|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-349 |
2.07e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.76 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 84 SLLCLLKDLSDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQ 163
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 164 SLETQIAkwNLQVKMNKQEAVAIKEASRQKAVALKKASKvyRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQF 243
Cdd:TIGR02168 751 QLSKELT--ELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRERL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 244 EKIAIEKTELEVQIETMKKQIANLLEDLRKME---THGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASV 320
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAaeiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260
....*....|....*....|....*....
gi 1720404261 321 ENELVELQEVEKRQKTLVEGYRTQVQKLQ 349
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLE 935
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
31-613 |
7.53e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.89 E-value: 7.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 31 EKHLSRLKQDVANTKMELKATLKEAQLASCSVELLLPLFKNTVEgiSLENIGDSLLCLLKDLSDNESENRN-LEEKVLEK 109
Cdd:pfam15921 263 QQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE--QARNQNSMYMRQLSDLESTVSQLRSeLREAKRMY 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 110 ETYIRELS---CLFQNE-KESALKANRLSQSVKVVHDRLQR---QIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQE 182
Cdd:pfam15921 341 EDKIEELEkqlVLANSElTEARTERDQFSQESGNLDDQLQKllaDLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 183 aVAIKEASRQKAVALKKASKVYRQrlrhftGDIERLASQVRDQEAKLSETVSASSDWKSQFE---KIAIEKTELEVQIET 259
Cdd:pfam15921 421 -LDDRNMEVQRLEALLKAMKSECQ------GQMERQMAAIQGKNESLEKVSSLTAQLESTKEmlrKVVEELTAKKMTLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 260 MKKQIANLLEDLRKMETHGKNSCEEILR-------KLHSLED-ENEALNIENVKLKgtLDALKDEVASvENELVEL--QE 329
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKlrsrvdlKLQELQHlKNEGDHLRNVQTE--CEALKLQMAE-KDKVIEIlrQQ 570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 330 VEKRQKTLVEGYRT----QVQKLQEAAEMVKSRCKnlLHENNLIITNKNKKLEKTVSCTSPLLLG-----NAVKAQVKAT 400
Cdd:pfam15921 571 IENMTQLVGQHGRTagamQVEKAQLEKEINDRRLE--LQEFKILKDKKDAKIRELEARVSDLELEkvklvNAGSERLRAV 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 401 KGRNRMRGQVesnLKQVEQARSSFTSaeqrLQECQEKLQR-CKEKCAEQALTIRELQGQVDGNQSLL-----TKLSLE-E 473
Cdd:pfam15921 649 KDIKQERDQL---LNEVKTSRNELNS----LSEDYEVLKRnFRNKSEEMETTTNKLKMQLKSAQSELeqtrnTLKSMEgS 721
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 474 ENHLIQLKC---ENLKEKLEQMDAenkeLEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEgRQKVSEEVEKMS 550
Cdd:pfam15921 722 DGHAMKVAMgmqKQITAKRGQIDA----LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATE-KNKMAGELEVLR 796
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720404261 551 SRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQhQAICLKeIQHSLEKSE------TRNESIKNYL 613
Cdd:pfam15921 797 SQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ-ESVRLK-LQHTLDVKElqgpgyTSNSSMKPRL 863
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
416-605 |
1.13e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 416 QVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEEnhliqlkcENLKEKLEQMDAE 495
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL--------EQLEREIERLERE 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 496 NKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQikilDLEAELRKKNEEQN 575
Cdd:COG4913 354 LEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALR----DLRRELRELEAEIA 429
|
170 180 190
....*....|....*....|....*....|
gi 1720404261 576 QLVDKMNTKTQHQAICLKEIQHSLEKSETR 605
Cdd:COG4913 430 SLERRKSNIPARLLALRDALAEALGLDEAE 459
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
112-574 |
2.94e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 2.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 112 YIRELSCLFQNEKESALKANRLsQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIKEASR 191
Cdd:COG4913 276 YLRAALRLWFAQRRLELLEAEL-EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 192 QKavaLKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKiaiEKTELEVQIETMKKQIANLLEDL 271
Cdd:COG4913 355 EE---RERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEE---ALAEAEAALRDLRRELRELEAEI 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 272 RKMETHGKNsceeILRKLHSLEDE-NEALNIENVKLKgtldalkdeVASvenELVELQEVEKRQKTLVEGY-RTQ----- 344
Cdd:COG4913 429 ASLERRKSN----IPARLLALRDAlAEALGLDEAELP---------FVG---ELIEVRPEEERWRGAIERVlGGFaltll 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 345 --VQKLQEAAEMVksrckNLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATKGRNRMRGQVES--------NL 414
Cdd:COG4913 493 vpPEHYAAALRWV-----NRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRrfdyvcvdSP 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 415 KQVEQARSSFT----------------------------SAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSL- 465
Cdd:COG4913 568 EELRRHPRAITragqvkgngtrhekddrrrirsryvlgfDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERr 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 466 -----LTKLSLEEENHL-IQLKCENLKEKLEQMDAEN---KELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALE 536
