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:smart00582 82 ALRRVLGAAPEelkKKIRRLLNIWEERGIFPPEVLRPLREKL 123
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
319-645 |
3.87e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.00 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 319 SPVPSPSMDAPSPTgSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDvedmelsdveddgskiivedrkekpvEKPAV 398
Cdd:pfam05109 475 SPTPAGTTSGASPV-TPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS--------------------------PTPAV 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 399 STGVPTKSTESVSKASPCAPPSVPT-TAAPPLPkplstALLSPSPTLVLPNLANVdlakisSILSSLTSVMKNTGVSSAS 477
Cdd:pfam05109 528 TTPTPNATSPTLGKTSPTSAVTTPTpNATSPTP-----AVTTPTPNATIPTLGKT------SPTSAVTTPTPNATSPTVG 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 478 RPSPGIPTSPSNLSSGLKTP----------APATTPSHNPLANILSKVEITPESILSALSKT----QTQSAPALQGLSSL 543
Cdd:pfam05109 597 ETSPQANTTNHTLGGTSSTPvvtsppknatSAVTTGQHNITSSSTSSMSLRPSSISETLSPStsdnSTSHMPLLTSAHPT 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 544 LQSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTF 623
Cdd:pfam05109 677 GGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGG 756
|
330 340
....*....|....*....|...
gi 1720405414 624 KLPSSSLG-FTGTHNPSPAAPPT 645
Cdd:pfam05109 757 KANSTTGGkHTTGHGARTSTEPT 779
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-668 |
1.76e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 314 PDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSAtPEPVTDNRDVEDMELSDVEDDGSKIiveDRKEKPV 393
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD-PAPGRVSRPRRARRLGRAAQASSPP---QRPRRRA 2687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 394 EKPAVStgvptkstesvSKASPCAPPSVPTTAAPPlPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTGV 473
Cdd:PHA03247 2688 ARPTVG-----------SLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA 2755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 474 SSASRPSPGIPTSPSNLSSGLKTPAPATTPshnPLANILSkveitpESILSALSKTQTQSAPALQGLSSLLQSVTANPVP 553
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTR---PAVASLS------ESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 554 ASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTFKLPSSSLGFT 633
Cdd:PHA03247 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
|
330 340 350
....*....|....*....|....*....|....*
gi 1720405414 634 GTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPS 668
Cdd:PHA03247 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
142-318 |
3.62e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 142 REALSTTFKTQKQLKENLNKQpNKQWKKSQTStnpKAALKSKIVaEFRSQalIEELlmyKRSEDQIELKEKQLSTMRVDV 221
Cdd:PRK03918 223 LEKLEKEVKELEELKEEIEEL-EKELESLEGS---KRKLEEKIR-ELEER--IEEL---KKEIEELEEKVKELKELKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 222 CSTETLKCLKDKTggKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENagifYEAQYKEVKVVANAYKTFA---NR 298
Cdd:PRK03918 293 EEYIKLSEFYEEY--LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHelyEE 366
|
170 180
....*....|....*....|..
