NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039728496|ref|XP_017175515|]
View 

protein PRRC2C isoform X7 [Mus musculus]

Protein Classification

PRCC domain-containing protein( domain architecture ID 10537006)

proline-rich coiled-coil (PRCC) domain-containing protein such as human proline-rich coiled-coil 2A protein (PRRC2A) that may play a role in the regulation of pre-mRNA splicing

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-162 1.60e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


:

Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 172.36  E-value: 1.60e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496    2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496   79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 135
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 1039728496  136 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 162
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1707-1979 5.18e-08

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1707 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1776
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1777 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1854
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1855 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1931
Cdd:PHA03247  2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728496 1932 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1979
Cdd:PHA03247  2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-162 1.60e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 172.36  E-value: 1.60e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496    2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496   79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 135
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 1039728496  136 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 162
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1707-1979 5.18e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1707 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1776
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1777 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1854
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1855 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1931
Cdd:PHA03247  2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728496 1932 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1979
Cdd:PHA03247  2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1749-1880 1.42e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1749 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1827
Cdd:COG3469     69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039728496 1828 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1880
Cdd:COG3469    148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1683-1879 7.37e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 7.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1683 SKKNIGEKGRSQTSKLPPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTapaaaapastpapvpilASATALVPVSTPAP 1762
Cdd:pfam05109  416 THKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPAST-----------------GPTVSTADVTSPTP 478

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1763 VLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSPTPVVSa 1842
Cdd:pfam05109  479 AGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTPTPNAT- 556

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1039728496 1843 TAVPSISTPAVPASAPTASvPLAPASAASTVPPPAST 1879
Cdd:pfam05109  557 SPTPAVTTPTPNATIPTLG-KTSPTSAVTTPTPNATS 592
 
Name Accession Description Interval E-value
BAT2_N pfam07001
BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the ...
 2-162 1.60e-48

BAT2 N-terminus; This family represents the N-terminus (approximately 200 residues) of the proline-rich protein BAT2. BAT2 is similar to other proteins with large proline-rich domains, such as some nuclear proteins, collagens, elastin, and synapsin.


Pssm-ID: 462063 [Multi-domain]  Cd Length: 190  Bit Score: 172.36  E-value: 1.60e-48
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496    2 SEKSGQSTKAKDGK-KYATLSLFNTYKGKSLETQKTT--VAARHGLQSLGKVGISRRmpPPANLPSLKAENKGNDPNVNI 78
Cdd:pfam07001    1 SSTLGQSRKEKDGKpKYTALDINRTYKGESLEPSKQKnvVPRKHGMQSLGKVPSARR--PPANLPSLKAENKGNDPNVSL 78

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496   79 VPKDGTGWASKQEQHEEEK--------------------APEVSPAQPKPGVAAPPEVAPAPKSW--ASNKQGGQGDGI- 135
Cdd:pfam07001   79 VPKDGSGWASKQETPSPKSsqalaavqpeaqqppgsgtsGSNTSPGNPTAHEGPAGTSAAGGKSWaqASTTAGSQGGGGk 158

                          170       180       190
                   ....*....|....*....|....*....|
gi 1039728496  136 ---QVNSQFQQEFPSLQAAGDQEKKEKEAN 162
Cdd:pfam07001  159 gsnQLSPFSQEEFPTLQAAGDQDKSGKENN 188
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1707-1979 5.18e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.18  E-value: 5.18e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1707 ATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCP----------APVPTSAS 1776
Cdd:PHA03247  2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslsesresLPSPWDPA 2805

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1777 APVPASTSSPVTASSSSQPSVPAPTPvlasastTVSVPILTSASIPILASALAPATVSSPTPVVS--ATAVPSISTPAVP 1854
Cdd:PHA03247  2806 DPPAAVLAPAAALPPAASPAGPLPPP-------TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRrrPPSRSPAAKPAAP 2878

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1855 ASAPTASVPlAPASAASTVP---PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDfvAAGKSMP 1931
Cdd:PHA03247  2879 ARPPVRRLA-RPAVSRSTESfalPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD--PAGAGEP 2955