Cdd:COG4913 648 ealqrLAEYSWDEIDVAsAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEE 727
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 1720404261 537 EgRQKVSEEVEKMSSRERALQIKILD--LEAELRKKNEEQ 574
Cdd:COG4913 728 E-LDELQDRLEAAEDLARLELRALLEerFAAALGDAVERE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
123-353 |
1.20e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 123 EKESALKANRLSQSVKVVHDRLQ-RQIQKREAENEKLKEHVQSLETQIAKWNLQVkmnkQEAVAIKEASRQKAVALKKAS 201
Cdd:COG1196 208 QAEKAERYRELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAEL----AELEAELEELRLELEELELEL 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 202 KVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMEthgkNS 281
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE----AE 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720404261 282 CEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAE 353
Cdd:COG1196 360 LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
213-577 |
1.40e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 213 GDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEI------- 285
Cdd:PRK03918 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIeeleekv 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 286 --LRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKR---QKTLVEGYRTQVQKLQEAAEMVKSRCK 360
Cdd:PRK03918 283 keLKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 361 nlLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATKgrnrmrgQVESNLKQVEQARSSFTSAEQRLQECQEKLQR 440
Cdd:PRK03918 363 --LYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKE-------EIEEEISKITARIGELKKEIKELKKAIEELKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 441 CKEKCaeqALTIRELQGQVDGNqsLLTKLSLEEENhlIQLKCENLKEKLEQMDAENKELEKKLADQEECLKhsdleLKEK 520
Cdd:PRK03918 434 AKGKC---PVCGRELTEEHRKE--LLEEYTAELKR--IEKELKEIEEKERKLRKELRELEKVLKKESELIK-----LKEL 501
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720404261 521 AAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQIKILDLEAELRKKNEEQNQL 577
Cdd:PRK03918 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKL 558
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
165-556 |
1.51e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 165 LETQIAKWNLQVKMNKQEAVAikEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFE 244
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKI--AELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 245 KIAIEKTELEVQIETMKKQIANLLEDLrkmethgknscEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENEL 324
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEEL-----------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 325 VELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctspllLGNAVKAQVKATKGRN 404
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA------LLNERASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 405 RMRGQVESNLKQVEQARSsftSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqlkceN 484
Cdd:TIGR02168 894 SELEELSEELRELESKRS---ELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALEN--------K 962
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720404261 485 LKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEaALEEGRQKVSEEVEKMSSRERAL 556
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE-DLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
415-611 |
1.64e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.48 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 415 KQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqlkcenLKEKLEQMDA 494
Cdd:COG1196 267 AELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE---------LEEELEELEE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 495 ENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERALQiKILDLEAELRKKNEEQ 574
Cdd:COG1196 338 ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA-QLEELEEAEEALLERL 416
|
170 180 190
....*....|....*....|....*....|....*..
gi 1720404261 575 NQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKN 611
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
252-569 |
2.54e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 252 ELEVQIETMKKQIANLLEDLRKMETH---GKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQ 328
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRldeLSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVK 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 329 EVEKRQKTLVEGYRTQVQKLQEAAEMVKSRcknLLHENNLIITNKNKKLEKTVSctsplllgnavkaqvkatkgrnRMRG 408
Cdd:TIGR02169 758 SELKELEARIEELEEDLHKLEEALNDLEAR---LSHSRIPEIQAELSKLEEEVS----------------------RIEA 812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 409 QVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL-----SLEEENHLIQLKCE 483
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrDLESRLGDLKKERD 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 484 NLKEKLEQMDAENKELEKKLadqeECLKHSDLELKEKAAeytALSRQLEAALEEGRQKVSEEVEKMSsrERALQIKILDL 563
Cdd:TIGR02169 893 ELEAQLRELERKIEELEAQI----EKKRKRLSELKAKLE---ALEEELSEIEDPKGEDEEIPEEELS--LEDVQAELQRV 963
|
....*.
