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Conserved domains on  [gi|1039779388|ref|XP_017177874|]
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U5 small nuclear ribonucleoprotein TSSC4 isoform X1 [Mus musculus]

Protein Classification

TSSC4 domain-containing protein( domain architecture ID 10633753)

TSSC4 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TSSC4 pfam15264
Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is ...
 160-276 4.67e-58

Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is expressed from a gene cluster where in humans the TSSC4 gene is not imprinted. This same cluster is associated with the Beckwith-Wiedermann syndrome. This domain family is found in eukaryotes, and is typically between 120 and 147 amino acids in length. There is a conserved YSL sequence motif.


:

Pssm-ID: 434584  Cd Length: 126  Bit Score: 185.02  E-value: 4.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779388 160 HSIFDCLESAARQAPCSAPQTSVSD---------NGSFRRPVTPPSQTPARGLSRVHGNTGPTRVLPVPDYVSHPERWTK 230
Cdd:pfam15264   1 DSIFDCLEDAAKEAKPTVLDTSKSDpydvdalerESIFKRPLLPPPRCLKRRKGRAHRSPAGPRVPPVPDYVANPEKWTK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1039779388 231 YSLEDVSEASEQSNRDAALAFLSSRSQVSHTDYVPSFNQDPSSCGE 276
Cdd:pfam15264  81 YSLEDVAEMSEQSNTAAALSFLGSRELDAPRDYVPSFNQDPSSCGE 126
 
Name Accession Description Interval E-value
TSSC4 pfam15264
Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is ...
 160-276 4.67e-58

Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is expressed from a gene cluster where in humans the TSSC4 gene is not imprinted. This same cluster is associated with the Beckwith-Wiedermann syndrome. This domain family is found in eukaryotes, and is typically between 120 and 147 amino acids in length. There is a conserved YSL sequence motif.


Pssm-ID: 434584  Cd Length: 126  Bit Score: 185.02  E-value: 4.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779388 160 HSIFDCLESAARQAPCSAPQTSVSD---------NGSFRRPVTPPSQTPARGLSRVHGNTGPTRVLPVPDYVSHPERWTK 230
Cdd:pfam15264   1 DSIFDCLEDAAKEAKPTVLDTSKSDpydvdalerESIFKRPLLPPPRCLKRRKGRAHRSPAGPRVPPVPDYVANPEKWTK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1039779388 231 YSLEDVSEASEQSNRDAALAFLSSRSQVSHTDYVPSFNQDPSSCGE 276
Cdd:pfam15264  81 YSLEDVAEMSEQSNTAAALSFLGSRELDAPRDYVPSFNQDPSSCGE 126
 
Name Accession Description Interval E-value
TSSC4 pfam15264
Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is ...
 160-276 4.67e-58

Tumour suppressing sub-chromosomal transferable candidate 4; This family of proteins is expressed from a gene cluster where in humans the TSSC4 gene is not imprinted. This same cluster is associated with the Beckwith-Wiedermann syndrome. This domain family is found in eukaryotes, and is typically between 120 and 147 amino acids in length. There is a conserved YSL sequence motif.


Pssm-ID: 434584  Cd Length: 126  Bit Score: 185.02  E-value: 4.67e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779388 160 HSIFDCLESAARQAPCSAPQTSVSD---------NGSFRRPVTPPSQTPARGLSRVHGNTGPTRVLPVPDYVSHPERWTK 230
Cdd:pfam15264   1 DSIFDCLEDAAKEAKPTVLDTSKSDpydvdalerESIFKRPLLPPPRCLKRRKGRAHRSPAGPRVPPVPDYVANPEKWTK 80

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 1039779388 231 YSLEDVSEASEQSNRDAALAFLSSRSQVSHTDYVPSFNQDPSSCGE 276
Cdd:pfam15264  81 YSLEDVAEMSEQSNTAAALSFLGSRELDAPRDYVPSFNQDPSSCGE 126
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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