|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 super family |
cl33720 |
large tegument protein UL36; Provisional |
2-274 |
3.02e-11 |
|
large tegument protein UL36; Provisional
The actual alignment was detected with superfamily member PHA03247:
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 2 PPATYDGASLTMPTATLGNLRAFNVTAPSLAAPSLTPPQMVTPNlqqffPQATRQSLLGPPPVGVPINPSqlnhsgrnTQ 81
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPPAPAPPAAPA--------AG 2778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 82 KQARTPSSTTPNRKDSSSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAKRCRS 161
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 162 SEESTEKGPTGQPQARVQ-----PQTQMTAPKQTQTPDRLPEPPEVQMLPRiQPqalqiqtqpkllrQAQTQTSPEHLAP 236
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAaparpPVRRLARPAVSRSTESFALPPDQPERPP-QP-------------QAPPPPQPQPQPP 2924
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720400488 237 QQDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP 274
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
484-508 |
1.86e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
:
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 41.77 E-value: 1.86e-05
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
600-633 |
1.83e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
:
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 1.83e-03
10 20 30
....*....|....*....|....*....|....
gi 1720400488 600 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 633
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| GIY-YIG_SF super family |
cl15257 |
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large ... |
453-520 |
2.33e-03 |
|
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions.
The actual alignment was detected with superfamily member cd10442:
Pssm-ID: 472790 Cd Length: 92 Bit Score: 37.73 E-value: 2.33e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 453 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 520
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2-274 |
3.02e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 2 PPATYDGASLTMPTATLGNLRAFNVTAPSLAAPSLTPPQMVTPNlqqffPQATRQSLLGPPPVGVPINPSqlnhsgrnTQ 81
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPPAPAPPAAPA--------AG 2778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 82 KQARTPSSTTPNRKDSSSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAKRCRS 161
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 162 SEESTEKGPTGQPQARVQ-----PQTQMTAPKQTQTPDRLPEPPEVQMLPRiQPqalqiqtqpkllrQAQTQTSPEHLAP 236
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAaparpPVRRLARPAVSRSTESFALPPDQPERPP-QP-------------QAPPPPQPQPQPP 2924
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720400488 237 QQDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP 274
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
484-508 |
1.86e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 41.77 E-value: 1.86e-05
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
26-256 |
1.57e-04 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 45.09 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 26 VTAPSLAAPSLTPPQMVTPNLQQffpqatrqSLLGPPPVGVPINPSQLN-HSGRNTQKQARTPSSTTpnRKDSSSQTVPL 104
Cdd:NF033875 21 VVAPILFLGVLGVVGLATDNVQA--------AELDTQPGTTTVQPDNPDpQSGSETPKTAVSEEATV--QKDTTSQPTKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 105 EDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEpfETLEPPAKrcrsseestekgPTGQPQARVQPQTQM 184
Cdd:NF033875 91 EEVASEKNGAEQSSATPNDTTNAQQPTVGAEKSAQEQPVVSPE--TTNEPLGQ------------PTEVAPAENEANKST 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720400488 185 TAPKQTQTPDRLPEPPEVQMLPRIqpqalQIQTQPKllrQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQTS 256
Cdd:NF033875 157 SIPKEFETPDVDKAVDEAKKDPNI-----TVVEKPA---EDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQA 220
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
55-291 |
1.76e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.56 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 55 RQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPS-STTPNR----KDSSSQTVPledredptegseeatELQMDTcedqd 129
Cdd:pfam09770 101 RFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQqPSKPVRtgyeKYKEPEPIP---------------DLQVDA----- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 130 SL--VGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTE-------KGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPP 200
Cdd:pfam09770 161 SLwgVAPKKAAAPAPAPQPAAQPASLPAPSRKMMSLEEVEaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 201 EVQMLPRIQ-------------PQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQA----QSQEQTSEKTQDQP 263
Cdd:pfam09770 241 QQQQQPQQQpqqpqqhpgqghpVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQIlqnpNRLSAARVGYPQNP 320
|
250 260
....*....|....*....|....*...
gi 1720400488 264 QTWPQGSVPPPEQASGPACATEPQLSSH 291
Cdd:pfam09770 321 QPGVQPAPAHQAHRQQGSFGRQAPIITH 348
|
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
600-633 |
1.83e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 1.83e-03
10 20 30
....*....|....*....|....*....|....
gi 1720400488 600 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 633
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| GIY-YIG_PLEs |
cd10442 |
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ... |
453-520 |
2.33e-03 |
|
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.
Pssm-ID: 198389 Cd Length: 92 Bit Score: 37.73 E-value: 2.33e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 453 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 520
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
2-274 |
3.02e-11 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 67.27 E-value: 3.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 2 PPATYDGASLTMPTATLGNLRAFNVTAPSLAAPSLTPPQMVTPNlqqffPQATRQSLLGPPPVGVPINPSqlnhsgrnTQ 81
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA-----RPARPPTTAGPPAPAPPAAPA--------AG 2778
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 82 KQARTPSSTTPNRKDSSSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAKRCRS 161
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 162 SEESTEKGPTGQPQARVQ-----PQTQMTAPKQTQTPDRLPEPPEVQMLPRiQPqalqiqtqpkllrQAQTQTSPEHLAP 236
Cdd:PHA03247 2859 GGDVRRRPPSRSPAAKPAaparpPVRRLARPAVSRSTESFALPPDQPERPP-QP-------------QAPPPPQPQPQPP 2924
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720400488 237 QQDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP 274
Cdd:PHA03247 2925 PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
38-309 |
2.13e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 51.48 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 38 PPQMVTPNLQqffPQATRQSLLGPPPVGVPINPSqlnhsgrnTQKQARTPSSTTpnrkDSSSQTVPLEDREDPtEGSEEA 117
Cdd:PHA03247 2551 PPPPLPPAAP---PAAPDRSVPPPRPAPRPSEPA--------VTSRARRPDAPP----QSARPRAPVDDRGDP-RGPAPP 2614
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 118 TELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAK-----RCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQT 192
Cdd:PHA03247 2615 SPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDdpapgRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGS 2694
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 193 PDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPehlAPQQDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGSVP 272
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASP---ALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
|
250 260 270
....*....|....*....|....*....|....*...
gi 1720400488 273 PPEQASGPA-CATEPQLSSHAAEAGSDPDKALPEPVSA 309
Cdd:PHA03247 2772 PAAPAAGPPrRLTRPAVASLSESRESLPSPWDPADPPA 2809
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
144-263 |
1.57e-05 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 48.57 E-value: 1.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 144 PEPEPFETLEPPAKRCRSSEESTEKGPT----GQPQARVQPQTQMTAPKQTQTPDRLP--EPPEVQMLPRIQPQALQIQT 217
Cdd:PRK14949 654 PASLSKPASSPDASQTSASFDLDPDFELathqSVPEAALASGSAPAPPPVPDPYDRPPweEAPEVASANDGPNNAAEGNL 733
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1720400488 218 QPKLLRQAQTQ---TSPEHLAPQQDQVEPQVPTQAQSQEQTSEKTQDQP 263
Cdd:PRK14949 734 SESVEDASNSElqaVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTE 782
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
144-315 |
1.74e-05 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 47.37 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 144 PEPEP----FETLEPPAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDRLPEPPEVQMLPRIQPQALQIQ 216
Cdd:PRK10927 77 PKPEErwryIKELESRQPGVRAPTEPSAGGEVKTPEQLTPEQRQLLEQMQAdmrQQPTQLVEVPWNEQTPEQRQQTLQRQ 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 217 TQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATEPQLSSHAAEAg 296
Cdd:PRK10927 157 RQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVTRAADA- 235
|
170
....*....|....*....
gi 1720400488 297 sdpdkalPEPVSAQSSEDR 315
Cdd:PRK10927 236 -------PKPTAEKKDERR 247
|
|
| zf-C2H2_jaz |
pfam12171 |
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ... |
484-508 |
1.86e-05 |
|
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.
Pssm-ID: 432381 [Multi-domain] Cd Length: 27 Bit Score: 41.77 E-value: 1.86e-05
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
135-315 |
5.78e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.62 E-value: 5.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 135 DSMLSEPQVPEPEPfetlePPAKRcrSSEESTEKGP-TGQPQARVQPQTQMTAPKQTQTPDRLPEP---PEVQMLPRIQP 210
Cdd:PRK10263 338 EPVTQTPPVASVDV-----PPAQP--TVAWQPVPGPqTGEPVIAPAPEGYPQQSQYAQPAVQYNEPlqqPVQPQQPYYAP 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 211 QALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQT--SEKTQDQPQTWPQGSVPPPeqasgpacatepql 288
Cdd:PRK10263 411 AAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTfaPQSTYQTEQTYQQPAAQEP-------------- 476
|
170 180
....*....|....*....|....*..
gi 1720400488 289 SSHAAEAGSDPDKALPEPVSAQSSEDR 315
Cdd:PRK10263 477 LYQQPQPVEQQPVVEPEPVVEETKPAR 503
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
133-286 |
6.40e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 46.62 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 133 GPDSMLSEPQV-PEPEPFETLEPPAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEvqmlpriQPQ 211
Cdd:PRK10263 739 GPHEPLFTPIVePVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQ-------QPV 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 212 AlqiqtqpkllRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQ-----TSEKTQDQPQTWPQGSVPPPEQASGPACATEP 286
Cdd:PRK10263 812 A----------PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTllhplLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEP 881
|
|
| Agg_substance |
NF033875 |
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, ... |
26-256 |
1.57e-04 |
|
LPXTG-anchored aggregation substance; Aggregation substances, as described in Enterococcus, are LPXTG-anchored large surface proteins that contribute to virulence. Several closely related paralogs may be found in a single strain.
Pssm-ID: 411439 [Multi-domain] Cd Length: 1306 Bit Score: 45.09 E-value: 1.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 26 VTAPSLAAPSLTPPQMVTPNLQQffpqatrqSLLGPPPVGVPINPSQLN-HSGRNTQKQARTPSSTTpnRKDSSSQTVPL 104
Cdd:NF033875 21 VVAPILFLGVLGVVGLATDNVQA--------AELDTQPGTTTVQPDNPDpQSGSETPKTAVSEEATV--QKDTTSQPTKV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 105 EDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEpfETLEPPAKrcrsseestekgPTGQPQARVQPQTQM 184
Cdd:NF033875 91 EEVASEKNGAEQSSATPNDTTNAQQPTVGAEKSAQEQPVVSPE--TTNEPLGQ------------PTEVAPAENEANKST 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720400488 185 TAPKQTQTPDRLPEPPEVQMLPRIqpqalQIQTQPKllrQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQTS 256
Cdd:NF033875 157 SIPKEFETPDVDKAVDEAKKDPNI-----TVVEKPA---EDLGNVSSKDLAAKEKEVDQLQKEQAKKIAQQA 220
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
171-313 |
5.50e-04 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 43.54 E-value: 5.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 171 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEV--QMLPRIQPQALQIQTQPKLLRQAQTQTSPE--HLAPQQDQVEPQVP 246
Cdd:PRK10263 327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVawQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAvqYNEPLQQPVQPQQP 406
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720400488 247 TQAQSQEQTSEKTQ-----DQPQTWPQGSVPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSE 313
Cdd:PRK10263 407 YYAPAAEQPAQQPYyapapEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLY 478
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
29-321 |
7.26e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.00 E-value: 7.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 29 PSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSG-------RNTQKQARTPSSTTPNRK------ 95
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApgrvsrpRRARRLGRAAQASSPPQRprrraa 2688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 96 --------DSSSQTVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPE-----------PEPFETLEPPA 156
Cdd:PHA03247 2689 rptvgsltSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatpggparpARPPTTAGPPA 2768
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 157 -----------------KRCRSSEESTEKGP---------------------TGQPQARVQPQT--QMTAPKQTQTPDRL 196
Cdd:PHA03247 2769 pappaapaagpprrltrPAVASLSESRESLPspwdpadppaavlapaaalppAASPAGPLPPPTsaQPTAPPPPPGPPPP 2848
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 197 PEPPEVQMLP----RIQPQALQIQTQP--------KLLRQAQTQTSPEHLAPQQDQVE----PQVPTQAQSQEQTSEKTQ 260
Cdd:PHA03247 2849 SLPLGGSVAPggdvRRRPPSRSPAAKPaaparppvRRLARPAVSRSTESFALPPDQPErppqPQAPPPPQPQPQPPPPPQ 2928
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1720400488 261 DQPQTWPQG-SVPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 321
Cdd:PHA03247 2929 PQPPPPPPPrPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
200-287 |
1.03e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 42.38 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 200 PEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQ-EQTSEKTQDQPQ-TWPQGSVPPPEQA 277
Cdd:PRK10263 751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQyQQPQQPVAPQPQyQQPQQPVAPQPQY 830
|
90
....*....|
gi 1720400488 278 SGPACATEPQ 287
Cdd:PRK10263 831 QQPQQPVAPQ 840
|
|
| PHA03379 |
PHA03379 |
EBNA-3A; Provisional |
29-255 |
1.67e-03 |
|
EBNA-3A; Provisional
Pssm-ID: 223066 [Multi-domain] Cd Length: 935 Bit Score: 41.97 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 29 PSLAAPSLTPPQMVTPNLQQFFP--------QATRQSLLGPPPVGVPINPSQLNHSGRNTQKQArtPSSTTPNRKDSSSQ 100
Cdd:PHA03379 508 PWEASLSQVPGVAFAPVMPQPMPvepvpvptVALERPVCPAPPLIAMQGPGETSGIVRVRERWR--PAPWTPNPPRSPSQ 585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 101 tVPLEDREDPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFetlePPAKRCRSSEESTEKG-PTGQPQARVQ 179
Cdd:PHA03379 586 -MSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQMF----PGSPFSQVADVMRAGGvPAMQPQYFDL 660
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1720400488 180 PQTQMTAPKQTQTPDR---LPEPPevqmLPRIQPQALQIqtqpKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQT 255
Cdd:PHA03379 661 PLQQPISQGAPLAPLRasmGPVPP----VPATQPQYFDI----PLTEPINQGASAAHFLPQQPMEGPLVPERWMFQGAT 731
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
55-291 |
1.76e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.56 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 55 RQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPS-STTPNR----KDSSSQTVPledredptegseeatELQMDTcedqd 129
Cdd:pfam09770 101 RFNRQQPAARAAQSSAQPPASSLPQYQYASQQSQqPSKPVRtgyeKYKEPEPIP---------------DLQVDA----- 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 130 SL--VGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTE-------KGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPP 200
Cdd:pfam09770 161 SLwgVAPKKAAAPAPAPQPAAQPASLPAPSRKMMSLEEVEaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQI 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 201 EVQMLPRIQ-------------PQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQA----QSQEQTSEKTQDQP 263
Cdd:pfam09770 241 QQQQQPQQQpqqpqqhpgqghpVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQIlqnpNRLSAARVGYPQNP 320
|
250 260
....*....|....*....|....*...
gi 1720400488 264 QTWPQGSVPPPEQASGPACATEPQLSSH 291
Cdd:pfam09770 321 QPGVQPAPAHQAHRQQGSFGRQAPIITH 348
|
|
| ZnF_U1 |
smart00451 |
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ... |
600-633 |
1.83e-03 |
|
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Pssm-ID: 197732 [Multi-domain] Cd Length: 35 Bit Score: 36.46 E-value: 1.83e-03
10 20 30
....*....|....*....|....*....|....
gi 1720400488 600 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 633
Cdd:smart00451 3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
132-325 |
2.03e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 132 VGPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEK-GPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQP 210
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPaAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 211 QALQIQTQPKLLRQAQTQTSPEHLAPQ---QDQVEPQVPTQAQSQEQTSEKTQDQPQTWPQGS--------VPPPEQASG 279
Cdd:PRK07764 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAgaaPAQPAPAPAATPPAGQADDPAAQPPQAAQGASApspaaddpVPLPPEPDD 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1720400488 280 PACATEPQLSSHAAEAGSDPDKALPEP-VSAQSSEDRSREASAGGLD 325
Cdd:PRK07764 748 PPDPAGAPAQPPPPPAPAPAAAPAAAPpPSPPSEEEEMAEDDAPSMD 794
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
199-314 |
2.20e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 41.61 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 199 PPEVQMLPRIQPQAlqiQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQtsektQDQPQTWPQGSVPPPEQAS 278
Cdd:PRK10263 740 PHEPLFTPIVEPVQ---QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ-----QPQQPVAPQPQYQQPQQPV 811
|
90 100 110
....*....|....*....|....*....|....*.
gi 1720400488 279 GPacatEPQLSSHAAEAGSDPDKALPEPVSAQSSED 314
Cdd:PRK10263 812 AP----QPQYQQPQQPVAPQPQYQQPQQPVAPQPQD 843
|
|
| GIY-YIG_PLEs |
cd10442 |
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ... |
453-520 |
2.33e-03 |
|
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.
Pssm-ID: 198389 Cd Length: 92 Bit Score: 37.73 E-value: 2.33e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 453 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 520
Cdd:cd10442 6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
26-389 |
2.94e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.08 E-value: 2.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 26 VTAPSLAAPSLTPPQMVTPNLQQFfPQATRQSLLGPPPVGVPINPsqlnhsgRNTQKQARTPSSTTPNRKDSSSQTVPLe 105
Cdd:PHA03247 2667 ARRLGRAAQASSPPQRPRRRAARP-TVGSLTSLADPPPPPPTPEP-------APHALVSATPLPPGPAAARQASPALPA- 2737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 106 DREDPTEGSEEATELQMDTCEDQDSLVGPDSMlSEPQVPEPEPFETLEPPAkrCRSSEESTEKGPTgqPQARVQPQTQMT 185
Cdd:PHA03247 2738 APAPPAVPAGPATPGGPARPARPPTTAGPPAP-APPAAPAAGPPRRLTRPA--VASLSESRESLPS--PWDPADPPAAVL 2812
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 186 APKQTQTPDRLPEPPE------VQMLPRIQPQALQIQTQP--------KLLRQAQTQTSPEHLApqqdqVEPQVPTQAQS 251
Cdd:PHA03247 2813 APAAALPPAASPAGPLppptsaQPTAPPPPPGPPPPSLPLggsvapggDVRRRPPSRSPAAKPA-----APARPPVRRLA 2887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 252 QEQTSEKTQDQPQTwPQGSVPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEdrsrEASAGGLDLGECEK 331
Cdd:PHA03247 2888 RPAVSRSTESFALP-PDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD----PAGAGEPSGAVPQP 2962
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1720400488 332 RAGEMlgmwgAGSSLKVTILQSSNSRAFNTTPLTSGPRPGDstSATPAIASTPSKQSL 389
Cdd:PHA03247 2963 WLGAL-----VPGRVAVPRFRVPQPAPSREAPASSTPPLTG--HSLSRVSSWASSLAL 3013
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
10-392 |
8.31e-03 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 39.37 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 10 SLTMPTATLGNLRAFNVTAPSLAAPSLTPPQMVTPnlqQFFPQATRQSLLGPPPVGVPINPSQLNHSGrntqkqartPSS 89
Cdd:pfam03154 229 TLIQQTPTLHPQRLPSPHPPLQPMTQPPPPSQVSP---QPLPQPSLHGQMPPMPHSLQTGPSHMQHPV---------PPQ 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 90 TTPNRKDSSSQTVPLEdredPTEGSEEATELQMDTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPPAkrcrsseeSTEKG 169
Cdd:pfam03154 297 PFPLTPQSSQSQVPPG----PSPAAPGQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPP--------TTPIP 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 170 PTGQPQARVQPqTQMTAPKQTQTPDRLPEPPEVQML--------PRIQPQALQIQTQPKllrqaQTQTSPehlapqqdqV 241
Cdd:pfam03154 365 QLPNPQSHKHP-PHLSGPSPFQMNSNLPPPPALKPLsslsthhpPSAHPPPLQLMPQSQ-----QLPPPP---------A 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 242 EPQVPTQAQSQEqtsektqdqpqtwPQGSVPPPEQASGPAcATEPQLSSHAAEAGSDPDKALPE--PVSAQSSEDRSREA 319
Cdd:pfam03154 430 QPPVLTQSQSLP-------------PPAASHPPTSGLHQV-PSQSPFPQHPFVPGGPPPITPPSgpPTSTSSAMPGIQPP 495
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1720400488 320 SAGGLDLGecekragemlGMWGAGSSLKVTILQSSNSRAFNTTPLTSGPRPGDSTSATPAIASTPS--KQSLQFF 392
Cdd:pfam03154 496 SSASVSSS----------GPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPShaSQSARFY 560
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
132-252 |
8.50e-03 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 39.68 E-value: 8.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 132 VGPDSMLSEPQVPEPepfetlePPAKRCRSSEESTEKGPTGQPQARVQPQTQMTAPKQTQTpdrlPEPPEVQMLPRIQPQ 211
Cdd:PRK10263 772 VAPQPQYQQPQQPVA-------PQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVA----PQPQYQQPQQPVAPQ 840
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1720400488 212 ALQIQTQPKLLRQA-----QTQTSP----EHLAPQQDQVEPqVPTQAQSQ 252
Cdd:PRK10263 841 PQDTLLHPLLMRNGdsrplHKPTTPlpslDLLTPPPSEVEP-VDTFALEQ 889
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
133-388 |
8.60e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 39.38 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 133 GPDSMLSEPQVPEPEPFETLEPPAKRCRSSEESTEKGPTGQPQAR--VQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQP 210
Cdd:PHA03307 60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGspTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLR 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 211 QAlqiqtqPKLLRQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQTSEKTQDQPQtwPQGSVPPPEQASGPACATEPQLSS 290
Cdd:PHA03307 140 PV------GSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPS--SPPAEPPPSTPPAAASPRPPRRSS 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 291 HAAEAGSDPDkalpePVSAQSSEDRSREASAGGLDLGECEKRAGEmLGMWGAGSSLKVTILQSSNSRAfntTPLTSGPRP 370
Cdd:PHA03307 212 PISASASSPA-----PAPGRSAADDAGASSSDSSSSESSGCGWGP-ENECPLPRPAPITLPTRIWEAS---GWNGPSSRP 282
|
250
....*....|....*...
gi 1720400488 371 GDSTSATPAIASTPSKQS 388
Cdd:PHA03307 283 GPASSSSSPRERSPSPSP 300
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
67-327 |
9.67e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 39.31 E-value: 9.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 67 PINPSQLNHSGRNTQKQARTPSSTTPNRKDSSSQTVPLEDREDPTEGSEEATELQMDTcedQDSLVGPDSMLSEPQVP-- 144
Cdd:PRK08691 360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTPVQTASAAAMPS---EGKTAGPVSNQENNDVPpw 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 145 --EPEPFETLEPPAKrcrsseestekgptgQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKll 222
Cdd:PRK08691 437 edAPDEAQTAAGTAQ---------------TSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPN-- 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720400488 223 RQAQTQTSPEHLAPQQDQVEPQVPTQAQSQEQTSEktqdqpqtwpqgsVPPPEQASGPACATEPQLSSHAAEAGSDPDKA 302
Cdd:PRK08691 500 DEAVETETFAHEAPAEPFYGYGFPDNDCPPEDGAE-------------IPPPDWEHAAPADTAGGGADEEAEAGGIGGNN 566
|
250 260
....*....|....*....|....*.
gi 1720400488 303 LP-EPVSAQSSEDRSREASAGGLDLG 327
Cdd:PRK08691 567 TPsAPPPEFSTENWAAIVRHFARKLG 592
|
|
| |