gi 1720405414 299 VNNLKKKLDQLKSTLPD--PEE 318
Cdd:PRK03918 367 AKAKKEELERLKKRLTGltPEK 388
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CID_RPRD2 |
cd17001 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2; ... |
27-146 |
7.18e-84 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 2; Regulation of nuclear pre-mRNA domain-containing protein 2 (RPRD2) is a CID (CTD-Interacting Domain) domain containing protein that co-purifies with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340798 Cd Length: 125 Bit Score: 269.86 E-value: 7.18e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:cd17001 6 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIVFRESFAEVLPE 85
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1720405414 107 AAALVKDPSVSKSIERIFKIWEDRNVYPEDMIVALREALS 146
Cdd:cd17001 86 AAALVKDASVSKSVERIFKIWEERNVYPEETIAALKEALS 125
|
|
| CID_RPRD_like |
cd16981 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing proteins; ... |
27-145 |
9.18e-56 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing proteins; This family is composed of Regulation of nuclear pre-mRNA domain-containing proteins 1A (RPRD1A), 1B (RPRD1B), 2 (RPRD2), yeast Rtt103, and similar proteins. RPRD1A, RPRD1B, and RPRD2 are CID (CTD-Interacting Domain) containing proteins that co-purify with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. Yeast transcription termination factor Rtt103 is a CID containing protein that functions in DNA damage response. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340778 Cd Length: 125 Bit Score: 189.33 E-value: 9.18e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:cd16981 4 LEKKLRSLNNTQQSIQTLSLWCLFHKKHAKQIVKIWLKELKKAKPERKLTLLYLANDVLQNSRRKGAPEFVEAFKKVLPE 83
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1720405414 107 AAALVK---DPSVSKSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:cd16981 84 ALALVRsegDESVRKKVLRVLNIWEERNVFGSEFLAELRAIL 125
|
|
| CID |
pfam04818 |
CID domain; This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase ... |
27-138 |
4.24e-42 |
|
CID domain; This domain binds to the phosphorylated C-terminal domain (CTD) of RNA polymerase II. This domain is known as the CTD-interacting domain (CID).
Pssm-ID: 461442 Cd Length: 117 Bit Score: 150.05 E-value: 4.24e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:pfam04818 3 LEKKLSSLNNSQESIQTLSKWILFHRKHAKAIVEVWEKYLKKAKPEKKLHLLYLANDVLQNSRKKGKSEFADAFEPVLPE 82
|
90 100 110
....*....|....*....|....*....|....*
gi 1720405414 107 AAALV---KDPSVSKSIERIFKIWEDRNVYPEDMI 138
Cdd:pfam04818 83 AFASAykkCDEKLKKKLERLLNIWEERNVFSPEVI 117
|
|
| CID_RPRD1 |
cd17002 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1 and ... |
27-145 |
7.82e-37 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1 and similar proteins; This subfamily contains Regulation of nuclear pre-mRNA domain-containing proteins 1A (RPRD1A) and 1B (RPRD1B) from jawed vertebrates, CID domain-containing protein 1 (CIDS1 or cids-1) from Caenorhabditis elegans, and similar proteins. RPRD1A and RPRD1B are CID (CTD-Interacting Domain) containing proteins that co-purify with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. RPRD1A and RPRD1B form homodimers and heterodimers through their coiled-coil domains. Both associate directly with RPAP2 phosphatase and serve as CTD scaffolds to coordinate the dephosphorylation of phospho-S5 by RPAP2. The function of CIDS1 is not yet known. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340799 Cd Length: 128 Bit Score: 135.46 E-value: 7.82e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAiIFRESFADVLPE 106
Cdd:cd17002 6 LEKKLAELSNSQQSIQTLSLWLIHHRKHAKTIVRVWLKELRKEKPSKKLTLLYLANDVIQNSRKKGP-EFTKEFAPVLED 84
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1720405414 107 AAALV---KDPSVSKSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:cd17002 85 AFKHVaklTDSEVLKALERILNIWKERQVYEKDFIEQLRAAL 126
|
|
| RPR |
smart00582 |
domain present in proteins, which are involved in regulation of nuclear pre-mRNA; |
27-145 |
4.30e-31 |
|
domain present in proteins, which are involved in regulation of nuclear pre-mRNA;
Pssm-ID: 214731 Cd Length: 124 Bit Score: 118.92 E-value: 4.30e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPE 106
