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Conserved domains on  [gi|1720383915|ref|XP_030104329|]
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CYFIP-related Rac1 interactor B isoform X2 [Mus musculus]

Protein Classification

CYFIP-related Rac1 interactor family protein( domain architecture ID 10537453)

CYFIP-related Rac1 interactor (CYRI) family protein is a DUF1394 domain-containing protein; similar to Homo sapiens proteins, CYRIA and CYRIB, which may negatively regulates RAC1 signaling and RAC1-driven cytoskeletal remodeling

Gene Ontology:  GO:0031267

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CYRIA-B_Rac1-bd pfam07159
CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can ...
109-404 0e+00

CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization. In mice, CYRIB (also known as CYRI or FAM49B) negatively regulates RAC1-driven cytoskeletal remodelling and plays a role in restricting infection mediated by Mycobacterium tuberculosis and Listeria monocytogenes.


:

Pssm-ID: 462106  Cd Length: 301  Bit Score: 594.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 109 DAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEkLQEKAWGAVVPLVGKLKKFYEFSQRLEAAL 188
Cdd:pfam07159   8 NAQPTEEEREIYNEVQEVLQDADNILQDLQSYKGAGEEIREAISNPSEE-NQEKAWNAVIPLVDKLKEFYEFSSKLETVV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 189 RGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGEnEVNNELA 268
Cdd:pfam07159  87 PKLLGALCSGPLSPTQHLEQKQALAKQFAEILDFVLKFDDLKMKNPAIQNDFSYYRRTLSRMKMNNRDDEEE-VVSDELA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 269 NRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILY 348
Cdd:pfam07159 166 NRMSLFYAYATPMLKVLSDATTKFVSENKSLPIDNTTDCLSTMANVCRVMLEKPDYRSRFQNEETVLFCLRVMVGVIILY 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720383915 349 DHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIR 404
Cdd:pfam07159 246 DHVHPVGAFVKKSPIDIKGCVKVLKDQPPNSVEGLLNALRYTTKHLNDESTPKNIK 301
PRK12323 super family cl46901
DNA polymerase III subunit gamma/tau;
1-91 8.72e-03

DNA polymerase III subunit gamma/tau;


The actual alignment was detected with superfamily member PRK12323:

Pssm-ID: 481241 [Multi-domain]  Cd Length: 700  Bit Score: 38.32  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915   1 MGVFLPGSRGPGAA---------RQVAPEPSASRPLVPAISGRAGAGPLLLPFAAAAVACCRGGAAREPAAGTrEPPTRK 71
Cdd:PRK12323  360 MLAFRPGQSGGGAGpataaaapvAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA-LAAARQ 438
                          90       100
                  ....*....|....*....|
gi 1720383915  72 RRVCTAGSRRQLARPPVGPP 91
Cdd:PRK12323  439 ASARGPGGAPAPAPAPAAAP 458
 
Name Accession Description Interval E-value
CYRIA-B_Rac1-bd pfam07159
CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can ...
109-404 0e+00

CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization. In mice, CYRIB (also known as CYRI or FAM49B) negatively regulates RAC1-driven cytoskeletal remodelling and plays a role in restricting infection mediated by Mycobacterium tuberculosis and Listeria monocytogenes.


Pssm-ID: 462106  Cd Length: 301  Bit Score: 594.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 109 DAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEkLQEKAWGAVVPLVGKLKKFYEFSQRLEAAL 188
Cdd:pfam07159   8 NAQPTEEEREIYNEVQEVLQDADNILQDLQSYKGAGEEIREAISNPSEE-NQEKAWNAVIPLVDKLKEFYEFSSKLETVV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 189 RGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGEnEVNNELA 268
Cdd:pfam07159  87 PKLLGALCSGPLSPTQHLEQKQALAKQFAEILDFVLKFDDLKMKNPAIQNDFSYYRRTLSRMKMNNRDDEEE-VVSDELA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 269 NRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILY 348
Cdd:pfam07159 166 NRMSLFYAYATPMLKVLSDATTKFVSENKSLPIDNTTDCLSTMANVCRVMLEKPDYRSRFQNEETVLFCLRVMVGVIILY 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720383915 349 DHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIR 404
Cdd:pfam07159 246 DHVHPVGAFVKKSPIDIKGCVKVLKDQPPNSVEGLLNALRYTTKHLNDESTPKNIK 301
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1-91 8.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.32  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915   1 MGVFLPGSRGPGAA---------RQVAPEPSASRPLVPAISGRAGAGPLLLPFAAAAVACCRGGAAREPAAGTrEPPTRK 71
Cdd:PRK12323  360 MLAFRPGQSGGGAGpataaaapvAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA-LAAARQ 438
                          90       100
                  ....*....|....*....|
gi 1720383915  72 RRVCTAGSRRQLARPPVGPP 91
Cdd:PRK12323  439 ASARGPGGAPAPAPAPAAAP 458
 
Name Accession Description Interval E-value
CYRIA-B_Rac1-bd pfam07159
CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can ...
109-404 0e+00

CYRIA/CYRIB Rac1 binding domain; This domain has been annotated as Rac1-binding domain. It can be found in human CYRIA/CYRIB and at the N terminus of CYFIP1/2. CYFIP proteins are known RAC1 effectors that stimulate actin polymerization. In mice, CYRIB (also known as CYRI or FAM49B) negatively regulates RAC1-driven cytoskeletal remodelling and plays a role in restricting infection mediated by Mycobacterium tuberculosis and Listeria monocytogenes.


Pssm-ID: 462106  Cd Length: 301  Bit Score: 594.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 109 DAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHPADEkLQEKAWGAVVPLVGKLKKFYEFSQRLEAAL 188
Cdd:pfam07159   8 NAQPTEEEREIYNEVQEVLQDADNILQDLQSYKGAGEEIREAISNPSEE-NQEKAWNAVIPLVDKLKEFYEFSSKLETVV 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 189 RGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTLRFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGEnEVNNELA 268
Cdd:pfam07159  87 PKLLGALCSGPLSPTQHLEQKQALAKQFAEILDFVLKFDDLKMKNPAIQNDFSYYRRTLSRMKMNNRDDEEE-VVSDELA 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915 269 NRMSLFYAEATPMLKTLSDATTKFVSENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILY 348
Cdd:pfam07159 166 NRMSLFYAYATPMLKVLSDATTKFVSENKSLPIDNTTDCLSTMANVCRVMLEKPDYRSRFQNEETVLFCLRVMVGVIILY 245
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1720383915 349 DHVHPVGAFAKTSKIDMKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIR 404
Cdd:pfam07159 246 DHVHPVGAFVKKSPIDIKGCVKVLKDQPPNSVEGLLNALRYTTKHLNDESTPKNIK 301
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1-91 8.72e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 38.32  E-value: 8.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1720383915   1 MGVFLPGSRGPGAA---------RQVAPEPSASRPLVPAISGRAGAGPLLLPFAAAAVACCRGGAAREPAAGTrEPPTRK 71
Cdd:PRK12323  360 MLAFRPGQSGGGAGpataaaapvAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA-LAAARQ 438
                          90       100
                  ....*....|....*....|
gi 1720383915  72 RRVCTAGSRRQLARPPVGPP 91
Cdd:PRK12323  439 ASARGPGGAPAPAPAPAAAP 458
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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