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Conserved domains on  [gi|1039746135|ref|XP_017171504|]
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zinc finger homeobox protein 2 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
2029-2085 2.19e-18

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 81.01  E-value: 2.19e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 2029 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2085
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
Homeodomain pfam00046
Homeodomain;
1822-1878 8.15e-18

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.08  E-value: 8.15e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERK 1878
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
Homeodomain pfam00046
Homeodomain;
1559-1616 4.39e-16

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 4.39e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746135 1559 RRfSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARK 1616
Cdd:pfam00046    1 RR-KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
COG5576 super family cl35021
Homeodomain-containing transcription factor [Transcription];
1788-1914 1.39e-09

Homeodomain-containing transcription factor [Transcription];


The actual alignment was detected with superfamily member COG5576:

Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 58.99  E-value: 1.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1788 SVTGTPLKRKHDDGSlsptgseaggggegEPPKDKRLRTTilPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQV 1867
Cdd:COG5576     34 AADSEMKLERKQDGS--------------SPPKSKRRRTT--DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQI 97

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1868 WFQNTRARERK---GQFRSTPGGVAGPAVKPTVPPSPAPFPKFNLLLSKI 1914
Cdd:COG5576     98 WFQNKRAKEKKkrsGKVEQRPGEEEADLAKIGSLSTGQISIIETLEFSRT 147
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 2156-2270 2.40e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 2.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 2156 PAPETPLAPKGP--PATTPASSVPlgASPTLPRlAPVLLPGPTLAQPPLGSIA-SFNSGPAASSGLLGLATSVLPATTVV 2232
Cdd:PHA03247  2743 AVPAGPATPGGParPARPPTTAGP--PAPAPPA-APAAGPPRRLTRPAVASLSeSRESLPSPWDPADPPAAVLAPAAALP 2819

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039746135 2233 QTAGPGRPLPQRPVSNQTNSSTDPTPGPATEPSGDKVS 2270
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
501-525 9.63e-04

C2H2-type zinc-finger domain;


:

Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.30  E-value: 9.63e-04
                           10        20
                   ....*....|....*....|....*
gi 1039746135  501 YRCDVCNYSTTTKGNLSIHMQsdKH 525
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLR--KH 23
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1717-1990 2.26e-03

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1717 SKESEGKAPPSPPvyacdqcAASFPSQDlltthhrlHLLPSVQPsAPPPSQlldlPLLVFGERNPVVSGTSSVTGTPLKR 1796
Cdd:PHA03247  2545 SDDAGDPPPPLPP-------AAPPAAPD--------RSVPPPRP-APRPSE----PAVTSRARRPDAPPQSARPRAPVDD 2604

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1797 KHDD-GSLSPTGSEAGGGGEGEPPKDKRLRTTILPEQLEilyrwyMQDSNPTRKMLDCISEEVGLKKRvvqvwfqnTRAR 1875
Cdd:PHA03247  2605 RGDPrGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP------PTVPPPERPRDDPAPGRVSRPRR--------ARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1876 ERKGQFRSTPGGVAGPAVKPTV----------PPSPAPFPKFNLLLSKIEDETGKEAPKRDAPAFPYPTVTPAVGPLPFL 1945
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTVgsltsladppPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT 2750

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1039746135 1946 PPGKEAAVPTPEPPPPLPPPALSEDEGPEEPSKASPESEACSPSA 1990
Cdd:PHA03247  2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
2029-2085 2.19e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 81.01  E-value: 2.19e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 2029 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2085
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
Homeodomain pfam00046
Homeodomain;
1822-1878 8.15e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.08  E-value: 8.15e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERK 1878
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1822-1880 2.55e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.97  E-value: 2.55e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746135 1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQ 1880
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1822-1877 3.59e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 74.59  E-value: 3.59e-16
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746135  1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARER 1877
Cdd:smart00389    2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
1559-1616 4.39e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 4.39e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746135 1559 RRfSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARK 1616
Cdd:pfam00046    1 RR-KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 2029-2087 5.46e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.12  E-value: 5.46e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746135 2029 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAK 2087
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 2028-2084 6.51e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 6.51e-15
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135  2028 QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEK 2084
Cdd:smart00389    1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1559-1615 1.34e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 69.97  E-value: 1.34e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135  1559 RRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKAR 1615
Cdd:smart00389    1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1560-1617 2.02e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.58  E-value: 2.02e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746135 1560 RFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARKN 1617
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
2028-2087 8.61e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 59.76  E-value: 8.61e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 2028 QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAK 2087
Cdd:COG5576     51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1788-1914 1.39e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 58.99  E-value: 1.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1788 SVTGTPLKRKHDDGSlsptgseaggggegEPPKDKRLRTTilPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQV 1867
Cdd:COG5576     34 AADSEMKLERKQDGS--------------SPPKSKRRRTT--DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQI 97