Cdd:smart00582 2 FEQKLESLNNSQESIQTLTKWAIEHASHAKEIVELWEKYIKKAPVPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1720405414 107 AAALVKDPSVS---KSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:smart00582 82 ALRRVLGAAPEelkKKIRRLLNIWEERGIFPPEVLRPLREKL 123
|
|
| CID_Rtt103 |
cd17003 |
CID (CTD-Interacting Domain) of yeast transcription termination factor Rtt103 and similar ... |
30-145 |
2.03e-26 |
|
CID (CTD-Interacting Domain) of yeast transcription termination factor Rtt103 and similar proteins; Yeast transcription termination factor Rtt103 is a CID (CTD-Interacting Domain) containing protein that functions in DNA damage response. It associates with sites of DNA breaks and is essential for recovery from DNA double strand breaks in the chromosome. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II (RNAP II). Rtt103 CID preferentially interacts with CTD phosphorylated at Ser2. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340800 Cd Length: 127 Bit Score: 105.77 E-value: 2.03e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 30 KFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTY--PHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEA 107
Cdd:cd17003 7 KLNALNETQESIVSISQWVLFHYRHADEIAEIWSDYLLKSSVnsRRKLLLIYLANDVVQQAKAKKKTEFIDAFSKVLPEV 86
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1720405414 108 AALVK---DPSVSKSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:cd17003 87 LEKIYpslPSDIKKKIKRVVNVWKQRQIFSKDVIDDIEERL 127
|
|
| CID_RPRD1A |
cd17011 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A; ... |
27-145 |
1.26e-25 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1A; Regulation of nuclear pre-mRNA domain-containing protein 1A (RPRD1A) is also called Cyclin-dependent kinase inhibitor 2B-related protein or p15INK4B-related protein (P15RS). RPRD1A is a CID (CTD-Interacting Domain) containing protein that co-purifies with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. RPRD1A form homodimers and heterodimers with RPRD1B through their coiled-coil domains. Both RPRD1A and RPRD1B associate directly with RPAP2 phosphatase and serve as CTD scaffolds to coordinate the dephosphorylation of phospho-S5 by RPAP2. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340808 Cd Length: 128 Bit Score: 103.58 E-value: 1.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAiIFRESFADVLPE 106
Cdd:cd17011 6 LEKKLSELSNSQQSVQTLSLWLIHHRKHSRPIVTVWERELRKAKPNRKLTFLYLANDVIQNSKRKGP-EFTKDFAPVIVE 84
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1720405414 107 AAALVK---DPSVSKSIERIFKIWEDRNVYPEDMIVALREAL 145
Cdd:cd17011 85 AFKHVSsetDESCKKHLGRVLSIWEERSVYENDVLEQLKQAL 126
|
|
| CID_RPRD1B |
cd17012 |
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1B; ... |
27-142 |
3.43e-24 |
|
CID (CTD-Interacting Domain) of Regulation of nuclear pre-mRNA domain-containing protein 1B; Regulation of nuclear pre-mRNA domain-containing protein 1B (RPRD1B) is also called Cell cycle-related and expression-elevated protein in tumor (CREPT). RPRD1B is a CID (CTD-Interacting Domain) containing protein that co-purifies with RNA polymerase (Pol) II (RNAP II) and three other RNAP II-associated proteins, RPAP2, GRINL1A and RECQL5, but not with the Mediator complex. CID binds tightly to the carboxy-terminal domain (CTD) of RNAP II. During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. RPRD1B form homodimers and heterodimers with RPRD1A through their coiled-coil domains. Both RPRD1A and RPRD1B associate directly with RPAP2 phosphatase and serve as CTD scaffolds to coordinate the dephosphorylation of phospho-S5 by RPAP2. RPRD1B is highly expressed during tumorigenesis and in endometrial cancer, has been shown to promote tumor growth by accelerating the cell cycle. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340809 Cd Length: 129 Bit Score: 99.31 E-value: 3.43e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 27 LDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAIIFREsFADVLPE 106
Cdd:cd17012 7 LEKKLSELSNSQQSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSSRKLTFLYLANDVIQNSKRKGPEFTRE-FESVLVD 85
|
90 100 110
....*....|....*....|....*....|....*....
