|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_ED |
cd00038 |
effector domain of the CAP family of transcription factors; members include CAP (or cAMP ... |
123-231 |
1.61e-26 |
|
effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels
Pssm-ID: 237999 [Multi-domain] Cd Length: 115 Bit Score: 103.56 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 123 LFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTR-----LTDGSYFGEICLLTRGRR 197
Cdd:cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREqivgfLGPGDLFGELALLGNGPR 80
|
90 100 110
....*....|....*....|....*....|....
gi 1720403217 198 TASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAF 231
Cdd:cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114
|
|
| cNMP |
smart00100 |
Cyclic nucleotide-monophosphate binding domain; Catabolite gene activator protein (CAP) is a ... |
123-232 |
5.88e-19 |
|
Cyclic nucleotide-monophosphate binding domain; Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Pssm-ID: 197516 [Multi-domain] Cd Length: 120 Bit Score: 82.45 E-value: 5.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 123 LFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRGRR 197
Cdd:smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGeeqivGTLGPGDFFGELALLTNSRR 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1720403217 198 TASVRADTY--CRLYSLSVDHFNAVLEEFPMMRRAFE 232
Cdd:smart00100 81 AASAAAVALelATLLRIDFRDFLQLLPELPQLLLELL 117
|
|
| Crp |
COG0664 |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal ... |
124-255 |
1.35e-18 |
|
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms];
Pssm-ID: 440428 [Multi-domain] Cd Length: 207 Bit Score: 83.88 E-value: 1.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 124 FAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTRLT-----DGSYFGEICLLTRGRRT 198
Cdd:COG0664 1 FAGLSDEELEALLAHLELRTLKKGEVLFREGDPADHLYFVLSGLVKLYRISEDGREQIlgflgPGDFFGELSLLGGEPSP 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720403217 199 ASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLRRIGKKNSILQRKRSE 255
Cdd:COG0664 81 ATAEALEDSELLRIPREDLEELLERNPELARALLRLLARRLRQLQERLVSLAFLSAE 137
|
|
| cNMP_binding |
pfam00027 |
Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, ... |
141-223 |
4.71e-17 |
|
Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://0-doi-org.brum.beds.ac.uk/10.1093/femsre/fuab043).
Pssm-ID: 459637 [Multi-domain] Cd Length: 89 Bit Score: 76.11 E-value: 4.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 141 FEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVD 215
Cdd:pfam00027 1 LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGreqilAVLGPGDFFGELALLGGEPRSATVVALTDSELLVIPRE 80
|
....*...
gi 1720403217 216 HFNAVLEE 223
Cdd:pfam00027 81 DFLELLER 88
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
300-467 |
2.76e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.32 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 300 PLVHAPLQAAAVTSNVAIALTHQRGPLPLSPdSPATLLARSARRSAGSPASPLVP----VRAGPLLARGPWASTSRLPAP 375
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLggsvAPGGDVRRRPPSRSPAAKPAA 2877
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 376 PARTLHASLSRTGRSQVSLLGP-PPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPP----------SG 444
Cdd:PHA03247 2878 PARPPVRRLARPAVSRSTESFAlPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPttdpagagepSG 2957
|
170 180
....*....|....*....|....*....
gi 1720403217 445 LLAKP------PGTVQPPRSSVPEPVTPR 467
Cdd:PHA03247 2958 AVPQPwlgalvPGRVAVPRFRVPQPAPSR 2986
|
|
| PRK11753 |
PRK11753 |
cAMP-activated global transcriptional regulator CRP; |
150-245 |
9.10e-04 |
|
cAMP-activated global transcriptional regulator CRP;
Pssm-ID: 236969 [Multi-domain] Cd Length: 211 Bit Score: 40.74 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 150 VVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRG-RRTASVRADTYCRLYSLSVDHFNAVLEE 223
Cdd:PRK11753 31 LIHAGEKAETLYYIVKGSVAVLIKDEEGkemilSYLNQGDFIGELGLFEEGqERSAWVRAKTACEVAEISYKKFRQLIQV 110
|
90 100
....*....|....*....|..