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1868 WFQNTRARERK---GQFRSTPGGVAGPAVKPTVPPSPAPFPKFNLLLSKI 1914
Cdd:COG5576     98 WFQNKRAKEKKkrsGKVEQRPGEEEADLAKIGSLSTGQISIIETLEFSRT 147
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1540-1622 1.15e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 56.29  E-value: 1.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1540 PSEEEEGSRGSLPPAvpvgrrfSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARKNAC 1619
Cdd:COG5576     39 MKLERKQDGSSPPKS-------KRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111


                   ...
gi 1039746135 1620 EGG 1622
Cdd:COG5576    112 GKV 114
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2156-2270 2.40e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 2.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 2156 PAPETPLAPKGP--PATTPASSVPlgASPTLPRlAPVLLPGPTLAQPPLGSIA-SFNSGPAASSGLLGLATSVLPATTVV 2232
Cdd:PHA03247  2743 AVPAGPATPGGParPARPPTTAGP--PAPAPPA-APAAGPPRRLTRPAVASLSeSRESLPSPWDPADPPAAVLAPAAALP 2819

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039746135 2233 QTAGPGRPLPQRPVSNQTNSSTDPTPGPATEPSGDKVS 2270
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
501-525 9.63e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.30  E-value: 9.63e-04
                           10        20
                   ....*....|....*....|....*
gi 1039746135  501 YRCDVCNYSTTTKGNLSIHMQsdKH 525
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLR--KH 23
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1717-1990 2.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1717 SKESEGKAPPSPPvyacdqcAASFPSQDlltthhrlHLLPSVQPsAPPPSQlldlPLLVFGERNPVVSGTSSVTGTPLKR 1796
Cdd:PHA03247  2545 SDDAGDPPPPLPP-------AAPPAAPD--------RSVPPPRP-APRPSE----PAVTSRARRPDAPPQSARPRAPVDD 2604

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1797 KHDD-GSLSPTGSEAGGGGEGEPPKDKRLRTTILPEQLEilyrwyMQDSNPTRKMLDCISEEVGLKKRvvqvwfqnTRAR 1875
Cdd:PHA03247  2605 RGDPrGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP------PTVPPPERPRDDPAPGRVSRPRR--------ARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1876 ERKGQFRSTPGGVAGPAVKPTV----------PPSPAPFPKFNLLLSKIEDETGKEAPKRDAPAFPYPTVTPAVGPLPFL 1945
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTVgsltsladppPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT 2750

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1039746135 1946 PPGKEAAVPTPEPPPPLPPPALSEDEGPEEPSKASPESEACSPSA 1990
Cdd:PHA03247  2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
2029-2085 2.19e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 81.01  E-value: 2.19e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 2029 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKK 2085
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
Homeodomain pfam00046
Homeodomain;
1822-1878 8.15e-18

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 79.08  E-value: 8.15e-18
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135 1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERK 1878
Cdd:pfam00046    1 RRKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1822-1880 2.55e-16

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 74.97  E-value: 2.55e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746135 1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARERKGQ 1880
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1822-1877 3.59e-16

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 74.59  E-value: 3.59e-16
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*.
gi 1039746135  1822 KRLRTTILPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQVWFQNTRARER 1877
Cdd:smart00389    2 RRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
Homeodomain pfam00046
Homeodomain;
1559-1616 4.39e-16

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 74.46  E-value: 4.39e-16
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746135 1559 RRfSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARK 1616
Cdd:pfam00046    1 RR-KRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 2029-2087 5.46e-15

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 71.12  E-value: 5.46e-15
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 1039746135 2029 RRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAK 2087
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 2028-2084 6.51e-15

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 71.13  E-value: 6.51e-15
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135  2028 QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEK 2084
Cdd:smart00389    1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 1559-1615 1.34e-14

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 69.97  E-value: 1.34e-14
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 1039746135  1559 RRFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKAR 1615
Cdd:smart00389    1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 1560-1617 2.02e-14