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728496 1932 TSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPS--------VSAWNKPL 1979
Cdd:PHA03247  2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPltghslsrVSSWASSL 3011
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1753-1984 5.10e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.27  E-value: 5.10e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1753 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTSspvtassssqPSVPAPTPVLASASTTVSvPILTSASIPILASALAPAT 1832
Cdd:PRK12323   378 AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAA----------PAAAAAARAVAAAPARRS-PAPEALAAARQASARGPGG 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1833 VSSPTPvvSATAVPsistpaVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPpsapsskqPPPSIRL 1912
Cdd:PRK12323   447 APAPAP--APAAAP------AAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP--------PEFASPA 510

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039728496 1913 PSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISkkLGPISPPQPPSVSAWNKPLTSFGS 1984
Cdd:PRK12323   511 PAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAA--TEPVVAPRPPRASASGLPDMFDGD 580
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1715-1879 7.44e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 54.86  E-value: 7.44e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1715 APPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQ 1794
Cdd:PRK07003   367 APGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1795 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT-------VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPA 1867
Cdd:PRK07003   447 APVPAKANARASADSRCDERDAQPPADSGSASAPASDAppdaafePAPRAAAPSAATPAAVPDARAPAAASREDAPAAAA 526

                          170
                   ....*....|..
gi 1039728496 1868 SAASTVPPPAST 1879
Cdd:PRK07003   527 PPAPEARPPTPA 538
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1716-1933 2.49e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 2.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1716 PPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPV-----PTSASAPV-----PASTSS 1785
Cdd:PHA03247  2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRArrlgrAAQASSPPqrprrRAARPT 2691

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1786 PVTASSSSQPSVPAPTPVLASASTTVSVPILTSasiPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLA 1865
Cdd:PHA03247  2692 VGSLTSLADPPPPPPTPEPAPHALVSATPLPPG---PAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1866 PASAA--STVPPPASTVQTQTQTQTHKPvqsplPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSMPTS 1933
Cdd:PHA03247  2769 PAPPAapAAGPPRRLTRPAVASLSESRE-----SLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1749-1876 9.91e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 9.91e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1749 ASATALVPVSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTtvsVPILTSASIPilaSAL 1828
Cdd:PRK14951   376 AEKKTPARPEAAAPA----AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAA---APAAAPAAAP---AAV 445

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1039728496 1829 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1876
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEE 493
Chi1 COG3469
Chitinase [Carbohydrate transport and metabolism];
1749-1880 1.42e-05

Chitinase [Carbohydrate transport and metabolism];


Pssm-ID: 442692 [Multi-domain]  Cd Length: 534  Bit Score: 50.52  E-value: 1.42e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1749 ASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVlASASTTVSVPILTSASIPILASA- 1827
Cdd:COG3469     69 TAATSSTTSTTATATAAAAAATSTSATLVATSTASGANTGTSTVTTTSTGAGSVT-STTSSTAGSTTTSGASATSSAGSt 147

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039728496 1828 ---------LAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASA---ASTVPPPASTV 1880
Cdd:COG3469    148 tttttvsgtETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSAtttATTTGPPTPGL 212
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1818-1948 3.37e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 3.37e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1818 SASIPILASALAPATVSSPTPvvSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLP 1897
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAAAP--AAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1039728496 1898 PSAPSSKQPPPSIRLPSAQTSNGTDF-VAAGKSMPTSQSHGSLTAEL---WDSKV 1948
Cdd:PRK14951   447 LAPAPPAQAAPETVAIPVRVAPEPAVaSAAPAPAAAPAAARLTPTEEgdvWHATV 501
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1795-1909 4.00e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 49.33  E-value: 4.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1795 PSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPL-APASAASTV 1873
Cdd:PRK14951   366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAaAPAAAPAAV 445