gi 1720403217 224 FPMMRRAFETVAMDRLRRIGKK 245
Cdd:PRK11753 111 NPDILMALSAQMARRLQNTSRK 132
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_ED |
cd00038 |
effector domain of the CAP family of transcription factors; members include CAP (or cAMP ... |
123-231 |
1.61e-26 |
|
effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels
Pssm-ID: 237999 [Multi-domain] Cd Length: 115 Bit Score: 103.56 E-value: 1.61e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 123 LFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTR-----LTDGSYFGEICLLTRGRR 197
Cdd:cd00038 1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREqivgfLGPGDLFGELALLGNGPR 80
|
90 100 110
....*....|....*....|....*....|....
gi 1720403217 198 TASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAF 231
Cdd:cd00038 81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL 114
|
|
| cNMP |
smart00100 |
Cyclic nucleotide-monophosphate binding domain; Catabolite gene activator protein (CAP) is a ... |
123-232 |
5.88e-19 |
|
Cyclic nucleotide-monophosphate binding domain; Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Pssm-ID: 197516 [Multi-domain] Cd Length: 120 Bit Score: 82.45 E-value: 5.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 123 LFAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRGRR 197
Cdd:smart00100 1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGeeqivGTLGPGDFFGELALLTNSRR 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 1720403217 198 TASVRADTY--CRLYSLSVDHFNAVLEEFPMMRRAFE 232
Cdd:smart00100 81 AASAAAVALelATLLRIDFRDFLQLLPELPQLLLELL 117
|
|
| Crp |
COG0664 |
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal ... |
124-255 |
1.35e-18 |
|
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms];
Pssm-ID: 440428 [Multi-domain] Cd Length: 207 Bit Score: 83.88 E-value: 1.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 124 FAHADPSFVTAVLTKLRFEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARDTRLT-----DGSYFGEICLLTRGRRT 198
Cdd:COG0664 1 FAGLSDEELEALLAHLELRTLKKGEVLFREGDPADHLYFVLSGLVKLYRISEDGREQIlgflgPGDFFGELSLLGGEPSP 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1720403217 199 ASVRADTYCRLYSLSVDHFNAVLEEFPMMRRAFETVAMDRLRRIGKKNSILQRKRSE 255
Cdd:COG0664 81 ATAEALEDSELLRIPREDLEELLERNPELARALLRLLARRLRQLQERLVSLAFLSAE 137
|
|
| cNMP_binding |
pfam00027 |
Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, ... |
141-223 |
4.71e-17 |
|
Cyclic nucleotide-binding domain; This domain sensor domain can bind cAMP, cGMP, c-di-GMP, oxygen and 2-oxoglutarate (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://0-doi-org.brum.beds.ac.uk/10.1093/femsre/fuab043).
Pssm-ID: 459637 [Multi-domain] Cd Length: 89 Bit Score: 76.11 E-value: 4.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 141 FEVFQPGDLVVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVD 215
Cdd:pfam00027 1 LRSYKAGEVIFREGDPADSLYIVLSGKVKVYRTLEDGreqilAVLGPGDFFGELALLGGEPRSATVVALTDSELLVIPRE 80
|
....*...
gi 1720403217 216 HFNAVLEE 223
Cdd:pfam00027 81 DFLELLER 88
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
300-467 |
2.76e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 50.32 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 300 PLVHAPLQAAAVTSNVAIALTHQRGPLPLSPdSPATLLARSARRSAGSPASPLVP----VRAGPLLARGPWASTSRLPAP 375
Cdd:PHA03247 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLP-PPTSAQPTAPPPPPGPPPPSLPLggsvAPGGDVRRRPPSRSPAAKPAA 2877
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 376 PARTLHASLSRTGRSQVSLLGP-PPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPP----------SG 444
Cdd:PHA03247 2878 PARPPVRRLARPAVSRSTESFAlPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPttdpagagepSG 2957
|
170 180
....*....|....*....|....*....
