|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
243-527 |
2.26e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 85.55 E-value: 2.26e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 243 LADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEdvevlggrlfnisdqhaepwvisgchsfyskrys 322
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYD---------------------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 323 RALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNIYKT 402
Cdd:COG2956 60 RAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 403 LGANAQTLTILATVCLE--DPvtqEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALA-NQSDCVLHR 479
Cdd:COG2956 140 GPENAHAYCELAELYLEqgDY---DEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEqDPDYLPALP 216
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1079797887 480 MLGDFLVAVNDYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTDA 527
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAA 264
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
305-517 |
3.83e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.78 E-value: 3.83e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 305 AEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYL 384
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 385 ASNGIREAMGMANNIYKTLGANAQTLTILATVCLE--DPvtqEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGI 462
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQegDW---EKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1079797887 463 ALLRNALANQSDCV-LHRMLGDFLVAVNDYQEAMDQYSIALSLDPNDQKSLEGMQK 517
Cdd:COG2956 165 EALEKALKLDPDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
320-510 |
4.64e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.66 E-value: 4.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 320 RYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMgmanni 399
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEAL------ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 400 yktlganaqtltilatvcledpvtqekakTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LH 478
Cdd:COG3914 133 -----------------------------AALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAeAL 183
|
170 180 190
....*....|....*....|....*....|..
gi 1079797887 479 RMLGDFLVAVNDYQEAMDQYSIALSLDPNDQK 510
Cdd:COG3914 184 NNLGNALQDLGRLEEAIAAYRRALELDPDNAD 215
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
140-472 |
7.42e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 77.85 E-value: 7.42e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 140 MLANLYRKAGQERSAVTSYKEVLRQCPLALDAIIGLLSLsvkgaevasmtmdviqsipnldwlsvwikayaFIHAGDNQR 219
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNL--------------------------------YRRRGEYDR 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 220 AINTICSLEKKSllRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFN 299
Cdd:COG2956 61 AIRIHQKLLERD--PDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 300 ISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGL 379
Cdd:COG2956 139 LGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 380 IDCYLASNGireamgmanniyktlganaqtltilatvcledpvtQEKAKTLLDKALAQRPDYTkAVVKKAELLSREQKYE 459
Cdd:COG2956 219 AELYEKLGD-----------------------------------PEEALELLRKALELDPSDD-LLLALADLLERKEGLE 262
|
330
....*....|...
gi 1079797887 460 EGIALLRNALANQ 472
Cdd:COG2956 263 AALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
332-508 |
1.34e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.50 E-value: 1.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 332 IQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNIYKTLGANAQTLT 411
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 412 ILATVC--LEDPvtqEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LHRMLGDFLVAV 488
Cdd:COG0457 81 NLGLALqaLGRY---EEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAdALYNLGIALEKL 157
|
170 180
....*....|....*....|
gi 1079797887 489 NDYQEAMDQYSIALSLDPND 508
Cdd:COG0457 158 GRYEEALELLEKLEAAALAA 177
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
235-470 |
2.49e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.04 E-value: 2.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 235 DNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCH 314
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 315 SFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMG 394
Cdd:COG0457 86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 395 M----ANNIYKTLGANAQTLTILATVCLEDPVTQEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALA 470
Cdd:COG0457 166 LleklEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
160-420 |
4.58e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 65.40 E-value: 4.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 160 EVLRQCPLALDAIIGLLSLSVKGAEVASMTMDVIQSIPNLDWLSVWIKAYAFIHAGDNQRAINTICSLEKKSLLRDNVDL 239
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 240 LVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSK 319
Cdd:COG3914 81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 320 RYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNI 399
Cdd:COG3914 161 RLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
250 260
....*....|....*....|.
gi 1079797887 400 yKTLGANAQTLTILATVCLED 420
Cdd:COG3914 241 -AALARGPSELSPFALLYLPD 260
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
237-370 |
1.49e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 1.49e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 237 VDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHSF 316
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1079797887 317 YSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
302-474 |
2.74e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 302 DQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLID 381
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 382 CYLASNGIREAMgmanniyktlganaqtltilatvcledpvtqekakTLLDKALAQRPDYTKAVVKKAELLSREQKYEEG 461
Cdd:COG4783 81 ALLKAGDYDEAL-----------------------------------ALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
170
....*....|...
gi 1079797887 462 IALLRNALANQSD 474
Cdd:COG4783 126 IAALEKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
336-508 |
3.32e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 336 SNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMgmanniyktlganaqtltilat 415
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAI---------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 416 vcledpvtqekakTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LHRMLGDFLVAVNDYQEA 494
Cdd:COG4783 59 -------------VLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPeAYLRLARAYRALGRPDEA 125
|
170
....*....|....