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 1039728496 1874 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPS 1909
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAA 481
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1699-1875 1.36e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 47.56  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1699 PPRFAKKQATGTQQIQAPPSAPVPVS-----SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPT 1773
Cdd:PRK12323   396 APAPAAPPAAPAAAPAAAAAARAVAAaparrSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1774 SASAPVPASTSSPVTASSSSQP-------SVPAPTPVLASASTTVSVpiltSASIPILASALAPATVSSPTPVVSATAVP 1846
Cdd:PRK12323   476 AAAAPARAAPAAAPAPADDDPPpweelppEFASPAPAQPDAAPAGWV----AESIPDPATADPDDAFETLAPAPAAAPAP 551

                          170       180
                   ....*....|....*....|....*....
gi 1039728496 1847 SISTPAVPASAPTasvplAPASAASTVPP 1875
Cdd:PRK12323   552 RAAAATEPVVAPR-----PPRASASGLPD 575
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1794-1915 1.70e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 47.02  E-value: 1.70e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1794 QPSVPAPTPVLASASTTVSVPILTSASIPilASALAPATVSSPtPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1873
Cdd:PRK14951   373 AAPAEKKTPARPEAAAPAAAPVAQAAAAP--APAAAPAAAASA-PAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAP 449

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039728496 1874 PPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSA 1915
Cdd:PRK14951   450 APPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1769-2054 3.21e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 3.21e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1769 APVPTSASAPVPAStsspvtassssQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSI 1848
Cdd:PRK07003   359 EPAVTGGGAPGGGV-----------PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPP 427

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1849 STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGK 1928
Cdd:PRK07003   428 AAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAV 507

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1929 SMPTSQSHGSLTAELWDSKVAAPAVlndiskklgpiSPPQPPSVSAwnkPLTSFGSATSSEGTRNgqeSGVEIGIDTIQF 2008
Cdd:PRK07003   508 PDARAPAAASREDAPAAAAPPAPEA-----------RPPTPAAAAP---AARAGGAAAALDVLRN---AGMRVSSDRGAR 570

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*..
gi 1039728496 2009 GAPASNgnenevvPVLSEKATDKVPEPKEQRQ-KQPRAGPIKAQKLP 2054
Cdd:PRK07003   571 AAAAAK-------PAAAPAAAPKPAAPRVAVQvPTPRARAATGDAPP 610
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 1717-1877 5.64e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.63  E-value: 5.64e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1717 PSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVP-VSTPAPVltscPAPVPTSASAPVPASTSSPVTASSSSQP 1795
Cdd:PRK07994   361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPpPPASAPQ----QAPAVPLPETTSQLLAARQQLQRAQGAT 436

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1796 SVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPsiSTPAVPASAPTAsvpLAPASAASTVPP 1875
Cdd:PRK07994   437 KAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPV--EVKKEPVATPKA---LKKALEHEKTPE 511


                   ..
gi 1039728496 1876 PA 1877
Cdd:PRK07994   512 LA 513
PRK10856 PRK10856
cytoskeleton protein RodZ;
1794-1879 9.85e-04

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 44.25  E-value: 9.85e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1794 QPSVPAPTPVLASASTTVSVPILTSAsipilASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLaPASAASTV 1873
Cdd:PRK10856   172 PATTPAPAAPVDTTPTNSQTPAVATA-----PAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPL-PTDQAGVS 245


                   ....*.
gi 1039728496 1874 PPPAST 1879
Cdd:PRK10856   246 TPAADP 251
PPE COG5651
PPE-repeat protein [Function unknown];
1749-1987 1.15e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 44.11  E-value: 1.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1749 ASATALVPVSTPAPVLTScPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiLTSASIPILASAL 1828
Cdd:COG5651    159 AAAVALTPFTQPPPTITN-PGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIG---LNSGPGNTGFAGT 234

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1829 APATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1908
Cdd:COG5651    235 GAAAGAAAAAAAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGG 314