gi 1720403217 445 LLAKP------PGTVQPPRSSVPEPVTPR 467
Cdd:PHA03247 2958 AVPQPwlgalvPGRVAVPRFRVPQPAPSR 2986
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
281-469 |
3.79e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 3.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 281 RGLAPGTGARLSGKPVLWEPlvhaPLQAAAVTSNVAIALTHQRGPLPLSPDSPATllarsarrsagsPASPLVPvraGPL 360
Cdd:PHA03247 2666 RARRLGRAAQASSPPQRPRR----RAARPTVGSLTSLADPPPPPPTPEPAPHALV------------SATPLPP---GPA 2726
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 361 LARGPWASTSRLPAPPAR----TLHASLSRTGRSQVSLLGP-------PPGGGARRL-GPRGRPLSASQPSLPQRATGDG 428
Cdd:PHA03247 2727 AARQASPALPAAPAPPAVpagpATPGGPARPARPPTTAGPPapappaaPAAGPPRRLtRPAVASLSESRESLPSPWDPAD 2806
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1720403217 429 SPRRKGSGSERLPPSgllAKPPGTVQPPRSSVP-EPVTPRGP 469
Cdd:PHA03247 2807 PPAAVLAPAAALPPA---ASPAGPLPPPTSAQPtAPPPPPGP 2845
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
283-470 |
2.02e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 47.63 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 283 LAPGTGARLSGKPVLwePLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPAtllarSARRSAGSPASPLVPVRAGPLLA 362
Cdd:PHA03247 2721 LPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPA-----PPAAPAAGPPRRLTRPAVASLSE 2793
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 363 RGPWASTSRLPAPPARTLHASLSRTGRSQVSLLGPPPGGGARRLGPrGRPLSASQPSLPQratgDGSPRRKGSGSERLPP 442
Cdd:PHA03247 2794 SRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAP-PPPPGPPPPSLPL----GGSVAPGGDVRRRPPS 2868
|
170 180
....*....|....*....|....*...
gi 1720403217 443 SGLLAKPPGTVQPPRSSVPEPVTPRGPQ 470
Cdd:PHA03247 2869 RSPAAKPAAPARPPVRRLARPAVSRSTE 2896
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
281-470 |
8.62e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 8.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 281 RGLAPGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAialthQRGPLPLSPDSPATllaRSARRSAGSPASPLVPVRAGPL 360
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAP-----APAGAAAAPAEASA---APAPGVAAPEHHPKHVAVPDAS 663
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 361 LARGPWASTSRLPAPPARTlhASLSRTGRSQVSLLGPPPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERL 440
Cdd:PRK07764 664 DGGDGWPAKAGGAAPAAPP--PAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPL 741
|
170 180 190
....*....|....*....|....*....|
gi 1720403217 441 PPSGLLakPPGTVQPPRSSVPEPVTPRGPQ 470
Cdd:PRK07764 742 PPEPDD--PPDPAGAPAQPPPPPAPAPAAA 769
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
283-473 |
2.60e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 283 LAPGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSARRSAGSPASPLVPV-----RA 357
Cdd:PRK12323 363 FRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAarqasAR 442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 358 GPLLARGPWASTSRLPAPPARTLHASLSRTGRSQVSLLGPPPGGGARRLGPRGRPLSASQP-SLPQRATGDGSPRRKGSG 436
Cdd:PRK12323 443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPpEFASPAPAQPDAAPAGWV 522
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1720403217 437 SERLPPSGLL----AKPPGTVQPPRSSVPEPVTPRGPQISA 473
Cdd:PRK12323 523 AESIPDPATAdpddAFETLAPAPAAAPAPRAAAATEPVVAP 563
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
284-470 |
3.18e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.39 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 284 APGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSARRSA----GSPASPLVP----V 355
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAAlppaASPAGPLPPptsaQ 2835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 356 RAGPLLARGPWASTsrLPAPPARTLHASLSRTGRSQvsllgPPPGGGARRLGPRGRPLSA---SQPSLPQRATGDGSPRR 432
Cdd:PHA03247 2836 PTAPPPPPGPPPPS--LPLGGSVAPGGDVRRRPPSR-----SPAAKPAAPARPPVRRLARpavSRSTESFALPPDQPERP 2908
|
170 180 190
....*....|....*....|....*....|....*...