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 69.58  E-value: 2.02e-14
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*...
gi 1039746135 1560 RFSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARKN 1617
Cdd:cd00086      1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
2028-2087 8.61e-10

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 59.76  E-value: 8.61e-10
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 2028 QRRYRTQMSSLQLKIMKACYEAYRTPTMQECEVLGEEIGLPKRVIQVWFQNARAKEKKAK 2087
Cdd:COG5576     51 PKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKR 110
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1788-1914 1.39e-09

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 58.99  E-value: 1.39e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1788 SVTGTPLKRKHDDGSlsptgseaggggegEPPKDKRLRTTilPEQLEILYRWYMQDSNPTRKMLDCISEEVGLKKRVVQV 1867
Cdd:COG5576     34 AADSEMKLERKQDGS--------------SPPKSKRRRTT--DEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQI 97

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1868 WFQNTRARERK---GQFRSTPGGVAGPAVKPTVPPSPAPFPKFNLLLSKI 1914
Cdd:COG5576     98 WFQNKRAKEKKkrsGKVEQRPGEEEADLAKIGSLSTGQISIIETLEFSRT 147
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
1540-1622 1.15e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 56.29  E-value: 1.15e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1540 PSEEEEGSRGSLPPAvpvgrrfSRTKFTEFQTQALQSFFETSAYPKDGEVERLASLLGLASRVVVVWFQNARQKARKNAC 1619
Cdd:COG5576     39 MKLERKQDGSSPPKS-------KRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKKRS 111


                   ...
gi 1039746135 1620 EGG 1622
Cdd:COG5576    112 GKV 114
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2156-2270 2.40e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 2.40e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 2156 PAPETPLAPKGP--PATTPASSVPlgASPTLPRlAPVLLPGPTLAQPPLGSIA-SFNSGPAASSGLLGLATSVLPATTVV 2232
Cdd:PHA03247  2743 AVPAGPATPGGParPARPPTTAGP--PAPAPPA-APAAGPPRRLTRPAVASLSeSRESLPSPWDPADPPAAVLAPAAALP 2819

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1039746135 2233 QTAGPGRPLPQRPVSNQTNSSTDPTPGPATEPSGDKVS 2270
Cdd:PHA03247  2820 PAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVA 2857
zf-H2C2_5 pfam13909
C2H2-type zinc-finger domain;
501-525 9.63e-04

C2H2-type zinc-finger domain;


Pssm-ID: 404746 [Multi-domain]  Cd Length: 25  Bit Score: 38.30  E-value: 9.63e-04
                           10        20
                   ....*....|....*....|....*
gi 1039746135  501 YRCDVCNYSTTTKGNLSIHMQsdKH 525
Cdd:pfam13909    1 YKCSQCDYSTAWKSNLKRHLR--KH 23
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1717-1990 2.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.77  E-value: 2.26e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1717 SKESEGKAPPSPPvyacdqcAASFPSQDlltthhrlHLLPSVQPsAPPPSQlldlPLLVFGERNPVVSGTSSVTGTPLKR 1796
Cdd:PHA03247  2545 SDDAGDPPPPLPP-------AAPPAAPD--------RSVPPPRP-APRPSE----PAVTSRARRPDAPPQSARPRAPVDD 2604

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1797 KHDD-GSLSPTGSEAGGGGEGEPPKDKRLRTTILPEQLEilyrwyMQDSNPTRKMLDCISEEVGLKKRvvqvwfqnTRAR 1875
Cdd:PHA03247  2605 RGDPrGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP------PTVPPPERPRDDPAPGRVSRPRR--------ARRL 2670

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039746135 1876 ERKGQFRSTPGGVAGPAVKPTV----------PPSPAPFPKFNLLLSKIEDETGKEAPKRDAPAFPYPTVTPAVGPLPFL 1945
Cdd:PHA03247  2671 GRAAQASSPPQRPRRRAARPTVgsltsladppPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPAT 2750

                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 1039746135 1946 PPGKEAAVPTPEPPPPLPPPALSEDEGPEEPSKASPESEACSPSA 1990
Cdd:PHA03247  2751 PGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR 2795
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 501-525 8.76e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 35.93  E-value: 8.76e-03
                           10        20
                   ....*....|....*....|....*
gi 1039746135  501 YRCDVCNYSTTTKGNLSIHMQSDKH 525
Cdd:pfam12874    1 FYCELCNVTFNSESQLKSHLQGKKH 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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