gi 1720404261 564 EAELRK 569
Cdd:TIGR02169 964 EEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
283-580 |
4.10e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 4.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 283 EEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKsrcKNL 362
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE---RQL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 363 LHENNLIITNKNKKLEKtvsctsplllgNAVKAQVKATKgrNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCK 442
Cdd:TIGR02168 319 EELEAQLEELESKLDEL-----------AEELAELEEKL--EELKEELESLEAELEELEAELEELESRLEELEEQLETLR 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 443 EKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhliqLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAA 522
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRER----LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720404261 523 EYTALSRQLEAALEEgRQKVSEEVEKMSSRERALQikilDLEAELRKKNEEQNQLVDK 580
Cdd:TIGR02168 462 ALEELREELEEAEQA-LDAAERELAQLQARLDSLE----RLQENLEGFSEGVKALLKN 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
387-590 |
5.67e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 5.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 387 LLLGNAVKAQVKATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLL 466
Cdd:COG4717 46 MLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 467 TKLSLEEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKhsdlELKEKAAEYTALSRQLEAALEEGRQKVSEEV 546
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEA----ELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1720404261 547 EKMSSRERALQIKILDLEAELRKKNEEQNQLVDKMNTKTQHQAI 590
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
71-606 |
1.03e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 71 NTVEGISLENIGDSLLCLLKDLsdnESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRlsqsvkvvhDRLQRQIQK 150
Cdd:pfam15921 208 DSMSTMHFRSLGSAISKILREL---DTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQ---------DRIEQLISE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 151 REAENEKLKEHVQSLETQIAKWNLQVKMNKQEAvaikeasrqkavalKKASKVYRQRLRHFTGDIERLASQVRDQ----E 226
Cdd:pfam15921 276 HEVEITGLTEKASSARSQANSIQSQLEIIQEQA--------------RNQNSMYMRQLSDLESTVSQLRSELREAkrmyE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 227 AKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMEthgknsceeilRKLHSLEDENEALNIENVKL 306
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKRE-----------KELSLEKEQNKRLWDRDTGN 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 307 KGTLDALKDEVasvenelvelqevekrqktlvEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSCTSP 386
Cdd:pfam15921 411 SITIDHLRREL---------------------DDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 387 LLLGNAVKAQVKATKGRNRMrgQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLL 466
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKM--TLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQ 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 467 T-----KLSLEEENHLIQL---KCENLKEKLEQ-------MDAENKELEKKLADQEECLKH------------------- 512
Cdd:pfam15921 548 TecealKLQMAEKDKVIEIlrqQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEfkilkdkkdakirelearv 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 513 SDLELkEKAAEYTALSRQLEAA--LEEGRQKVSEEVEKMSSRERALQIKILDLEAELRKKNEEqnqlvdkMNTKTQHQAI 590
Cdd:pfam15921 628 SDLEL-EKVKLVNAGSERLRAVkdIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEE-------METTTNKLKM 699
|
570
....*....|....*.
gi 1720404261 591 CLKEIQHSLEksETRN 606
Cdd:pfam15921 700 QLKSAQSELE--QTRN 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-617 |
1.77e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 404 NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL------------SL 471
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLeqqkqilrerlaNL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 472 EEENHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQ---LEAALEEGRQKVSE---E 545
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRleeLEEQLETLRSKVAQlelQ 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720404261 546 VEKMSSRERALQIKILDLEAELRKKNEEQNQLVDKM-NTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 617
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
94-610 |
1.90e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 94 DNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSvkvvhDRLQRQIQKREAENEKLKEHVQSLE-----TQ 168
Cdd:PTZ00121 1238 DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA-----DELKKAEEKKKADEAKKAEEKKKADeakkkAE 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 169 IAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAi 248
Cdd:PTZ00121 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK- 1391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 249 EKTELEVQIETMKKQIANL--LEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVE 326
Cdd:PTZ00121 1392 KADEAKKKAEEDKKKADELkkAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 327 LQEVEKR--QKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQ--VKATKG 402
Cdd:PTZ00121 1472 ADEAKKKaeEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEekKKADEL 1551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 403 RNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEkLQRCKEKCAEQALTIRELQGQVDGNQSlltKLSLEEENHLIQLKC 482
Cdd:PTZ00121 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE-AKKAEEARIEEVMKLYEEEKKMKAEEA---KKAEEAKIKAEELKK 1627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 483 ENLKEKLEQMDAENKELEKKLADQ----EECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRERAlqi 558
Cdd:PTZ00121 1628 AEEEKKKVEQLKKKEAEEKKKAEElkkaEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA--- 1704
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 1720404261 559 kildleAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIK 610
Cdd:PTZ00121 1705 ------EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
108-351 |
4.65e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.55 E-value: 4.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 108 EKETYIRELSCLFQNEKESALKANRLSQSVkvvhdrLQRQIQKREAENEKLkehVQSLETQIAKwnLQVKMNKQEAVAIK 187
Cdd:COG3206 132 VKGSNVIEISYTSPDPELAAAVANALAEAY------LEQNLELRREEARKA---LEFLEEQLPE--LRKELEEAEAALEE 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 188 EASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSE-------------TVSAS---SDWKSQFEKIAIEKT 251
Cdd:COG3206 201 FRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAAlraqlgsgpdalpELLQSpviQQLRAQLAELEAELA 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 252 ELEV-------QIETMKKQIANLLEDLRkmethgknscEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENEL 324
Cdd:COG3206 281 ELSArytpnhpDVIALRAQIAALRAQLQ----------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELE 350
|
250 260
....*....|....*....|....*..
gi 1720404261 325 VELQEVEKRQKTLVEGYRTQVQKLQEA 351
Cdd:COG3206 351 AELRRLEREVEVARELYESLLQRLEEA 377
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
427-614 |
4.69e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 427 AEQRLQECQEKLQRCK-------------EKCAEQALTIRELQGQ---VDGNQSLLTKLSLEEENHLIQLKCENLKEKLE 490
Cdd:COG1196 177 AERKLEATEENLERLEdilgelerqleplERQAEKAERYRELKEElkeLEAELLLLKLRELEAELEELEAELEELEAELE 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 491 QMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLE------AALEEGRQKVSEEVEKMSSRERALQIKILDLE 564
Cdd:COG1196 257 ELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArleqdiARLEERRRELEERLEELEEELAELEEELEELE 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1720404261 565 AELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQ 614
Cdd:COG1196 337 EELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
399-610 |
5.22e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 399 ATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVdgnqslltkLSLEEENHLI 478
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL---------TELEAEIEEL 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 479 QLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLeaaleegrQKVSEEVEKMSSRERALQI 558
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA--------ANLRERLESLERRIAATER 838
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1720404261 559 KILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIK 610
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA 890
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
142-574 |
5.69e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 142 DRLQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIKEAS---RQKAVALKKASKVYRQRLRHFTGDIERL 218
Cdd:PRK02224 310 EAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAeelREEAAELESELEEAREAVEDRREEIEEL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 219 ASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMET---HGK--------------NS 281
Cdd:PRK02224 390 EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleAGKcpecgqpvegsphvET 469
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 282 CEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASvENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKN 361
Cdd:PRK02224 470 IEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 362 LLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVKATkgRNRMRgQVESNLKQVEQARSSFTSAEQRLQECQEKLQRC 441
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER--IESLE-RIRTLLAAIADAEDEIERLREKREALAELNDER 625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 442 KEKCAEQALTIRELQGQVDGNQslLTKLSLEEENHLIQLkcENLKEKLEQMDAENKELEKKLADQEECLKhsdlELKEKA 521
Cdd:PRK02224 626 RERLAEKRERKRELEAEFDEAR--IEEAREDKERAEEYL--EQVEEKLDELREERDDLQAEIGAVENELE----ELEELR 697
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1720404261 522 AEYTALSRQLEAAleegrQKVSEEVEkmssrerALQIKILDLEAELRKKNEEQ 574
Cdd:PRK02224 698 ERREALENRVEAL-----EALYDEAE-------ELESMYGDLRAELRQRNVET 738
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
152-572 |
7.95e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 7.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 152 EAENEKLKEHVQSLETQIAKWN---LQVKMNKQEAVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAK 228
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELRdrlEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 229 LSETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNScEEILRKLHSLEDENE----ALNIENV 304
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA-RERVEEAEALLEAGKcpecGQPVEGS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 305 KLKGTLDALKDEVASVENELVELQEvekrQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSCT 384
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEE----EVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAE 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 385 SplllgnavkaqvkatkgrnrMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQgqvdgnqS 464
Cdd:PRK02224 541 E--------------------LRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-------R 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 465 LLTKLSLEEEnhlIQLKCENLKEKLEQMDAENKELEKKLADQEEclKHSDLELKEKAAEYTALSRQLEAAlEEGRQKVSE 544
Cdd:PRK02224 594 IRTLLAAIAD---AEDEIERLREKREALAELNDERRERLAEKRE--RKRELEAEFDEARIEEAREDKERA-EEYLEQVEE 667
|
410 420
....*....|....*....|....*...
gi 1720404261 545 EVEKMSSRERALQIKILDLEAELRKKNE 572
Cdd:PRK02224 668 KLDELREERDDLQAEIGAVENELEELEE 695
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
427-572 |
8.00e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.54 E-value: 8.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 427 AEQRLQECQEKLQRCKEKCA----EQALTIR-ELQGQVDGNQSLLTKLsleeENHLIQlKCENLKEKLEQMDAENKELEK 501
Cdd:PRK12704 40 AKRILEEAKKEAEAIKKEALleakEEIHKLRnEFEKELRERRNELQKL----EKRLLQ-KEENLDRKLELLEKREEELEK 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720404261 502 KladqEECLKHSDLELKEKAAEYTALSRQLEAALE--------EGRQKVSEEVEKMSSRERALQIKILDLEAELRKKNE 572
Cdd:PRK12704 115 K----EKELEQKQQELEKKEEELEELIEEQLQELErisgltaeEAKEILLEKVEEEARHEAAVLIKEIEEEAKEEADKK 189
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
91-580 |
8.01e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 8.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 91 DLSDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETqiA 170
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADA--A 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 171 KWNLQVKMNKQEAVAIKEASRQKAVALKKASKVYRQrlrhfTGDIERLASQVRD--------QEAKLSETVSASSDWKSQ 242
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKK-----ADEAKKKAEEKKKadeakkkaEEAKKADEAKKKAEEAKK 1458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 243 FEKiAIEKTELEVQIETMKKQI--ANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIEnvKLKGTLDALKDEVASV 320
Cdd:PTZ00121 1459 AEE-AKKKAEEAKKADEAKKKAeeAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE--EAKKADEAKKAEEAKK 1535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 321 ENELVELQEVEKRQKTlvegyrTQVQKLQEAAEMVKSRCKNLLHENNLIITNKN---KKLEKTVSCTSPLLLGNAVKAQV 397
Cdd:PTZ00121 1536 ADEAKKAEEKKKADEL------KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAeeaKKAEEARIEEVMKLYEEEKKMKA 1609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 398 KATKGRNRMRGQVESnLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHl 477
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEE-LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE- 1687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 478 iQLKCENLK---------EKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEEGRQKVSEEVEK 548
Cdd:PTZ00121 1688 -KKAAEALKkeaeeakkaEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE 1766
|
490 500 510
....*....|....*....|....*....|..
gi 1720404261 549 MSSRERALQIKILDLEAELRKKNEEQNQLVDK 580
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
405-617 |
1.46e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 405 RMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLsleeenhliQLKCEN 484
Cdd:TIGR02169 678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL---------EEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 485 LKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYtalsrqleaaLEEGRQKVSEEVEKMSSRERALQIKILDLE 564
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL----------SHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1720404261 565 AELRKKNEEQNQLVDKMNTKTQHQAIC---LKEIQHSLEKSETRNESIKNYLQFLQ 617
Cdd:TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLkeqIKSIEKEIENLNGKKEELEEELEELE 874
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
140-610 |
1.92e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.83 E-value: 1.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 140 VHDR-LQRQIQKREAENEKLKEHVQSLETQIAKWNLQVKMNKQEAVAIkeASRQKAValKKASKVYRQRLRHFTGDI--- 215
Cdd:pfam12128 227 IRDIqAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLI--ASRQEER--QETSAELNQLLRTLDDQWkek 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 216 -ERLASQVRDQEAKLS---ETVSASSDWKSQFEKIAIEKTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHS 291
Cdd:pfam12128 303 rDELNGELSAADAAVAkdrSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRS 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 292 LEDENealnienvklkgtldaLKDEVASVENELVELQEVEKRQKTLVEG-YRTQVQKLQEAAEMVKSRCKNLLHENNLII 370
Cdd:pfam12128 383 KIKEQ----------------NNRDIAGIKDKLAKIREARDRQLAVAEDdLQALESELREQLEAGKLEFNEEEYRLKSRL 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 371 TNKNKKLEKtVSCTSPLLLGNAVKAQVKatkgrNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQAL 450
Cdd:pfam12128 447 GELKLRLNQ-ATATPELLLQLENFDERI-----ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 451 TIRELQGQVDG------------------------NQSLLTKLSLEEENHLIQLKCEN----LKEKLEQMD-----AENK 497
Cdd:pfam12128 521 ALDELELQLFPqagtllhflrkeapdweqsigkviSPELLHRTDLDPEVWDGSVGGELnlygVKLDLKRIDvpewaASEE 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 498 ELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAALEE------GRQKVSEEVEKMSSRERALQIKILD-LEAELRKK 570
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREetfartALKNARLDLRRLFDEKQSEKDKKNKaLAERKDSA 680
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1720404261 571 NEEQNQLVDKMNT-KTQHQAICLKEIQHSLEKSETRNESIK 610
Cdd:pfam12128 681 NERLNSLEAQLKQlDKKHQAWLEEQKEQKREARTEKQAYWQ 721
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
78-564 |
2.26e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 78 LENIGDSLLCLLKDLSDNESENRNLEEKVLEKETYIRELsclfqnekesalkanrlsQSVKVVHDRLQRQIQKREAENEK 157
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL------------------EELKEEIEELEKELESLEGSKRK 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 158 LKEHVQSLETQIAKWNLQVKMNKQEAVAIKE--ASRQKAVALKKASKVYRQRLRhftgDIERLASQVRDQEAKLSETVSA 235
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDELR----EIEKRLSRLEEEINGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 236 SSDWKSQFEKIAIEKTELEVQIETMKK------QIANLLEDLRKMETH-GKNSCEEILRKLHSLEDENEALNIENVKLKG 308
Cdd:PRK03918 333 LEEKEERLEELKKKLKELEKRLEELEErhelyeEAKAKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEISKITA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 309 TLDALKDEVASVENELVELQEV------------EKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHEnnliitnkNKK 376
Cdd:PRK03918 413 RIGELKKEIKELKKAIEELKKAkgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKE--------LRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 377 LEKTVSCTSPLLLGNAVKAQVKATKGRNRMRG--QVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRE 454
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNleELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKK 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 455 LQGQVDGNQSLLTKL------SLEEENHLIQLKCENLKEKLEQMDAEN--KELEKKLADQEECLKHSDLELKEKAAEYTA 526
Cdd:PRK03918 565 LDELEEELAELLKELeelgfeSVEELEERLKELEPFYNEYLELKDAEKelEREEKELKKLEEELDKAFEELAETEKRLEE 644
|
490 500 510 520
....*....|....*....|....*....|....*....|..
gi 1720404261 527 LSRQLEAAL----EEGRQKVSEEVEKMSSRERALQIKILDLE 564
Cdd:PRK03918 645 LRKELEELEkkysEEEYEELREEYLELSRELAGLRAELEELE 686
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-581 |
3.38e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.90 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 404 NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENhlIQLKCE 483
Cdd:TIGR02169 290 LRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAE--LKEELE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 484 NLKEKLEQMDAENKELEKKLADQE---ECLKHSDLELKEKAAEYTALSRQLEAALEEGRQkvseEVEKMSSRERALQIKI 560
Cdd:TIGR02169 368 DLRAELEEVDKEFAETRDELKDYReklEKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEK 443
|
170 180
....*....|....*....|.
gi 1720404261 561 LDLEAELRKKNEEQNQLVDKM 581
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADL 464
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
183-358 |
3.68e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 183 AVAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIETMKK 262
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 263 QIANLLED----LRKMETHGKNSCEEIL----------RKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQ 328
Cdd:COG4942 98 ELEAQKEElaelLRALYRLGRQPPLALLlspedfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190
....*....|....*....|....*....|
gi 1720404261 329 EVEKRQKTLVEGYRTQVQKLQEAAEMVKSR 358
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKE 207
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
31-362 |
5.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 5.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 31 EKHLSRLKQDVANTKMELKATLKEAQLASCSVELL------LPLFKNTVEGIsLENIGDSLLCLLKDLSDNESENRNLEE 104
Cdd:TIGR02169 687 KRELSSLQSELRRIENRLDELSQELSDASRKIGEIekeieqLEQEEEKLKER-LEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 105 KVLEKETYI----RELSCLFQNEKESALK-ANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQIakwnlQVKMN 179
Cdd:TIGR02169 766 RIEELEEDLhkleEALNDLEARLSHSRIPeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI-----QELQE 840
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 180 KQEAVAIKEASRQKAVALKKAskvyrqRLRHFTGDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKTELEVQIET 259
Cdd:TIGR02169 841 QRIDLKEQIKSIEKEIENLNG------KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 260 MKKQIANLLEDLRKMETHGKnsceEILRKLHSLEDENEALNIENvKLKGTLDALKDEVASVE--NELV--ELQEVEKRQK 335
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELS----EIEDPKGEDEEIPEEELSLE-DVQAELQRVEEEIRALEpvNMLAiqEYEEVLKRLD 989
|
330 340
....*....|....*....|....*..
gi 1720404261 336 TLVEgyrtQVQKLQEAAEMVKSRCKNL 362
Cdd:TIGR02169 990 ELKE----KRAKLEEERKAILERIEEY 1012
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
409-617 |
7.47e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 7.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 409 QVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL--SLEEENHLIQLKCENLK 486
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAeaELAEAEEALLEAEAELA 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 487 EKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEA--ALEEGRQKVSEEVEKMSSRERALQIKILDLE 564
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEEleELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720404261 565 AELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 617
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
93-620 |
1.01e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 93 SDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVV------HDRLQRQIQKREAENEKLKEHVQSLE 166
Cdd:TIGR04523 159 NKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLkkkiqkNKSLESQISELKKQNNQLKDNIEKKQ 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 167 TQIAKWNLQVKMNKQEAVAIKEASRQKAVALKKASKvyrqRLRHFTGDIERLASQVRDQEAKLSETVSA-----SSDWKS 241
Cdd:TIGR04523 239 QEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK----ELEQNNKKIKELEKQLNQLKSEISDLNNQkeqdwNKELKS 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 242 QFEKIAIEKTELEVQIETMKKQIANL---LEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVA 318
Cdd:TIGR04523 315 ELKNQEKKLEEIQNQISQNNKIISQLneqISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 319 SVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRcknLLHENNLIITNKNKKLEKTVSCTSPLLLGNAVKAQVK 398
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET---IIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 399 ATKGR-NRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEENHL 477
Cdd:TIGR04523 472 VLSRSiNKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDD 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 478 IQLKCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAaLEEGRQKVSEEVEKMSSRERALQ 557
Cdd:TIGR04523 552 FELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE-KEKKISSLEKELEKAKKENEKLS 630
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720404261 558 IKILDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQISY 620
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKELSLHY 693
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
416-586 |
1.25e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 41.94 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 416 QVEQARSSFTSAEQRLQECQEKLQrckekcAEQALTIRELQGQVDGNQSLLTKLSLEEENhlIQLKCENLKEKLEQMDAE 495
Cdd:pfam05667 307 QFTNEAPAATSSPPTKVETEEELQ------QQREEELEELQEQLEDLESSIQELEKEIKK--LESSIKQVEEELEELKEQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 496 NKELEKK----------LADQEECLKHSDLELKEKAAEYTALSRQLEAA----LEEGRQKVSEEVEKMSSRER------A 555
Cdd:pfam05667 379 NEELEKQykvkkktldlLPDAEENIAKLQALVDASAQRLVELAGQWEKHrvplIEEYRALKEAKSNKEDESQRkleeikE 458
|
170 180 190
....*....|....*....|....*....|.
gi 1720404261 556 LQIKILDLEAELRKKNEEQNQLVDKMNTKTQ 586
Cdd:pfam05667 459 LREKIKEVAEEAKQKEELYKQLVAEYERLPK 489
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-438 |
1.38e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 214 DIERLASQVRDQEAKLSETVSASSDWKSQFEKI-------AIEKTELEVQIETMKKQIANLLEDLRKMET---HGKNSCE 283
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELqkelyalANEISRLEQQKQILRERLANLERQLEELEAqleELESKLD 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 284 EILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVELQEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLL 363
Cdd:TIGR02168 334 ELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1720404261 364 HENNLIITNK---NKKLEKTVSCTSPLLLGNAVKAQVKATKGRNRMRGQVESNLKQVEQARSSFTSAEQRLQECQEKL 438
Cdd:TIGR02168 414 DRRERLQQEIeelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
409-577 |
1.44e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 409 QVESNLKQVEQARSSF-------------TSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSleeEN 475
Cdd:COG3206 186 ELRKELEEAEAALEEFrqknglvdlseeaKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL---QS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 476 HLIQlkceNLKEKLEQMDAENKELEKKLADQeeclkHSDL-ELKEKAAEytaLSRQLEAALEEGRQKVSEEVEKMSSRER 554
Cdd:COG3206 263 PVIQ----QLRAQLAELEAELAELSARYTPN-----HPDViALRAQIAA---LRAQLQQEAQRILASLEAELEALQAREA 330
|
170 180
....*....|....*....|...
gi 1720404261 555 ALQIKILDLEAELRKKNEEQNQL 577
Cdd:COG3206 331 SLQAQLAQLEARLAELPELEAEL 353
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
407-617 |
1.60e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 407 RGQVESNL----KQVEQARSSFT-SAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLS-LEEENHLIQL 480
Cdd:COG1196 195 LGELERQLepleRQAEKAERYRElKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAeLEAELEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 481 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEKAAEYTALSRQLEAaLEEGRQKVSEEVEKMSSRERALQIKI 560
Cdd:COG1196 275 ELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720404261 561 LDLEAELRKKNEEQNQLVDKMNTKTQHQAICLKEIQHSLEKSETRNESIKNYLQFLQ 617
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEE 410
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
481-582 |
1.60e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 481 KCENLKEKLEQMDAENKELEKKLADQEECLKHSDLELKEkaaeytalsrqleaALEEGRQKVSEEvEKMSSRERalqiKI 560
Cdd:COG2433 414 EIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSE--------------ARSEERREIRKD-REISRLDR----EI 474
|
90 100
....*....|....*....|..
gi 1720404261 561 LDLEAELRKKNEEQNQLVDKMN 582
Cdd:COG2433 475 ERLERELEEERERIEELKRKLE 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
120-460 |
2.46e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 120 FQNEKESALK----ANRLSQSVKVVHDRLQRQIQKREAENEKlKEHVQSLETQIAKWNLQVKMNKqeavaIKEASRQKAV 195
Cdd:TIGR02169 168 FDRKKEKALEeleeVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYELLKE-----KEALERQKEA 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 196 ALKKASKVyRQRLRHFTGDIERLASQVRDQEAKLSEtVSASSDWKSQFEKIAIEKT--ELEVQIETMKKQIANLLEDLRK 273
Cdd:TIGR02169 242 IERQLASL-EEELEKLTEEISELEKRLEEIEQLLEE-LNKKIKDLGEEEQLRVKEKigELEAEIASLERSIAEKERELED 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 274 METHGKNSCEEILRKLHSLEDENEALNIENVKLkgtlDALKDEVASVENEL----VELQEVEKRQKTLvegyRTQVQKLQ 349
Cdd:TIGR02169 320 AEERLAKLEAEIDKLLAEIEELEREIEEERKRR----DKLTEEYAELKEELedlrAELEEVDKEFAET----RDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 350 EAAEMVKsrcknllHENNLIITNKNKKLEKTVSCTSPLLLGNA----VKAQVKATKGRNR-MRGQVESNLKQVEQARSSF 424
Cdd:TIGR02169 392 EKLEKLK-------REINELKRELDRLQEELQRLSEELADLNAaiagIEAKINELEEEKEdKALEIKKQEWKLEQLAADL 464
|
330 340 350
....*....|....*....|....*....|....*.
gi 1720404261 425 TSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVD 460
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQAR 500
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
485-568 |
2.65e-03 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 40.45 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 485 LKEKLEQMDAENKELEKKLA------DQEECLK----HSDLE-LKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSRE 553
Cdd:PRK00591 4 MLDKLEALEERYEELEALLSdpevisDQKRFRKlskeYAELEpIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEE 83
|
90
....*....|....*.
gi 1720404261 554 -RALQIKILDLEAELR 568
Cdd:PRK00591 84 lKELEERLEELEEELK 99
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
120-582 |
3.59e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.42 E-value: 3.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 120 FQNEKESALKANRLSQSVKVVHDRL---QRQIQKREAENEKLKEHVQSLETQIAKW-----------NLQVKMNKQEAvA 185
Cdd:TIGR00606 569 FPNKKQLEDWLHSKSKEINQTRDRLaklNKELASLEQNKNHINNELESKEEQLSSYedklfdvcgsqDEESDLERLKE-E 647
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 186 IKEASRQKAVaLKKASKVYRQRLRHFTGDIE--------------RLASQVRDQEAKLSETVSASSDWKSQFEKIAIEKT 251
Cdd:TIGR00606 648 IEKSSKQRAM-LAGATAVYSQFITQLTDENQsccpvcqrvfqteaELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRD 726
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 252 ELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDeVASVENELVELQEVE 331
Cdd:TIGR00606 727 EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTD-VTIMERFQMELKDVE 805
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 332 KRQKtlvegyrtqvqklQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctsplllgnAVKAQVKATKGRNRMRGQVE 411
Cdd:TIGR00606 806 RKIA-------------QQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVS---------KIELNRKLIQDQQEQIQHLK 863
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 412 SNLKQVEQARSSFTSAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKL---------SLEEENHLIQLKC 482
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDqqekeelisSKETSNKKAQDKV 943
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 483 ENLKEKLEQMDAENKELEKKLADQEeclkhsDLELKEKAAEYTALSRQLEAAlEEGRQKVSEEVEKMSS-------RERA 555
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGK------DDYLKQKETELNTVNAQLEEC-EKHQEKINEDMRLMRQdidtqkiQERW 1016
|
490 500
....*....|....*....|....*....
gi 1720404261 556 LQ--IKILDLEAELRKKNEEQNQLVDKMN 582
Cdd:TIGR00606 1017 LQdnLTLRKRENELKEVEEELKQHLKEMG 1045
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
90-366 |
3.70e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 90 KDLSDNESENRNLEEKVLEKETYIRELSCLFQNEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQI 169
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQI 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 170 AKWNLQVKMNKQEavaikeaSRQKAVALKKASKVYRQRLRhftgDIERLASQVRDQEAKLSETVSASSDWKSQFEKIAIE 249
Cdd:TIGR04523 394 NDLESKIQNQEKL-------NQQKDEQIKKLQQEKELLEK----EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNT 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 250 KTELEVQIETMKKQIANLLEDLRKMETHGKNSCEEIL---RKLHSLEDENEALNIENVKLKGTLDALKDEVASVENELVE 326
Cdd:TIGR04523 463 RESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKklnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1720404261 327 LQEVEKRQKTLV--EGYRTQVQKLQEAAEMVKSRCKNLLHEN 366
Cdd:TIGR04523 543 LEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
89-537 |
4.57e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 89 LKDLSDNESENRNLEEKVLEKETYIRELSclfqnEKESALKANRLSQSVKVVHDRLQRQIQKREAENEKLKEHVQSLETQ 168
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELE-----AELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 169 IAKW-NLQVKMNKQEAvAIKEASRQKAVALKKASKVYRQRLRHFTGDIERLASQVRDQEAKLSetvsassdwksqfekia 247
Cdd:COG4717 155 LEELrELEEELEELEA-ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE----------------- 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 248 iektELEVQIETMKKQIANLLEDLRKMETHGKNSCEEILRKLHSLEDENEALNIENVKLKGTLDALKDEVASVeneLVEL 327
Cdd:COG4717 217 ----EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGL---LALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 328 QEVEKRQKTLVEGYRTQVQKLQEAAEMVKSRCKNLLHENNLIITNKNKKLEKTVSctsplLLGNAVKAQVKATKGRNRMR 407
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLD-----RIEELQELLREAEELEEELQ 364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 408 GQVESNLKQVEQARSSFTSAEQrLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTKLSLEEenhlIQLKCENLKE 487
Cdd:COG4717 365 LEELEQEIAALLAEAGVEDEEE-LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEE----LEEELEELEE 439
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1720404261 488 KLEQMDAENKELEKKLADQEECLKH--SDLELKEKAAEYTALSRQLEAALEE 537
Cdd:COG4717 440 ELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEE 491
|
|
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
484-568 |
5.55e-03 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 39.21 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 484 NLKEKLEQMDAENKELEKKLADQE---------ECLK-HSDLE-LKEKAAEYTALSRQLEAALEEGRQKVSEEVEKMSSR 552
Cdd:COG0216 1 SMLDKLEALEERYEELEALLSDPEvisdqkrfrKLSKeYAELEpIVEAYREYKKLLEDIEEAKELLEEESDPEMREMAKE 80
|
90
....*....|....*..
gi 1720404261 553 E-RALQIKILDLEAELR 568
Cdd:COG0216 81 ElEELEARLEELEEELK 97
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
395-572 |
5.97e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 39.29 E-value: 5.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 395 AQVKATKGRNRMRGQVESNLKQVEQARSSftsAEQRLQECQEKLQRCKEKCAEQALTIRELQGQVDGNQSLLTK------ 468
Cdd:PRK11637 58 AKEKSVRQQQQQRASLLAQLKKQEEAISQ---ASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAqldaaf 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720404261 469 -----------LSLEEE-------------NHLIQLKCENLKEKLEQMDAENKELEKKLADQEECLkhSDLELKEKAAEY 524
Cdd:PRK11637 135 rqgehtglqliLSGEESqrgerilayfgylNQARQETIAELKQTREELAAQKAELEEKQSQQKTLL--YEQQAQQQKLEQ 212
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1720404261 525 TALSRQ-----LEAALEEGRQKVSEevekMSSRERALQIKILDLEAELRKKNE 572
Cdd:PRK11637 213 ARNERKktltgLESSLQKDQQQLSE----LRANESRLRDSIARAEREAKARAE 261
|
|
| |