gi 1720403217 433 KGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQ 470
Cdd:PHA03247 2909 PQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPT 2946
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
323-475 |
7.69e-04 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 7.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 323 RGPLPLSPDSPATLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRLPAPPARTLhASLSRTGRSQVSLLGPPPGGG 402
Cdd:PHA03307 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPL-SSPEETARAPSSPPAEPPPST 197
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1720403217 403 ARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQISANM 475
Cdd:PHA03307 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW 270
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
322-473 |
8.15e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 41.98 E-value: 8.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 322 QRGPLPLSPDSPATLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRLPAPPaRTLHASLSRTGRSQVSLLGPPPGG 401
Cdd:PHA03378 622 RQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQP-SPTGANTMLPIQWAPGTMQPPPRA 700
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720403217 402 GARRLGPRGRPlSASQPslPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQISA 473
Cdd:PHA03378 701 PTPMRPPAAPP-GRAQR--PAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAA 769
|
|
| PRK11753 |
PRK11753 |
cAMP-activated global transcriptional regulator CRP; |
150-245 |
9.10e-04 |
|
cAMP-activated global transcriptional regulator CRP;
Pssm-ID: 236969 [Multi-domain] Cd Length: 211 Bit Score: 40.74 E-value: 9.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 150 VVREGSVGRKMYFIQHGLLSVLARGARD-----TRLTDGSYFGEICLLTRG-RRTASVRADTYCRLYSLSVDHFNAVLEE 223
Cdd:PRK11753 31 LIHAGEKAETLYYIVKGSVAVLIKDEEGkemilSYLNQGDFIGELGLFEEGqERSAWVRAKTACEVAEISYKKFRQLIQV 110
|
90 100
....*....|....*....|..
gi 1720403217 224 FPMMRRAFETVAMDRLRRIGKK 245
Cdd:PRK11753 111 NPDILMALSAQMARRLQNTSRK 132
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
300-469 |
9.34e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 9.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 300 PLVHAPLQAAAVTSnvaiALTHQRGPLPLSPdspaTLLARSARRSA-GSPASPLVPVrAGPLLARGPWASTSRLPAPPAR 378
Cdd:PHA03247 2554 PLPPAAPPAAPDRS----VPPPRPAPRPSEP----AVTSRARRPDApPQSARPRAPV-DDRGDPRGPAPPSPLPPDTHAP 2624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 379 TLHASLSRTGRSQvsllgpPPGGGARRLGPRGRPLSASQP---SLPQRATGDGSPRRKGSGSERLPPSGL---------L 446
Cdd:PHA03247 2625 DPPPPSPSPAANE------PDPHPPPTVPPPERPRDDPAPgrvSRPRRARRLGRAAQASSPPQRPRRRAArptvgsltsL 2698
|
170 180
....*....|....*....|...
gi 1720403217 447 AKPPGTVQPPRSSvPEPVTPRGP 469
Cdd:PHA03247 2699 ADPPPPPPTPEPA-PHALVSATP 2720
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
255-469 |
1.84e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 40.99 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 255 EPSPGSSGGVMEQHLVQhdrdMARGVRGLAPGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPA 334
Cdd:PRK07003 359 EPAVTGGGAPGGGVPAR----VAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 335 TLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRL-------PAPPARTLHASLSRTGRSQVSLLGPPPGGGARRLG 407
Cdd:PRK07003 435 TADRGDDAADGDAPVPAKANARASADSRCDERDAQPPAdsgsasaPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPA 514
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 408 PRGR-----PLSASQPSLPQRATGDGSPRRKGSG----------------SERLPPSGLLAKPPG------TVQPPRSSV 460
Cdd:PRK07003 515 AASRedapaAAAPPAPEARPPTPAAAAPAARAGGaaaaldvlrnagmrvsSDRGARAAAAAKPAAapaaapKPAAPRVAV 594
|
....*....
gi 1720403217 461 PEPvTPRGP 469
Cdd:PRK07003 595 QVP-TPRAR 602
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
295-473 |
2.25e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 40.54 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 295 PVLWEPLVHAPLQAAAVTSNVAIALT-HQRGPLPLSPDSPATLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRLP 373
Cdd:PHA03307 35 LLSGSQGQLVSDSAELAAVTVVAGAAaCDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSP 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 374 APPARTlhaslsrtgrsQVSLLGPPPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTV 453
Cdd:PHA03307 115 DPPPPT-----------PPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETA 183
|
170 180
....*....|....*....|
gi 1720403217 454 QPPrSSVPEPVTPRGPQISA 473
Cdd:PHA03307 184 RAP-SSPPAEPPPSTPPAAA 202
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
317-473 |
2.93e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 40.08 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 317 IALtHQRGPLPLSPDSPA----TLLARSARRSAGSPASPLVPVRAGPllargpwastsrlpAPPARTLHASLSRTGRSQV 392
Cdd:PRK14951 336 ICL-HGRAELGLAPDEYAaltmVLLRLLAFKPAAAAEAAAPAEKKTP--------------ARPEAAAPAAAPVAQAAAA 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 393 SLLGPPPGGGARrlgPRGRPLSASQPSLPQR--ATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQ 470
Cdd:PRK14951 401 PAPAAAPAAAAS---APAAPPAAAPPAPVAApaAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAP 477
|
...