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039728496 1909 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTaelwdskvAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATS 1987
Cdd:COG5651    315 AAGAAGATGAGAALGAGAAAAAAGAAAGAGAA--------AAAAAGGAGGGGGGALGAGGGGGSAGAAAGAASGGGAAA 385
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1699-1908 1.20e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.46  E-value: 1.20e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1699 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPI--LASATALVPVSTPAPVLTSCPAPVPTSAS 1776
Cdd:PRK07003   405 AAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKAnaRASADSRCDERDAQPPADSGSASAPASDA 484

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1777 APVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASAlAPATVSSPTPVVSATAVPSI-------- 1848
Cdd:PRK07003   485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP-TPAAAAPAARAGGAAAALDVlrnagmrv 563

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039728496 1849 ----STPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1908
Cdd:PRK07003   564 ssdrGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1699-1990 1.39e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 1.39e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1699 PPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPA-PVPTSASA 1777
Cdd:PHA03307    54 TVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPAsPPPSPAPD 133

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1778 PVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSvpiltsasiPILASALAPATVSSPTPVVSATAVPSISTPAvPASA 1857
Cdd:PHA03307   134 LSEMLRPVGSPGPPPAASPPAAGASPAAVASDAAS---------SRQAALPLSSPEETARAPSSPPAEPPPSTPP-AAAS 203

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1858 PTASVPLAPASAASTVPPPAST----VQTQTQTQTHKPVQSPLPPSAPSSKQPPPSIRLPSAQTSNGTDFVAAGKSmPTS 1933
Cdd:PHA03307   204 PRPPRRSSPISASASSPAPAPGrsaaDDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPS-SRP 282

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039728496 1934 QSHGSLTAELWDSKVAAPavlndiSKKLGPISPPQPPSVSAWNKPLTSFGSATSSEG 1990
Cdd:PHA03307   283 GPASSSSSPRERSPSPSP------SSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1760-2150 1.88e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.16  E-value: 1.88e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1760 PAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSA-SIPILASA--------LAP 1830
Cdd:PHA03247  2619 PDTHAPDPPPPSPSPAANEPDPHPPP---------TVPPPERPRDDPAPGRVSRPRRARRlGRAAQASSppqrprrrAAR 2689

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1831 ATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVP-PPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPP-P 1908
Cdd:PHA03247  2690 PTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPaLPAAPAPPAVPAGPATPGGPARPARPPTTAGPPaP 2769

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1909 SIRLPSAQTSNGTDFVAAGKSMPTSQSHGSLTAELWDSKVAAPAVLNDISKKLGPISPPQPPSVSAWNKPLTSFGSATSS 1988
Cdd:PHA03247  2770 APPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPS 2849

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1989 EGTrngqESGVEIGIDTIQFGAPASNGnenEVVPVLSEKATDKVPEPKEQRQKQPRAGPIKAQKLPdlslvenkeHKPGP 2068
Cdd:PHA03247  2850 LPL----GGSVAPGGDVRRRPPSRSPA---AKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP---------PQPQA 2913

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 2069 IGKERSLKNRKVKDAQQVEPEGQEKPSPAVVRSTDPETAKETKAVSEmSAEIGAMISVSSAEYGSDAKESVTDYTTPSSS 2148
Cdd:PHA03247  2914 PPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVP-QPWLGALVPGRVAVPRFRVPQPAPSREAPASS 2992


                   ..
gi 1039728496 2149 LP 2150
Cdd:PHA03247  2993 TP 2994
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1699-1877 2.80e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.33  E-value: 2.80e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1699 PPRFAkkqATGTQQIQAPPSAPVPVSSSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAP 1778
Cdd:PRK12323   374 PATAA---AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1779 VPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASAL--APATVSSPTPVVSATAVPSISTPAVP-- 1854
Cdd:PRK12323   451 APAPAAAPAAAARPAAAG-PRPVAAAAAAAPARAAPAAAPAPADDDPPPWeeLPPEFASPAPAQPDAAPAGWVAESIPdp 529