gi 1079797887 495 MDQYSIALSLDPND 508
Cdd:COG4783 126 IAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
279-483 |
5.52e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.85 E-value: 5.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 279 YLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGchsfyskRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEA 358
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALG-------RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 359 IIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNIYKTLGANAQTLTILATVcLEDPVTQEKAKTLLDKALAQR 438
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA-LQDLGRLEEAIAAYRRALELD 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1079797887 439 PDYTKA------VVKKAELLSREQKYEEGIALLRNALANQSDCVLHRMLGD 483
Cdd:COG3914 211 PDNADAhsnllfALRQACDWEVYDRFEELLAALARGPSELSPFALLYLPDD 261
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
99-399 |
7.64e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.05 E-value: 7.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 99 PSEIEVKYKIAECYTILKLDKDAIAVLDGIPSRQRT-PKINMMLANLYRKAGQERSAVTSYKEVLRQCPLALDAIIGLls 177
Cdd:COG2956 39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDrAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL-- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 178 lsvkgaevasmtmdviqsipnldwlsvwikAYAFIHAGDNQRAINTICSLEKKSllRDNVDLLVSLADVYFRAGDTKNAI 257
Cdd:COG2956 117 ------------------------------AEIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 258 LKFEQAQMLDPYLIKGMDVYGYLMAREGhledvevlggrlfnisdqhaepwvisgchsfyskRYSRALYLGAKAIQLNSN 337
Cdd:COG2956 165 EALEKALKLDPDCARALLLLAELYLEQG----------------------------------DYEEAIAALERALEQDPD 210
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079797887 338 SVQALLLKGAALRNMGRVQEAIIHFREAMRLAPcRLDCYEGLIDCYLASNGIREAMGMANNI 399
Cdd:COG2956 211 YLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGLEAALALLERQ 271
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
207-509 |
8.50e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 58.56 E-value: 8.50e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 207 KAYAFIHAGDNQRAINticSLEKK-SLLRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREG 285
Cdd:TIGR02917 471 LGAIYLGKGDLAKARE---AFEKAlSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 286 HLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREA 365
Cdd:TIGR02917 548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 366 MRLAPCRLDCYEGLIDCYLAsngireamgMANNiyktlganaqtltilatvcledpvtqEKAKTLLDKALAQRPDYTKAV 445
Cdd:TIGR02917 628 LALQPDSALALLLLADAYAV---------MKNY--------------------------AKAITSLKRALELKPDNTEAQ 672
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1079797887 446 VKKAELLSREQKYEEGIALLRN-ALANQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPNDQ 509
Cdd:TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSlQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQ 737
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
330-470 |
9.44e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 53.86 E-value: 9.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 330 KAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGireamgmanniyktlganaqt 409
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGD--------------------- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1079797887 410 ltilatvcledpvtQEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALA 470
Cdd:COG4235 67 --------------TEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
425-515 |
2.07e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 55.40 E-value: 2.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 425 EKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LHRMLGDFLVAVNDYQEAMDQYSIALS 503
Cdd:COG0457 25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAeALNNLGLALQALGRYEEALEDYDKALE 104
|
90
....*....|..
gi 1079797887 504 LDPNDQKSLEGM 515
Cdd:COG0457 105 LDPDDAEALYNL 116
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
236-508 |
3.31e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.63 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 236 NVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHS 315
Cdd:TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 316 FYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGM 395
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKI 691
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 396 ANNIYKTLGANAQTLTILATVCLEDPVTQEkAKTLLDKALAQRPDyTKAVVKKAELLSREQKYEEGIALLRNALANQ-SD 474
Cdd:TIGR02917 692 AKSLQKQHPKAALGFELEGDLYLRQKDYPA-AIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHpND 769
|
250 260 270
....*....|....*....|....*....|....
gi 1079797887 475 CVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPND 508
Cdd:TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-508 |
3.73e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 56.25 E-value: 3.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 208 AYAFIHAGDNQRAINTicsLEKKSLLRDN--VDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREG 285
Cdd:TIGR02917 97 ARAYLLQGKFQQVLDE---LPGKTLLDDEgaAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 286 HLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREA 365
Cdd:TIGR02917 174 RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADAL 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 366 MRLAPCRLDC--YEGLIDcyLASNGIREAMGMANNIYKtLGANAQTLTILATVCLEDPVTQEKAKTLLDKALAQRPDYTK 443
Cdd:TIGR02917 254 LKKAPNSPLAhyLKALVD--FQKKNYEDARETLQDALK-SAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQ 330
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1079797887 444 AVVKKAELLSREQKYEEGIALLRNALA-NQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPND 508
Cdd:TIGR02917 331 ARRLLASIQLRLGRVDEAIATLSPALGlDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN 396
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
235-370 |
9.88e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.16 E-value: 9.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 235 DNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPylikgmdvygylmareghlEDVEVLG--GRLFnisdqhaepwvisg 312
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP-------------------DNADALLdlAEAL-------------- 61
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1079797887 313 chsFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:COG4235 62 ---LAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLP 116
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
235-527 |
1.36e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.70 E-value: 1.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 235 DNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCH 314
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALV 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 315 SFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMG 394
Cdd:TIGR02917 271 DFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 395 MANNIYKTLGANAQTLTILATVCLEDPVTqEKAKTLLDKALAQRP------------------------DYTKAV----- 445
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEAYLALGDF-EKAAEYLAKATELDPenaaartqlgisklsqgdpseaiaDLETAAqldpe 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 446 VKKAELL-----SREQKYEEGIALLRNALANQSD-CVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPNDQKSLEGMQKM- 518
Cdd:TIGR02917 430 LGRADLLlilsyLRSGQFDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARId 509
|
....*....