gi 1720403217 471 ISA 473
Cdd:PRK14951 478 APA 480
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
326-475 |
4.34e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.58 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 326 LPLSPDSPATLLARSARRSAGSPAsplvpvrAGPLLARGPWASTSRLPAPPArtlhaslsrtgrsqvsllGPPPGGGARR 405
Cdd:PRK07764 364 LPSASDDERGLLARLERLERRLGV-------AGGAGAPAAAAPSAAAAAPAA------------------APAPAAAAPA 418
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 406 LGPRGRPLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQISANM 475
Cdd:PRK07764 419 AAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAP 488
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
299-469 |
5.34e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 39.54 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 299 EPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSARRSAGSPASPLVPVRAGPLLARGPWASTSRL--PAPP 376
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLadPPPP 2704
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 377 ARTLHASlsrtGRSQVSLLGPPPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKG-----SGSER-LPPSGLLAKPP 450
Cdd:PHA03247 2705 PPTPEPA----PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPArppttAGPPApAPPAAPAAGPP 2780
|
170
....*....|....*....
gi 1720403217 451 GTVQPPRSSVPEPVTPRGP 469
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLP 2799
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
258-469 |
5.46e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.47 E-value: 5.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 258 PGSSGGvmeqhlvqhDRDMARGVRGLAPGTGARLSGKPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLL 337
Cdd:PRK12323 365 PGQSGG---------GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAA 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 338 ARSA------RRSAGSPASPLVPVRAGPllargPWASTSRLPAPPARTLHASLSRTGRSQVSLLGPPPgggARRLGPRGR 411
Cdd:PRK12323 436 ARQAsargpgGAPAPAPAPAAAPAAAAR-----PAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPP---WEELPPEFA 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720403217 412 PLSASQPSLPQRATGDGSPRRKGSGSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGP 469
Cdd:PRK12323 508 SPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
321-470 |
6.60e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 39.09 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 321 HQRGPLPLSPDSPA----TLLARSARRSAGS--PASPlVPVRAGPLLARGPWASTSRlPAPPARTlHASLSRTGRSQVSL 394
Cdd:PRK12323 338 LGRSELALAPDEYAgftmTLLRMLAFRPGQSggGAGP-ATAAAAPVAQPAPAAAAPA-AAAPAPA-APPAAPAAAPAAAA 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 395 LGPPPGGGARRLGPRGRPLSASQPSLPQRATGDGSPRRKGS----GSERLPPSGLLAKPPGTVQPPRSSVPEPVTPRGPQ 470
Cdd:PRK12323 415 AARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAaapaAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADD 494
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
281-468 |
9.27e-03 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 38.51 E-value: 9.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 281 RGLAPGTGARLSGkPVLWEPLVHAPLQAAAVTSNVAIALTHQRGPLPLSPDSPATLLARSARRSAGSPASP--LVPVRAG 358
Cdd:PHA03378 612 QSHIPETSAPRQW-PMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGAntMLPIQWA 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720403217 359 PLLARGPWASTSRLPAPPARTLHASLSRTGRSQVsllgPPPGGGARRLGPrgrPLSASQPSLPQRATGDGSPRRKGSGSE 438
Cdd:PHA03378 691 PGTMQPPPRAPTPMRPPAAPPGRAQRPAAATGRA----RPPAAAPGRARP---PAAAPGRARPPAAAPGRARPPAAAPGR 763
|
170 180 190
....*....|....*....|....*....|.
gi 1720403217 439 RLPPSGLLAKPpgTVQPPRSSVPEPVT-PRG 468
Cdd:PHA03378 764 ARPPAAAPGAP--TPQPPPQAPPAPQQrPRG 792
|
|
|