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Conserved domains on  [gi|1039728201|ref|XP_017175098|]
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centrosome and spindle pole associated protein 1 isoform X20 [Mus musculus]

Protein Classification

CCDC34 family protein( domain architecture ID 1003671)

CCDC34 family protein is a DUF4207 domain-containing protein similar to human coiled-coil domain-containing protein 34 (CCDC34)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CCDC34 super family cl37875
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ...
 54-183 6.41e-03

Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.


The actual alignment was detected with superfamily member pfam13904:

Pssm-ID: 464032 [Multi-domain]  Cd Length: 221  Bit Score: 38.53  E-value: 6.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728201  54 QSLQSYQEAL---QEQiREREARRKKERLEKEEYEA---KLEAEMRiYNPWGKGGGGAPLRDAKGNLISPLQTQSSpfar 127
Cdd:pfam13904  52 QPLEAYENWLaakQRQ-RQKELQAQKEEREKEEQEAelrKRLAKEK-YQEWLQRKARQQTKKREESHKQKAAESAS---- 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728201 128 GNTFGEPLSELQIKQQELYKNFLRfqieEKRQREEAEREKLRVAEEKEEKRLAEQR 183
Cdd:pfam13904 126 KSLAKPERKVSQEEAKEVLQEWER----KKLEQQQRKREEEQREQLKKEEEEQERK 177
 
Name Accession Description Interval E-value
CCDC34 pfam13904
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ...
 54-183 6.41e-03

Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.


Pssm-ID: 464032 [Multi-domain]  Cd Length: 221  Bit Score: 38.53  E-value: 6.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728201  54 QSLQSYQEAL---QEQiREREARRKKERLEKEEYEA---KLEAEMRiYNPWGKGGGGAPLRDAKGNLISPLQTQSSpfar 127
Cdd:pfam13904  52 QPLEAYENWLaakQRQ-RQKELQAQKEEREKEEQEAelrKRLAKEK-YQEWLQRKARQQTKKREESHKQKAAESAS---- 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728201 128 GNTFGEPLSELQIKQQELYKNFLRfqieEKRQREEAEREKLRVAEEKEEKRLAEQR 183
Cdd:pfam13904 126 KSLAKPERKVSQEEAKEVLQEWER----KKLEQQQRKREEEQREQLKKEEEEQERK 177
 
Name Accession Description Interval E-value
CCDC34 pfam13904
Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several ...
 54-183 6.41e-03

Coiled-coil domain-containing protein 3; This family is found in eukaryotes; it has several conserved tryptophan residues. The function is not known.


Pssm-ID: 464032 [Multi-domain]  Cd Length: 221  Bit Score: 38.53  E-value: 6.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039728201  54 QSLQSYQEAL---QEQiREREARRKKERLEKEEYEA---KLEAEMRiYNPWGKGGGGAPLRDAKGNLISPLQTQSSpfar 127
Cdd:pfam13904  52 QPLEAYENWLaakQRQ-RQKELQAQKEEREKEEQEAelrKRLAKEK-YQEWLQRKARQQTKKREESHKQKAAESAS---- 125

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039728201 128 GNTFGEPLSELQIKQQELYKNFLRfqieEKRQREEAEREKLRVAEEKEEKRLAEQR 183
Cdd:pfam13904 126 KSLAKPERKVSQEEAKEVLQEWER----KKLEQQQRKREEEQREQLKKEEEEQERK 177
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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