                          170       180
                   ....*....|....*....|....*
gi 1039728496 1855 --ASAPTASVPLAPASAASTVPPPA 1877
Cdd:PRK12323   530 atADPDDAFETLAPAPAAAPAPRAA 554
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 1748-1876 3.67e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 42.79  E-value: 3.67e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1748 LASATALVPVSTP-----APVLTSCPAPVPTSAS--APVPAsTSSPVTASSSSQPSVpAPTPVLASASTTVSVPILTSAS 1820
Cdd:PHA03269    17 LIIANLNTNIPIPelhtsAATQKPDPAPAPHQAAsrAPDPA-VAPTSAASRKPDLAQ-APTPAASEKFDPAPAPHQAASR 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728496 1821 IPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPP 1876
Cdd:PHA03269    95 APDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPP 150
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1756-1877 3.83e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.67  E-value: 3.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1756 PVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSvPAPTPVLASASTTVSVPILTSASIPILASALAPATvss 1835
Cdd:PRK07764   390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQ-PAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ--- 465

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 1039728496 1836 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPA 1877
Cdd:PRK07764   466 PAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGAD 507
rne PRK10811
ribonuclease E; Reviewed
 1756-1985 3.83e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.72  E-value: 3.83e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1756 PVSTPAPVLTSCPAPVPTSASAPVPASTSSpvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSS 1835
Cdd:PRK10811   862 EEVQVQPVVAEVPVAAAVEPVVSAPVVEAV---------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVIT 932

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1836 PTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTqtqtqthkPVQSPLPPSAPSSKQPPPSIRLPSA 1915
Cdd:PRK10811   933 ESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQP--------AAPVVAEVAAEVETVTAVEPEVAPA 1004

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039728496 1916 QTSNGTDFvaagksmptsqsHGSLTAELwdskVAAPAvlndiskklgPISPPQPPSVSAWNKPLTSF---GSA 1985
Cdd:PRK10811  1005 QVPEATVE------------HNHATAPM----TRAPA----------PEYVPEAPRHSDWQRPTFAFegkGAA 1051
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1768-1880 4.96e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.53  E-value: 4.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1768 PAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSPTPVVSATAVPS 1847
Cdd:PRK07003   373 PARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAA-TRAEAPPAAPAPPATADRGDDAADGDAPVPA 451

                           90       100       110
                   ....*....|....*....|....*....|...
gi 1039728496 1848 ISTPAVPASAPTASVPLAPASAASTVPPPASTV 1880
Cdd:PRK07003   452 KANARASADSRCDERDAQPPADSGSASAPASDA 484
PHA03255 PHA03255
BDLF3; Provisional
 1773-1944 5.03e-03

BDLF3; Provisional


Pssm-ID: 165513 [Multi-domain]  Cd Length: 234  Bit Score: 41.43  E-value: 5.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1773 TSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSAsipiLASALAPATVSSPTPVVSATAVPSISTPA 1852
Cdd:PHA03255    26 SSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTA----ILSTNTTTVTSTGTTVTPVPTTSNASTIN 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1853 VPASApTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPsskqPPPSirlpSAQTSNGTDFVAAGKSMPT 1932
Cdd:PHA03255   102 VTTKV-TAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLA----PTLS----SKGTSNATKTTAELPTVPD 172

                          170
                   ....*....|...
gi 1039728496 1933 SQSHGSLTA-ELW 1944
Cdd:PHA03255   173 ERQPSLSYGlPLW 185
rne PRK10811
ribonuclease E; Reviewed
 1705-1879 5.41e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 42.33  E-value: 5.41e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1705 KQATGTQQIQAPPSAPVPVSSSAPGLTAPAAaapaSTPAPVPILASATALVPVSTPAPVLTSCP---APVPTSASAPVPA 1781
Cdd:PRK10811   851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEP----VVSAPVVEAVAEVVEEPVVVAEPQPEEVVvveTTHPEVIAAPVTE 926

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1782 STSS-PVTASSSSQPSVPAPTPVLASASTTVSVPILTS------ASIPILASALAPATVSSPTPVVSATAVPSISTPAVP 1854
Cdd:PRK10811   927 QPQViTESDVAVAQEVAEHAEPVVEPQDETADIEEAAEtaevvvAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006