gi 1079797887 519 EKEESPTDA 527
Cdd:TIGR02917 510 IQEGNPDDA 518
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
425-508 |
1.59e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 425 EKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LHRMLGDFLVAVNDYQEAMDQYSIALS 503
Cdd:COG4235 34 DEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPeALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
....*
gi 1079797887 504 LDPND 508
Cdd:COG4235 114 LLPAD 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
425-507 |
2.59e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 48.63 E-value: 2.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 425 EKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSL 504
Cdd:COG3063 9 EEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALEL 88
|
...
gi 1079797887 505 DPN 507
Cdd:COG3063 89 DPS 91
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
277-392 |
2.66e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.81 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 277 YGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQ 356
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89
|
90 100 110
....*....|....*....|....*....|....*.
gi 1079797887 357 EAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREA 392
Cdd:COG4783 90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEA 125
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
426-512 |
3.67e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 3.67e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 426 KAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALA-NQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSL 504
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRlDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
....*...
gi 1079797887 505 DPNDQKSL 512
Cdd:COG4235 81 DPDNPEAL 88
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
139-509 |
4.07e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 53.16 E-value: 4.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 139 MMLANLYRKAGQERSAVTSYKEVLRQCPLALDAII--GLLSLSVKGAEVASMTMD-VIQSIPNlDWLSVWIKAYAFIHAG 215
Cdd:TIGR02917 197 LLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLalATILIEAGEFEEAEKHADaLLKKAPN-SPLAHYLKALVDFQKK 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 216 DNQRAINTIcslekKSLLRDNVDLLVSL---ADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEV 292
Cdd:TIGR02917 276 NYEDARETL-----QDALKSAPEYLPALllaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 293 LGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCR 372
Cdd:TIGR02917 351 TLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 373 LDCYEGLIDCYLASNGIREAMGMANNIYKTLGANAQTLTILATVCL--EDPvtqEKAKTLLDKALAQRPDYTKAVVKKAE 450
Cdd:TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLgkGDL---AKAREAFEKALSIEPDFFPAAANLAR 507
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 451 LLSREQKYEEGIALLRNALA-NQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALSLDPNDQ 509
Cdd:TIGR02917 508 IDIQEGNPDDAIQRFEKVLTiDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEI 567
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
425-506 |
2.03e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.95 E-value: 2.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 425 EKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALA-NQSDCVLHRMLGDFLVAVNDYQEAMDQYSIALS 503
Cdd:COG5010 71 EESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALAlSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
...
gi 1079797887 504 LDP 506
Cdd:COG5010 151 TSP 153
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
141-365 |
3.13e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 45.77 E-value: 3.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 141 LANLYRKAGQERSAVTSYKEVLRQCPLALDAIIGLlslsvkgaevasmtmdviqsipnldwlsvwikAYAFIHAGDNQRA 220
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNL--------------------------------GLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 221 INticSLEK-KSLLRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGhledvevlggrlfn 299
Cdd:COG0457 62 LA---DYEQaLELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-------------- 124
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1079797887 300 isdqhaepwvisgchsfyskRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREA 365
Cdd:COG0457 125 --------------------RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKL 170
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
99-392 |
5.76e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.23 E-value: 5.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 99 PSEIEVKYKIAECYTILKLDKDAIAVLDGIPSRQR-TPKINMMLANLYRKAGQERSAVTSYKEVLRQCP-----LALDAI 172
Cdd:TIGR02917 564 PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPdSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPdsalaLLLLAD 643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 173 IGLLSLSVKGAEVA---SMTMDviqsiPNLdWLSVWIKAYAFIHAGDNQRAINTICSLEKKSLLRDNVDLLvsLADVYFR 249
Cdd:TIGR02917 644 AYAVMKNYAKAITSlkrALELK-----PDN-TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL--EGDLYLR 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 250 AGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAR--------------EGHLEDVEV---LGGRL------------FNI 300
Cdd:TIGR02917 716 QKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASgntaeavktleawlKTHPNDAVLrtaLAELYlaqkdydkaikhYQT 795
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 301 SDQHAE--PWVISGCHSFYSKRY-SRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYE 377
Cdd:TIGR02917 796 VVKKAPdnAVVLNNLAWLYLELKdPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRY 875
|
330
....*....|....*
gi 1079797887 378 GLIDCYLASNGIREA 392
Cdd:TIGR02917 876 HLALALLATGRKAEA 890
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
208-531 |
6.33e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 208 AYAFIHAGDNQRAINTICSLEKKSllRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPylikgmdvyGYLMAreghl 287
Cdd:TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP---------DFFPA----- 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 288 edvevlggrLFNISDQHAEPWVISGCHsfysKRYSRALylgakaiQLNSNSVQALL-LKGAALRNmGRVQEAIIHFREAM 366
Cdd:TIGR02917 502 ---------AANLARIDIQEGNPDDAI----QRFEKVL-------TIDPKNLRAILaLAGLYLRT-GNEEEAVAWLEKAA 560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 367 RLAPCRLDCYEGLIDCYLASNGIREAMGMANNIYKTLGANAQTLTILATVCLEDPvTQEKAKTLLDKALAQRPDytkavv 446
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPD------ 633
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 447 kkaellsreqkyeEGIALLRnalanqsdcvlhrmLGDFLVAVNDYQEAMDQYSIALSLDPNDQKSLEGMQKMEKEESPTD 526
Cdd:TIGR02917 634 -------------SALALLL--------------LADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTE 686
|
....*
gi 1079797887 527 ATVEL 531
Cdd:TIGR02917 687 SAKKI 691
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
331-512 |
2.12e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 44.30 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 331 AIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGMANNiyKTLGANAQTL 410
Cdd:TIGR02917 48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPG--KTLLDDEGAA 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 411 TILATV-----CLEDPvtqEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSDCV-LHRMLGDF 484
Cdd:TIGR02917 126 ELLALRglaylGLGQL---ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVdALLLKGDL 202
|
170 180
....*....|....*....|....*...
gi 1079797887 485 LVAVNDYQEAMDQYSIALSLDPNDQKSL 512
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNIAVL 230
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
319-393 |
2.28e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.54 E-value: 2.28e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1079797887 319 KRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIhFREAMRLAPCRLDCYEGLIDCYLASNGIREAM 393
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
316-392 |
2.35e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 2.35e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1079797887 316 FYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREA 392
Cdd:COG5010 65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
246-370 |
3.00e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.15 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 246 VYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGhledvevlggrlfnisdqhaepwvisgchsfyskRYSRAL 325
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG----------------------------------RYDEAI 46
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1079797887 326 YLgAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:COG3063 47 AL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
232-370 |
3.53e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 42.21 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 232 LLRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPylikgmdvygylmareghledvevlggrlfnisdQHAEPWVIS 311
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP----------------------------------DLAEAYNNR 113
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1079797887 312 GCHSFYSKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
256-370 |
9.46e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 9.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 256 AILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVISGCHSFYSKRYSRALYLGAKAIQLN 335
Cdd:COG5010 39 EDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALS 118
|
90 100 110
....*....|....*....|....*....|....*
gi 1079797887 336 SNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:COG5010 119 PDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
232-310 |
1.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 1.15e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1079797887 232 LLRDNVDLLVSLADVYFRAGDTKNAILKFEQAQMLDPYLIKGMDVYGYLMAREGHLEDVEVLGGRLFNISDQHAEPWVI 310
Cdd:COG4235 46 LDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLL 124
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
348-474 |
3.22e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.07 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 348 ALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIREAMGmanniyktlganaqtltilatvcledpvtqeka 427
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA--------------------------------- 47
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1079797887 428 ktlLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQSD 474
Cdd:COG3063 48 ---LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
339-370 |
6.07e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 6.07e-03
10 20 30
....*....|....*....|....*....|..
gi 1079797887 339 VQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDP 32
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
320-472 |
8.61e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.25 E-value: 8.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079797887 320 RYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAMRLAPCRLDCYEGLIDCYLASNGIreamgmanni 399
Cdd:COG5010 35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDK---------- 104
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1079797887 400 yktlganaqtltilatvcledpvtqEKAKTLLDKALAQRPDYTKAVVKKAELLSREQKYEEGIALLRNALANQ 472
Cdd:COG5010 105 -------------------------DEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
339-370 |
8.96e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.04 E-value: 8.96e-03
10 20 30
....*....|....*....|....*....|..
gi 1079797887 339 VQALLLKGAALRNMGRVQEAIIHFREAMRLAP 370
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
|
|
| |