gi 1720405414 107 AAALVK---DPSVSKSIERIFKIWEDRNVYPEDMIVALR 142
Cdd:cd17012 86 AFSHVAreaDEGCKKPLERLLNIWQERSVYGGDFIQQLK 124
|
|
| CID |
cd03562 |
CID (CTD-Interacting Domain) family; The CTD-Interacting Domain (CID) is present in several ... |
36-144 |
3.07e-14 |
|
CID (CTD-Interacting Domain) family; The CTD-Interacting Domain (CID) is present in several eukaryotic RNA-processing factors including yeast proteins, Pcf11 and Nrd1, and vertebrate proteins, CTD-associated factors 8 (SCAF8) and Regulation of nuclear pre-mRNA domain-containing proteins (such as RPRD1 and RPRD2). Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II (RNAP II). During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340766 Cd Length: 123 Bit Score: 70.62 E-value: 3.07e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 36 NTMESIQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAiIFRESFADVLPEA---AALVK 112
Cdd:cd03562 13 LSQQSITTLTKWAIHHIKHSRPIVTVIEREIRKCKPNRKLTFLYLIDSIIRNSKRKGP-EFTKDFSPVIVELfkhVYSET 91
|
90 100 110
....*....|....*....|....*....|..
gi 1720405414 113 DPSVSKSIERIFKIWEDRNVYPEDMIVALREA 144
Cdd:cd03562 92 DEDCKKKLGRVLSIWEERNVFENSVLEQLKQA 123
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
319-645 |
3.87e-08 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 58.00 E-value: 3.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 319 SPVPSPSMDAPSPTgSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDvedmelsdveddgskiivedrkekpvEKPAV 398
Cdd:pfam05109 475 SPTPAGTTSGASPV-TPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATS--------------------------PTPAV 527
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 399 STGVPTKSTESVSKASPCAPPSVPT-TAAPPLPkplstALLSPSPTLVLPNLANVdlakisSILSSLTSVMKNTGVSSAS 477
Cdd:pfam05109 528 TTPTPNATSPTLGKTSPTSAVTTPTpNATSPTP-----AVTTPTPNATIPTLGKT------SPTSAVTTPTPNATSPTVG 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 478 RPSPGIPTSPSNLSSGLKTP----------APATTPSHNPLANILSKVEITPESILSALSKT----QTQSAPALQGLSSL 543
Cdd:pfam05109 597 ETSPQANTTNHTLGGTSSTPvvtsppknatSAVTTGQHNITSSSTSSMSLRPSSISETLSPStsdnSTSHMPLLTSAHPT 676
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 544 LQSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTF 623
Cdd:pfam05109 677 GGENITQVTPASTSTHHVSTSSPAPRPGTTSQASGPGNSSTSTKPGEVNVTKGTPPKNATSPQAPSGQKTAVPTVTSTGG 756
|
330 340
....*....|....*....|...
gi 1720405414 624 KLPSSSLG-FTGTHNPSPAAPPT 645
Cdd:pfam05109 757 KANSTTGGkHTTGHGARTSTEPT 779
|
|
| CID_SCAF8_like |
cd16983 |
CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8 and similar proteins; ... |
41-144 |
4.11e-08 |
|
CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8 and similar proteins; This subfamily includes SR-related and CTD-associated factors 8 (SCAF8) and 4 (SCAF4), and similar proteins. SCAF4 is also called Splicing factor arginine serine rich 15 (SFRS15). Members may play roles in mRNA processing. Both SCAF4 and SCAF8 contains a CTD-interacting domain (CID) at the amino terminus and a Ser/Arg-rich domain followed by an RNA recognition motif. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II (RNAP II). During transcription, RNAP II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr1-Ser2-Pro3-Thr4-Ser5-Pro6-Ser7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Pssm-ID: 340780 Cd Length: 131 Bit Score: 53.38 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 41 IQGLSSWCIENKKHHSTIVYHWMKWLRRSTYPHRLNLFYLANDVIQNCKRKNAII---FRESFADVL-PEAAALVKDPSV 116
Cdd:cd16983 22 INAITKLAIKAIKFYKHVVQSVEKFIQKCKPEYKLPGLYVIDSIIRQSRHQYGKEkdvYAPRFAKNLsKTFLNLLKCPEK 101
|
90 100
....*....|....*....|....*....
gi 1720405414 117 SKS-IERIFKIWEDRNVYPEDMIVALREA 144
Cdd:cd16983 102 DKPkVKRVLNLWQKNGVFPKEIIQPLLDA 130
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-668 |
1.76e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.02 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 314 PDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSAtPEPVTDNRDVEDMELSDVEDDGSKIiveDRKEKPV 393
Cdd:PHA03247 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD-PAPGRVSRPRRARRLGRAAQASSPP---QRPRRRA 2687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 394 EKPAVStgvptkstesvSKASPCAPPSVPTTAAPPlPKPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTGV 473
Cdd:PHA03247 2688 ARPTVG-----------SLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA 2755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 474 SSASRPSPGIPTSPSNLSSGLKTPAPATTPshnPLANILSkveitpESILSALSKTQTQSAPALQGLSSLLQSVTANPVP 553
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTR---PAVASLS------ESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 554 ASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTFKLPSSSLGFT 633
Cdd:PHA03247 2827 PLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
|
330 340 350
....*....|....*....|....*....|....*
gi 1720405414 634 GTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPS 668
Cdd:PHA03247 2907 RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQP 2941
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-577 |
1.33e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.32 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 314 PDPEESPVPSPSMDAP-SPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKiivedrkeKP 392
Cdd:PHA03247 2733 PALPAAPAPPAVPAGPaTPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW--------DP 2804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 393 VEKPAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVlpnlANVDLAKISSILSSLTSVMKNTG 472
Cdd:PHA03247 2805 ADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA----PGGDVRRRPPSRSPAAKPAAPAR 2880
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 473 VSSASRPSPGIPTSPSNLSSGLKTPAPATTPSHNPLANILSKVEITPesilsalsktQTQSAPALQGLSSLLQSVTANPV 552
Cdd:PHA03247 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPP----------QPQPPPPPPPRPQPPLAPTTDPA 2950
|
250 260
....*....|....*....|....*
gi 1720405414 553 PASEvtsqSTTASPASTTGSAVKGR 577
Cdd:PHA03247 2951 GAGE----PSGAVPQPWLGALVPGR 2971
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
396-715 |
9.50e-05 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 47.22 E-value: 9.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 396 PAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLST----ALLSPSPTlvlpNLANVDLAKISSILSSLTSVmkNT 471
Cdd:pfam05109 442 PNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAGTtsgaSPVTPSPS----PRDNGTESKAPDMTSPTSAV--TT 515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 472 GVSSASRPSPGIPTSPSNLSS---GLKTPAPA-TTPSHNPLANILSKVEITPESILSALSKTQTQSA---PALQGLSSLL 544
Cdd:pfam05109 516 PTPNATSPTPAVTTPTPNATSptlGKTSPTSAvTTPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAvttPTPNATSPTV 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 545 -----QSVTANPVPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSfipkSFNYSPSSSTSEVSSTSASKASVGQSPVL- 618
Cdd:pfam05109 596 getspQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSST----SSMSLRPSSISETLSPSTSDNSTSHMPLLt 671
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 619 ---PSTTFKLPSSSLGFTGTHNPSPAAPPTEVAVcqSSEVSKPKPESESTSPSLEmkihNFLKGNP--------GFSGLN 687
Cdd:pfam05109 672 sahPTGGENITQVTPASTSTHHVSTSSPAPRPGT--TSQASGPGNSSTSTKPGEV----NVTKGTPpknatspqAPSGQK 745
|
330 340 350
....*....|....*....|....*....|....*
gi 1720405414 688 LNIPILSSLGSSAPS-------EGHASDFQRGPTS 715
Cdd:pfam05109 746 TAVPTVTSTGGKANSttggkhtTGHGARTSTEPTT 780
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
399-579 |
3.58e-04 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 44.29 E-value: 3.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 399 STGVPTKSTESVSKASPCAPPSVPTTAAPPL-PKPLSTALLSPSPTLVLPNLAN-----VDLAKISSILSSLTSVMKNTG 472
Cdd:PRK11901 84 SSSLSSGNQSSPSAANNTSDGHDASGVKNTApPQDISAPPISPTPTQAAPPQTPngqqrIELPGNISDALSQQQGQVNAA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 473 VSSASRPSPGIPTSPSNLSSGLKTPAPATTPSHN--PLANILSKVEITPESILSALSKTQTQSAP-ALQGLSSLLQSvta 549
Cdd:PRK11901 164 SQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPtpPQKPATKKPAVNHHKTATVAVPPATSGKPkSGAASARALSS--- 240
|
170 180 190
....*....|....*....|....*....|
gi 1720405414 550 npVPASEVTSQSTTASPASTTGSAVKGRNL 579
Cdd:PRK11901 241 --APASHYTLQLSSASRSDTLNAYAKKQNL 268
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
142-318 |
3.62e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 142 REALSTTFKTQKQLKENLNKQpNKQWKKSQTStnpKAALKSKIVaEFRSQalIEELlmyKRSEDQIELKEKQLSTMRVDV 221
Cdd:PRK03918 223 LEKLEKEVKELEELKEEIEEL-EKELESLEGS---KRKLEEKIR-ELEER--IEEL---KKEIEELEEKVKELKELKEKA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 222 CSTETLKCLKDKTggKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENagifYEAQYKEVKVVANAYKTFA---NR 298
Cdd:PRK03918 293 EEYIKLSEFYEEY--LDELREIEKRLSRLEEEINGIEERIKELEEKEERLEE----LKKKLKELEKRLEELEERHelyEE 366
|
170 180
....*....|....*....|..
gi 1720405414 299 VNNLKKKLDQLKSTLPD--PEE 318
Cdd:PRK03918 367 AKAKKEELERLKKRLTGltPEK 388
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
314-577 |
5.47e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 44.78 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 314 PDPEESPVPSPSMDAP-SPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKEKP 392
Cdd:PHA03307 82 NESRSTPTWSLSTLAPaSPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAA 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 393 VEKPAVSTG-------VPTKSTESVSKASPCAPPSVPTTAAPPLPKPLST--ALLSPSPTLVLPNLANVDLAKISSILSS 463
Cdd:PHA03307 162 VASDAASSRqaalplsSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSpiSASASSPAPAPGRSAADDAGASSSDSSS 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 464 LTSVMKN-------------------------TGVSSASRPSPGIPTSPSNLSSGLKTPAPATTPSHNPLANILSKVEIT 518
Cdd:PHA03307 242 SESSGCGwgpenecplprpapitlptriweasGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSS 321
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720405414 519 PESILSALSKTQTQSAPALQGLSSLLQSVTAN----PVPASEVTSQSTTASPASTTGSAVKGR 577
Cdd:PHA03307 322 RESSSSSTSSSSESSRGAAVSPGPSPSRSPSPsrppPPADPSSPRKRPRPSRAPSSPAASAGR 384
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
307-442 |
1.15e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 307 DQLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVE 386
Cdd:PHA03307 793 EAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRR 872
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720405414 387 DrkekpvekpavSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSP 442
Cdd:PHA03307 873 R-----------PRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPMP 917
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
405-670 |
1.37e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 43.02 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 405 KSTESVSKASPCAPPSVPTTAAPPLP---KPLSTALLSPSPTLVLPNLANVDLAKISSILSSLTSVMKNTGVSSAsrPSP 481
Cdd:pfam17823 128 QSLPAAIAALPSEAFSAPRAAACRANasaAPRAAIAAASAPHAASPAPRTAASSTTAASSTTAASSAPTTAASSA--PAT 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 482 GIPTSPSNLSS-GLKTPAPATT----PSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTANPVPASE 556
Cdd:pfam17823 206 LTPARGISTAAtATGHPAAGTAlaavGNSSPAAGTVTAAVGTVTPAALATLAAAAGTVASAAGTINMGDPHARRLSPAKH 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 557 VTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTT---FKLPSSSlgft 633
Cdd:pfam17823 286 MPSDTMARNPAAPMGAQAQGPIIQVSTDQPVHNTAGEPTPSPSNTTLEPNTPKSVASTNLAVVTTTkaqAKEPSAS---- 361
|
250 260 270
....*....|....*....|....*....|....*..
gi 1720405414 634 gthnPSPaAPPTEVAvcqssevskpkPESESTSPSLE 670
Cdd:pfam17823 362 ----PVP-VLHTSMI-----------PEVEATSPTTQ 382
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
311-504 |
1.65e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.24 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 311 STLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDVEDMELSDVEDDGSKIIVEDRKE 390
Cdd:PHA03307 177 SSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECP 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 391 KPVEKPAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVLPNLANV------DLAKISSILSSL 464
Cdd:PHA03307 257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSsssresSSSSTSSSSESS 336
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1720405414 465 TSVMKNTGVSSASRPSPGIPTSPSNLSSGLKTPAPATTPS 504
Cdd:PHA03307 337 RGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPS 376
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
314-665 |
1.90e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 314 PDPEESPVPSPsmDAPSPTGSESP--FQGMGGEEPQSPAM----------ESDKSATPEP--------VTDNRDVEDmel 373
Cdd:PHA03247 2496 PDPGGGGPPDP--DAPPAPSRLAPaiLPDEPVGEPVHPRMltwirgleelASDDAGDPPPplppaappAAPDRSVPP--- 2570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 374 SDVEDDGSKIIVEDRKEKPVEKPAVSTGVPTKSTESVSKASPCAPPSVPTTAAPPLPKPlstallSPSP---TLVLPNLA 450
Cdd:PHA03247 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPP------SPSPaanEPDPHPPP 2644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 451 NVDLAKISSILSSLTSVMKNTGVSSASRPS-----------PGIPTSPSNLSSGLKTPAPATTPSHNPLAnilskveITP 519
Cdd:PHA03247 2645 TVPPPERPRDDPAPGRVSRPRRARRLGRAAqassppqrprrRAARPTVGSLTSLADPPPPPPTPEPAPHA-------LVS 2717
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 520 ESILSALSKTQTQSAPALQGLSSLLQSVTANPVPASE--VTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSS 597
Cdd:PHA03247 2718 ATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGParPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720405414 598 STSEVSSTSASKASVGQSPVLPSTTfkLPSsslgftgthnpSPAAPPTEVAVCQSSEVSKPKPESEST 665
Cdd:PHA03247 2798 LPSPWDPADPPAAVLAPAAALPPAA--SPA-----------GPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
312-669 |
2.81e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.47 E-value: 2.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 312 TLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEEPQSPAMESDKSATPEPVTDNRDvedmelSDVEDDGSKIIVEDRKEK 391
Cdd:PHA03307 69 TGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA------SPPPSPAPDLSEMLRPVG 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 392 PVEKPAVSTGVPTksteSVSKASPCAPPSVPTTAAPPLPKPLSTALLSPSPTLVLPNLANvdlakissilssltsvmknt 471
Cdd:PHA03307 143 SPGPPPAASPPAA----GASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTP-------------------- 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 472 gvSSASRPSPGIPTSPSNLSSGLKTPAPATTP-SHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVTAN 550
Cdd:PHA03307 199 --PAAASPRPPRRSSPISASASSPAPAPGRSAaDDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWN 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720405414 551 PvPASEVTSQSTTASPASTTGSAVKGRNLLSSTQSFIPKSFNYSPSSSTSEVSSTSASKASVGQSPVLPSTTFKLPSSSL 630
Cdd:PHA03307 277 G-PSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSR 355
|
330 340 350
....*....|....*....|....*....|....*....
gi 1720405414 631 GFTGTHNPSPAAPPTEVAVCQSSEVSKPKPESESTSPSL 669
Cdd:PHA03307 356 PPPPADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAV 394
|
|
| |