                          170       180       190
                   ....*....|....*....|....*....|.
gi 1039728496 1855 ASAPT----ASVPL--APASAASTVPPPAST 1879
Cdd:PRK10811  1007 PEATVehnhATAPMtrAPAPEYVPEAPRHSD 1037
PPE COG5651
PPE-repeat protein [Function unknown];
1715-1879 6.92e-03

PPE-repeat protein [Function unknown];


Pssm-ID: 444372 [Multi-domain]  Cd Length: 385  Bit Score: 41.42  E-value: 6.92e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1715 APPSAPVPVS-SSAPGLTAPAAAAPASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPVPASTSSPVTASSSS 1793
Cdd:COG5651    165 TPFTQPPPTItNPGGLLGAQNAGSGNTSSNPGFANLGLTGLNQVGIGGLNSGSGPIGLNSGPGNTGFAGTGAAAGAAAAA 244

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1794 QPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTV 1873
Cdd:COG5651    245 AAAAAAAGAGASAALASLAATLLNASSLGLAATAASSAATNLGLAGSPLGLAGGGAGAAAATGLGLGAGGAAGAAGATGA 324


                   ....*.
gi 1039728496 1874 PPPAST 1879
Cdd:COG5651    325 GAALGA 330
rne PRK10811
ribonuclease E; Reviewed
 1753-1908 7.09e-03

ribonuclease E; Reviewed


Pssm-ID: 236766 [Multi-domain]  Cd Length: 1068  Bit Score: 41.95  E-value: 7.09e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1753 ALVPVSTPAPVLTSCPAPVPTSASAPVPASTsspvtassssqPSVPAPTPVLASASTTVSVPILTSASIPILASALAPAT 1832
Cdd:PRK10811   861 AEEVQVQPVVAEVPVAAAVEPVVSAPVVEAV-----------AEVVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQ 929

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728496 1833 VSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPPPASTVQTQTQTQTHKPVQSPLPPSAPSSKQPPP 1908
Cdd:PRK10811   930 VITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQ 1005
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1683-1879 7.37e-03

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 41.83  E-value: 7.37e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1683 SKKNIGEKGRSQTSKLPPRFAKKQATGTQQIQAPPSAPVPVSSSAPGLTapaaaapastpapvpilASATALVPVSTPAP 1762
Cdd:pfam05109  416 THKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPAST-----------------GPTVSTADVTSPTP 478

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1763 VLTSCPAPVPTSASAPVPASTSSPVTASSSSQPSVPAPTPVLASASTTVSVPIlTSASIPILASALAPATVSSPTPVVSa 1842
Cdd:pfam05109  479 AGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPT-PNATSPTLGKTSPTSAVTTPTPNAT- 556

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 1039728496 1843 TAVPSISTPAVPASAPTASvPLAPASAASTVPPPAST 1879
Cdd:pfam05109  557 SPTPAVTTPTPNATIPTLG-KTSPTSAVTTPTPNATS 592
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1704-1842 7.45e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 7.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1704 KKQATGTQQIQAPPSAPVPVSssapgltapaaaapASTPAPVPILASATALVPVSTPAPVLTSCPAPVPTSASAPV--PA 1781
Cdd:PRK14951   365 KPAAAAEAAAPAEKKTPARPE--------------AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVaaPA 430

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039728496 1782 STSSPVTASSSSQPSVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSA 1842
Cdd:PRK14951   431 AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
motB PRK12799
flagellar motor protein MotB; Reviewed
 1796-1921 9.50e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 41.24  E-value: 9.50e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728496 1796 SVPAPTPVLASASTTVSVPILTSASIPILASALAPATVSSPTPVVSATAVPSISTPAVPASAPTASVPLAPASAASTVPP 1875
Cdd:PRK12799   298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQ 377

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 1039728496 1876 PASTVQTQtqtqthkpvQSPLPPSAPSSKQPPPSirLPSAQTSNGT 1921
Cdd:PRK12799   378 PMSTTETQ---------QSSTGNITSTANGPTTS--LPAAPASNIP 412
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH