|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
896-1760 |
8.36e-31 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 132.51 E-value: 8.36e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 896 GAIYRKLGKLQSAMNDLQEAIFQ--EPFFLNAYWHRhfIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI--FREKD 971
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLgyPKNQVLPLLAR--AYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLayLGLGQ 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 972 ITLAILNYSQAIKCRPKDADL----------YFKRGEMYEKTNKVLAIDDyskciyynrKRSDALWKRGMFYFENGNWIG 1041
Cdd:TIGR02917 141 LELAQKSYEQALAIDPRSLYAklglaqlalaENRFDEARALIDEVLTADP---------GNVDALLLKGDLLLSLGNIEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1042 AVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDYSVSVLIN 1120
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYEDARETLQDALKSA 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1121 DGYdnLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIK---VDPLYLQS 1197
Cdd:TIGR02917 292 PEY--LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLR-LGRVDEAIATLSPALGldpDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1198 YicrAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKgiiEMSPIQEALIYSFC 1277
Cdd:TIGR02917 369 L---GEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP---ELGRADLLLILSYL 442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1278 ENH--DKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEE 1354
Cdd:TIGR02917 443 RSGqfDKALAAAKKLEKKQPDnASLHNLLGAIYLGKGDLAKAREAFEKALSI----------EPDFFPAAANLARIDIQE 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1355 GNFQMAFESFTKAVKANPEFAEAfyHRGLCKVKL---NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNC 1431
Cdd:TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRA--ILALAGLYLrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1432 NEAIKLYPESVRAYicrgvlkyynrtyklgitdlstaikmdknnytayynralcytkigehqmalrdygivLLLdageni 1511
Cdd:TIGR02917 591 NEAADAAPDSPEAW---------------------------------------------------------LML------ 607
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1512 alntlinrGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSY 1591
Cdd:TIGR02917 608 --------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1592 MEYSQEDAMIQAQKDFLKAlhldpsclkarislgYNLQAQGKFQKAWIHFTVGiesnpksylayegravvclqmsNYFAA 1671
Cdd:TIGR02917 680 LAAKRTESAKKIAKSLQKQ---------------HPKAALGFELEGDLYLRQK----------------------DYPAA 722
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1672 MQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPE 1751
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPD 802
|
....*....
gi 1039741865 1752 NEYALMNRA 1760
Cdd:TIGR02917 803 NAVVLNNLA 811
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1685-1852 |
8.81e-30 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 119.73 E-value: 8.81e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 1764
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1765 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 1844
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
....*...
gi 1039741865 1845 NQALDLEE 1852
Cdd:COG0457 168 EKLEAAAL 175
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1341-1541 |
3.74e-29 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 117.80 E-value: 3.74e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRyEEALADYEQALELDPDDAEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDY 1499
Cdd:COG0457 88 ALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELL 167
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039741865 1500 GIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG0457 168 EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1645-1852 |
4.78e-28 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 114.72 E-value: 4.78e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1645 IESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYF 1723
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1724 NAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKY 1803
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1039741865 1804 KLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLEE 1852
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1611-1852 |
5.48e-27 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 111.64 E-value: 5.48e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1611 LHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLT 1689
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDpDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1690 NRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKY 1769
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1770 EEAEKDFscAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALD 1849
Cdd:COG0457 161 EEALELL--EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAAL 238
|
...
gi 1039741865 1850 LEE 1852
Cdd:COG0457 239 ALY 241
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1368-1540 |
1.09e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 110.87 E-value: 1.09e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1368 VKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYI 1446
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRyEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1447 CRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTEL 1526
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY---NLGIALEKL 157
|
170
....*....|....
gi 1039741865 1527 KQYGFALEDFKQAA 1540
Cdd:COG0457 158 GRYEEALELLEKLE 171
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1291-1542 |
1.17e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1291 IASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsDKGpvatsvSAECLYNLGLCYMEEGNFQMAFESFTKAVK 1369
Cdd:COG0457 1 LELDPDdAEAYNNLGLAYRRLGRYEEAIEDYEKALEL----DPD------DAEALYNLGLAYLRLGRYEEALADYEQALE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1370 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 1448
Cdd:COG0457 71 LDPDDAEALNNLGLALQALGRyEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNL 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1449 GVLKYYNRTYKLGITDLstaikmDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQ 1528
Cdd:COG0457 151 GIALEKLGRYEEALELL------EKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224
|
250
....*....|....
gi 1039741865 1529 YGFALEDFKQAALM 1542
Cdd:COG0457 225 LALALLLALRLAAL 238
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1401-1639 |
1.28e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 102.01 E-value: 1.28e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1401 LTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYY 1480
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1481 NRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRI 1560
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALY---NLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741865 1561 KEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWI 1639
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLA 236
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1519-1782 |
1.57e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 99.42 E-value: 1.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1519 RGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQED 1598
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1599 amiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCA 1678
Cdd:COG2956 94 ---RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1679 IKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEyALM 1757
Cdd:COG2956 171 LKLDPDcARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD-LLL 249
|
250 260
....*....|....*....|....*
gi 1039741865 1758 NRAVTNSVLKKYEEAEKDFSCAMER 1782
Cdd:COG2956 250 ALADLLERKEGLEAALALLERQLRR 274
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1554-1740 |
1.92e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.54 E-value: 1.92e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1554 ATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGK 1633
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYE---EALADYEQALELDPDDAEALNNLGLALQALGR 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1634 FQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAI 1712
Cdd:COG0457 92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDpDDADALYNLGIALEKLGRYEEALELLEKLE 171
|
170 180
....*....|....*....|....*...
gi 1039741865 1713 SLNPSYSLAYFNAGNIYLHHRQFSQASD 1740
Cdd:COG0457 172 AAALAALLAAALGEAALALAAAEVLLAL 199
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1271-1440 |
2.43e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 98.16 E-value: 2.43e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1271 ALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGL 1349
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALEL----------DPDDAEALNNLGL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1350 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAI 1428
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRyDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEAL 164
|
170
....*....|..
gi 1039741865 1429 LNCNEAIKLYPE 1440
Cdd:COG0457 165 ELLEKLEAAALA 176
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1562-1848 |
4.09e-22 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 98.26 E-value: 4.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1562 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHF 1641
Cdd:COG2956 23 QPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRI---HQKLLERDPDRAEALLELAQDYLKAGLLDRAEELL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1642 TVGIESNPKSYLAyegravvclqmsnyfaamqdincaikinstaefLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLA 1721
Cdd:COG2956 100 EKLLELDPDDAEA---------------------------------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1722 YFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLK 1801
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLG 226
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1039741865 1802 KYKLAEEDLGIGLSLKPDEAIMYNLrAQVRGKMGLIAEAMSDYNQAL 1848
Cdd:COG2956 227 DPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQL 272
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1618-1849 |
5.02e-22 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 96.52 E-value: 5.02e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1618 LKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEF 1697
Cdd:COG4785 6 LALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1698 MGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFS 1777
Cdd:COG4785 86 LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1778 CAMERCPHWAALYFNRAsFYVYLKKYKLAEEDLgiglslkpDEAIMYNLRAQvrgkmGLIAEAMSDYNQALD 1849
Cdd:COG4785 166 KALELDPNDPERALWLY-LAERKLDPEKALALL--------LEDWATAYLLQ-----GDTEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
951-1113 |
5.47e-22 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 97.00 E-value: 5.47e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 951 KYNKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWK 1028
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRRlGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDPDDAEALNN 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY- 1107
Cdd:COG0457 82 LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYe 161
|
....*.
gi 1039741865 1108 RALQDY 1113
Cdd:COG0457 162 EALELL 167
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1268-1577 |
5.02e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.18 E-value: 5.02e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1268 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELytfsdkgpvaTSVSAECLYN 1346
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPEtVEAHLALGNLYRRRGEYDRAIRIHQKLLER----------DPDRAEALLE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1347 LGLCYMEEGNFQmafesftKAVKAnpefaeafyhrglckvklnkqnsildFNRALTLNPKHYQAYLSRVAYYGLKGRYSK 1426
Cdd:COG2956 82 LAQDYLKAGLLD-------RAEEL--------------------------LEKLLELDPDDAEALRLLAEIYEQEGDWEK 128
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1427 AILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLD 1506
Cdd:COG2956 129 AIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD 208
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741865 1507 AGENIALNTLinrGLIYTELKQYGFALEDFKQaALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKIN 1577
Cdd:COG2956 209 PDYLPALPRL---AELYEKLGDPEEALELLRK-ALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1418-1637 |
7.97e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 94.41 E-value: 7.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1418 YGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLkyYNRT--YKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMA 1495
Cdd:COG2956 18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNL--YRRRgeYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1496 LRDYGIVLLLDAGENIALNTLINrglIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIK 1575
Cdd:COG2956 96 EELLEKLLELDPDDAEALRLLAE---IYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALK 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1576 INPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKA 1637
Cdd:COG2956 173 LDPDCARALLLLAELYLEQGDYE---EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA 231
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1029-1327 |
2.19e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 93.26 E-value: 2.19e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1029 RGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKS-SPY 1107
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAgLLD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1108 RALQDYSVsvLINDGYDNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEA 1187
Cdd:COG2956 94 RAEELLEK--LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLE-QGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1188 IKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQfllmmksydlakftiyqvaemnkgiiemsp 1267
Cdd:COG2956 171 LKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE------------------------------ 220
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1268 iqealIYSFCENHDKAIHILEGVIASKPDISTYALLAKAQMKAKRIKESVRLFKKALELY 1327
Cdd:COG2956 221 -----LYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1458-1851 |
2.24e-20 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 98.62 E-value: 2.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1458 YKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENiALNTLINRglIYTELKQYGFALEDF- 1536
Cdd:TIGR02917 38 YKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKN-QVLPLLAR--AYLLQGKFQQVLDELp 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1537 KQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 1616
Cdd:TIGR02917 115 GKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFD---EARALIDEVLTADPG 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1617 CLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKI---NSTAEFLtnRGV 1693
Cdd:TIGR02917 192 NVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKapnSPLAHYL--KAL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1694 IHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAE 1773
Cdd:TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAI 349
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741865 1774 KDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 1851
Cdd:TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
937-1113 |
3.21e-20 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 91.52 E-value: 3.21e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 937 DKVNDALDDLNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKC 1015
Cdd:COG4785 20 SKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYdLAIADFDQA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1016 IYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALY 1095
Cdd:COG4785 100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL 179
|
170
....*....|....*...
gi 1039741865 1096 YRACLFRKSSPYRALQDY 1113
Cdd:COG4785 180 WLYLAERKLDPEKALALL 197
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
932-1225 |
3.54e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 92.48 E-value: 3.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 932 IYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAI 1009
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRgEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLdRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1010 DDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN 1089
Cdd:COG2956 97 ELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPD 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1090 NWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLAICDFETVVSLERNATLAYINIGII 1169
Cdd:COG2956 177 CARALLLLAEL------YLEQGDYE-----------------------------EAIAALERALEQDPDYLPALPRLAEL 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1170 YlEHLDNYTEAFWWFTEAIKVDPLYLQsYICRAETYSKLHKLKRAVIELTRAIHLQ 1225
Cdd:COG2956 222 Y-EKLGDPEEALELLRKALELDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1462-1715 |
6.36e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 91.71 E-value: 6.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1462 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELKQYGFALEDFKQAAL 1541
Cdd:COG2956 28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLEL---AQDYLKAGLLDRAEELLEKLLE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1542 MSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKAR 1621
Cdd:COG2956 105 LDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD---EAIEALEKALKLDPDCARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1622 ISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQ 1701
Cdd:COG2956 182 LLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGL 261
|
250
....*....|....
gi 1039741865 1702 QSAMADYQAAISLN 1715
Cdd:COG2956 262 EAALALLERQLRRH 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1050-1249 |
7.54e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 90.84 E-value: 7.54e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1050 LKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNC 1128
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYeEALADYEQALELDP--DDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1129 FLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKL 1208
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039741865 1209 HKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAK 1249
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLA 198
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1409-1851 |
7.13e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.61 E-value: 7.13e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1409 QAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESV-------RAYICRGVL----KYYNRTYKLGitdlstaikMDKNNYT 1477
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAearfllgKIYLALGDYaaaeKELRKALSLG---------YPKNQVL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1478 AYYNRAlcYTKIGEHQMALRDYGIVLLLDAGENIALNTLinRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCH 1557
Cdd:TIGR02917 94 PLLARA--YLLQGKFQQVLDELPGKTLLDDEGAAELLAL--RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1558 HRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNsyMEYSQEDaMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKA 1637
Cdd:TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGD--LLLSLGN-IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1638 WIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN--------------------STAEFLTNR------ 1691
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSApeylpalllagaseyqlgnlEQAYQYLNQilkyap 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1692 ---------GVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVT 1762
Cdd:TIGR02917 327 nshqarrllASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGIS 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1763 NSVLKKYEEAEKDFSCAMERCPHwaalyFNRASFYVYLKKYKLAEEDLGI-----GLSLKPDEAIMYNLRAQVRGKMGLI 1837
Cdd:TIGR02917 407 KLSQGDPSEAIADLETAAQLDPE-----LGRADLLLILSYLRSGQFDKALaaakkLEKKQPDNASLHNLLGAIYLGKGDL 481
|
490
....*....|....
gi 1039741865 1838 AEAMSDYNQALDLE 1851
Cdd:TIGR02917 482 AKAREAFEKALSIE 495
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
887-1076 |
7.36e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 88.14 E-value: 7.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVY 1044
Cdd:COG0457 86 LQAlGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALE 165
|
170 180 190
....*....|....*....|....*....|..
gi 1039741865 1045 DFTSLLKLDPYNSKARTYRGRAYFKRNLYKQA 1076
Cdd:COG0457 166 LLEKLEAAALAALLAAALGEAALALAAAEVLL 197
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1144-1852 |
8.46e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 8.46e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1144 LAICDFETVVSLERNATlAYINIGiiylehldNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIH 1223
Cdd:TIGR02917 14 LSACGDQSPEELIEAAK-SYLQKN--------KYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALS 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1224 LQPDAIHLYIMRGQFLLMMKSYDLAkftiyqvaemnkgiIEMSPIQEALiysfceNHDKAIHILegviaskpdistyALL 1303
Cdd:TIGR02917 85 LGYPKNQVLPLLARAYLLQGKFQQV--------------LDELPGKTLL------DDEGAAELL-------------ALR 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1304 AKAQMKAKRIKESVRLFKKALElytfsdKGPVATSVSaeclynLGLCY--MEEGNFQMAFESFTKAVKANPEFAEAFYHR 1381
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALA------IDPRSLYAK------LGLAQlaLAENRFDEARALIDEVLTADPGNVDALLLK 199
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1382 G-LCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKL 1460
Cdd:TIGR02917 200 GdLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYED 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1461 GITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELKQYGFALEDFKQAA 1540
Cdd:TIGR02917 280 ARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLL---ASIQLRLGRVDEAIATLSPAL 356
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1541 LMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMeySQEDAMiQAQKDFLKALHLDPSCLKA 1620
Cdd:TIGR02917 357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKL--SQGDPS-EAIADLETAAQLDPELGRA 433
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1621 RISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEF-LTNRGVIHEFMG 1699
Cdd:TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPaAANLARIDIQEG 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1700 QQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRA---VTNSVLKKYEEAEKDF 1776
Cdd:TIGR02917 514 NPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAqyyLGKGQLKKALAILNEA 593
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741865 1777 SCAMERCPH-WAALyfnrASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLEE 1852
Cdd:TIGR02917 594 ADAAPDSPEaWLML----GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKP 666
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1024-1848 |
9.45e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 9.45e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1024 DALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:TIGR02917 23 EELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1104 SSPYRALQDYSVSVLINDGYDNLNCFLHRGILYTQLKFWMLAICDFETvvSLERNATLAYINIGIIYLEHLDN-YTEAFW 1182
Cdd:TIGR02917 103 QGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQ--ALAIDPRSLYAKLGLAQLALAENrFDEARA 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1183 WFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAkftiyqvaemnkgi 1262
Cdd:TIGR02917 181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-------------- 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1263 iemspiqealiysfcENHdkaihiLEGVIASKPDiSTYALLAKAQMKAKRIKesvrlFKKALElytfsdkgPVATSVSA- 1341
Cdd:TIGR02917 247 ---------------EKH------ADALLKKAPN-SPLAHYLKALVDFQKKN-----YEDARE--------TLQDALKSa 291
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1342 ----ECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSIL-DFNRALTLNPKHYQAYLSRVA 1416
Cdd:TIGR02917 292 peylPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIaTLSPALGLDPDDPAALSLLGE 371
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1417 YYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMAL 1496
Cdd:TIGR02917 372 AYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKAL 451
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1497 RdygIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKI 1576
Cdd:TIGR02917 452 A---AAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1577 NPHYVDA-------YIGRGNSymeysqEDAMIqaqkdFL-KALHLDPSCLKARISLGYNLQAQGKFQKAwihftvgiESN 1648
Cdd:TIGR02917 529 DPKNLRAilalaglYLRTGNE------EEAVA-----WLeKAAELNPQEIEPALALAQYYLGKGQLKKA--------LAI 589
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1649 PKSYLAYEGRAVVCLQM--SNYFAAmqdincaikinstaefltnrgvihefmGQQQSAMADYQAAISLNPSYSLAYFNAG 1726
Cdd:TIGR02917 590 LNEAADAAPDSPEAWLMlgRAQLAA---------------------------GDLNKAVSSFKKLLALQPDSALALLLLA 642
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1727 NIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLA 1806
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAA 722
|
810 820 830 840
....*....|....*....|....*....|....*....|..
gi 1039741865 1807 EEDLGIGLSLKPDEAIMYNLrAQVRGKMGLIAEAMSDYNQAL 1848
Cdd:TIGR02917 723 IQAYRKALKRAPSSQNAIKL-HRALLASGNTAEAVKTLEAWL 763
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1685-1857 |
1.74e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 91.98 E-value: 1.74e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 1764
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1765 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDY 1844
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237
|
170
....*....|...
gi 1039741865 1845 NQALDLEECSTAM 1857
Cdd:COG3914 238 ELLAALARGPSEL 250
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
983-1224 |
1.86e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 86.98 E-value: 1.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 983 IKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKART 1061
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYeEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1062 YRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPY-RALQDYSVSVLINDgyDNLNCFLHRGILYTQLK 1140
Cdd:COG0457 81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYdEAIEAYERALELDP--DDADALYNLGIALEKLG 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1141 FWMLAICDFEtvvSLERNATLAYINIGIIYLEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTR 1220
Cdd:COG0457 159 RYEEALELLE---KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRL 235
|
....
gi 1039741865 1221 AIHL 1224
Cdd:COG0457 236 AALA 239
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1370-1493 |
2.12e-18 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 86.12 E-value: 2.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1370 ANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICR 1448
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDyDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1039741865 1449 GVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQ 1493
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEK 192
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1584-1857 |
2.32e-18 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.09 E-value: 2.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1584 YIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVcl 1663
Cdd:COG2956 11 WYFKGLNYLLNGQPD---KAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD-- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1664 qmsnYFAAmqdincaikinstaefltnrgvihefmGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFS 1743
Cdd:COG2956 86 ----YLKA---------------------------GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLE 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1744 TALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIM 1823
Cdd:COG2956 135 RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPA 214
|
250 260 270
....*....|....*....|....*....|....
gi 1039741865 1824 YNLRAQVRGKMGLIAEAMSDYNQALDLEECSTAM 1857
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1685-1820 |
2.40e-18 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 83.32 E-value: 2.40e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 1764
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1765 VLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDE 1820
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
895-1495 |
2.58e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 88.60 E-value: 2.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 895 RGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-FREKDIT 973
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVdFQKKNYE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 974 LAILNYSQAIKCRPK--DADLY-----FKRGEM---YEKTNKVLAIDDYSkciyYNRKRSDAlwkrgMFYFENGNWIGAV 1043
Cdd:TIGR02917 279 DARETLQDALKSAPEylPALLLagaseYQLGNLeqaYQYLNQILKYAPNS----HQARRLLA-----SIQLRLGRVDEAI 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1044 YDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNwVALYYRACLF-----RKSSPYRALQDYS---- 1114
Cdd:TIGR02917 350 ATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPEN-AAARTQLGISklsqgDPSEAIADLETAAqldp 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1115 ----VSVLINDGY---------------------DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERN-----ATLAYI 1164
Cdd:TIGR02917 429 elgrADLLLILSYlrsgqfdkalaaakklekkqpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDffpaaANLARI 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1165 NIG---------------IIYLEHLD-------------NYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVI 1216
Cdd:TIGR02917 509 DIQegnpddaiqrfekvlTIDPKNLRailalaglylrtgNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALA 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1217 ELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEmSPIQEALIYSFCENHDKAIHILEGVIASKPD 1296
Cdd:TIGR02917 589 ILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSAL-ALLLLADAYAVMKNYAKAITSLKRALELKPD 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1297 iSTYALLAKAQ--MKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaeclynLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:TIGR02917 668 -NTEAQIGLAQllLAAKRTESAKKIAKSLQKQHPKAALGFEL----------EGDLYLRQKDYPAAIQAYRKALKRAPSS 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1375 AEAFY-HRGLCKVKlNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVR-----AYICR 1448
Cdd:TIGR02917 737 QNAIKlHRALLASG-NTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVvlnnlAWLYL 815
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741865 1449 G-----VLKYYNRTYKL-----------------------GITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMA 1495
Cdd:TIGR02917 816 ElkdprALEYAERALKLapnipaildtlgwllvekgeadrALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
898-1114 |
4.40e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 83.63 E-value: 4.40e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 898 IYRKLGKLQSAMNDLQEAI--FQ-----EPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEIF-RE 969
Cdd:COG2956 44 AHLALGNLYRRRGEYDRAIriHQkllerDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYeQE 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 970 KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTS 1048
Cdd:COG2956 124 GDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYdEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1049 LLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRALQDYS 1114
Cdd:COG2956 204 ALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLE 269
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1448-1646 |
6.33e-17 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 81.89 E-value: 6.33e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1448 RGVLKYYNRTYKLGITDLSTAIkMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALN------TLINRGL 1521
Cdd:COG4785 3 ALALALLLALALAAAAASKAAI-LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAlpdlaqLYYERGV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1522 IYTELKQYGFALEDFKQA-ALMSGTSVSLCQAtATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAm 1600
Cdd:COG4785 82 AYDSLGDYDLAIADFDQAlELDPDLAEAYNNR-GLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL- 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1601 iqAQKDFLKALHLDPSC----------------LKARISL----GYNLQAQGKFQKAWIHFTVGIE 1646
Cdd:COG4785 160 --AIADLEKALELDPNDperalwlylaerkldpEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
1153-1377 |
3.73e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 80.05 E-value: 3.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1153 VSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLY 1232
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1233 IMRGqfllmmksydlakftiyqvaemnkgiiemspiqeaLIYSFCENHDKAIHILEGVIASKP-DISTYALLAKAQMKAK 1311
Cdd:COG0457 80 NNLG-----------------------------------LALQALGRYEEALEDYDKALELDPdDAEALYNLGLALLELG 124
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1312 RIKESVRLFKKALELytfsdkgpvaTSVSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEA 1377
Cdd:COG0457 125 RYDEAIEAYERALEL----------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1700-1850 |
3.79e-16 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.27 E-value: 3.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1700 QQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCA 1779
Cdd:COG3914 59 LLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRA 138
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741865 1780 MERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDL 1850
Cdd:COG3914 139 LALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1195-1418 |
5.80e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 77.34 E-value: 5.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1195 LQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKF-TIYQVAEMNKGIIEMSPIQEALI 1273
Cdd:COG3914 8 ALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAaGEAAAAAAALLLLAALLELAALL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1274 YSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfSDkgpvatsvSAECLYNLGLCYM 1352
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDnAEALFNLGNLLLALGRLEEALAALRRALALN--PD--------FAEAYLNLGEALR 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741865 1353 EEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYY 1418
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRlEEAIAAYRRALELDPDNADAHSNLLFAL 224
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
870-1087 |
6.68e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 74.00 E-value: 6.68e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 870 YESEVEKLTQEIKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFI 949
Cdd:COG2956 58 YDRAIRIHQKLLERDPDR-AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 950 TKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALW 1027
Cdd:COG2956 137 LKLGPENAHAYCELAELyLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYeEAIAALERALEQDPDYLPALP 216
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYrGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG2956 217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1616-1752 |
8.33e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 8.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1616 SCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVI 1694
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDePEARLNLGLA 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741865 1695 HEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 1752
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1296-1441 |
8.49e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.22 E-value: 8.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1296 DISTYALLAKAQMKAKRIKESVRLFKKALELYTfsdkgpvaTSVSAecLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 1375
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDP--------DNPEA--FALLGEILLQLGDLDEAIVLLHEALELDPDEP 72
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741865 1376 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPES 1441
Cdd:COG4783 73 EARLNLGLALLKAGDyDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1366-1575 |
1.13e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.26 E-value: 1.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1366 KAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAY 1445
Cdd:COG4785 31 FAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAY 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1446 ICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENialntlinrgliYTE 1525
Cdd:COG4785 111 NNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDP------------ERA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1526 LKQYGFALEDFKQAALmsgtsVSLCQATATCHHRIKEFEGAVEFFTRAIK 1575
Cdd:COG4785 179 LWLYLAERKLDPEKAL-----ALLLEDWATAYLLQGDTEEARELFKLALA 223
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1564-1761 |
1.31e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 72.26 E-value: 1.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1564 EGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKAL---HLDPSCLKARISLGYNLQAQGKFQKAWIH 1640
Cdd:COG4785 16 AAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdraLALPDLAQLYYERGVAYDSLGDYDLAIAD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1641 FTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPS-- 1717
Cdd:COG4785 96 FDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDpDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdp 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1039741865 1718 --YSLAYFNAGNIYLHHRQFSQASDYFSTAL-KFNPENEYALMNRAV 1761
Cdd:COG4785 176 erALWLYLAERKLDPEKALALLLEDWATAYLlQGDTEEARELFKLAL 222
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
885-1027 |
1.58e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 72.35 E-value: 1.58e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 885 KRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKA 964
Cdd:COG0457 38 DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLG 117
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741865 965 EIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALW 1027
Cdd:COG0457 118 LALLElGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEeALELLEKLEAAALAALLAAA 182
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1093-1233 |
1.65e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.87 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1093 ALYYRACLFRKSSPYRALQDYSVSVLINDGY-------DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYIN 1165
Cdd:COG4785 33 AVLALAIALADLALALAAAALAAAALAAERIdralalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNN 112
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1166 IGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPD----AIHLYI 1233
Cdd:COG4785 113 RGLAYLL-LGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNdperALWLYL 183
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1341-1475 |
1.77e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.45 E-value: 1.77e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNS-ILDFNRALTLNPKHYQAYLSRVAYYG 1419
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEaIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1420 LKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 1475
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
975-1090 |
1.93e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 68.88 E-value: 1.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYdEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110
....*....|....*....|....*....|....*..
gi 1039741865 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1721-1851 |
1.99e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 69.07 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1721 AYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYL 1800
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1039741865 1801 KKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 1851
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
952-1172 |
2.48e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.10 E-value: 2.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 952 YNKNHAEAYLSKAEIFREKDITLAILNYSQAikcRPKDADLYFKRGEMYEKTNKVLA----IDDYSKCIYYNRKRSDALW 1027
Cdd:COG4785 1 LYALALALLLALALAAAAASKAAILLAALLF---AAVLALAIALADLALALAAAALAaaalAAERIDRALALPDLAQLYY 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1028 KRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNnwvalYYRAclfrksspy 1107
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPD-----YAYA--------- 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039741865 1108 ralqdysvsvlindgydnlncFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLE 1172
Cdd:COG4785 144 ---------------------YLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERK 187
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1375-1509 |
3.04e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.68 E-value: 3.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1375 AEAFYHRGLCKVKLNKQNSIL-DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKY 1453
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEaLLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1454 YNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 1509
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1296-1414 |
3.11e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.10 E-value: 3.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1296 DISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgPVatsvSAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFA 1375
Cdd:COG4785 72 LAQLYYERGVAYDSLGDYDLAIADFDQALELD------PD----LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYA 141
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1039741865 1376 EAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:COG4785 142 YAYLNRGIALYYLGRyELAIADLEKALELDPNDPERALWL 181
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1351-1509 |
5.37e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 74.26 E-value: 5.37e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1351 YMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 1429
Cdd:COG3914 88 LQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRlEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIA 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1430 NCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGE 1509
Cdd:COG3914 168 ALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1472-1795 |
7.00e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.87 E-value: 7.00e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1472 DKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSvslcq 1551
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALL----- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1552 atatcHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNsymEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQ 1631
Cdd:COG3914 88 -----LQALGRYEEALALYRRALALNPDNAEALFNLGN---LLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1632 GKFQKawihftvgiesnpksylayegravvclqmsnyfaamqdincaikinstaefltnrgvihefmgqqqsAMADYQAA 1711
Cdd:COG3914 160 GRLEE-------------------------------------------------------------------AIAALRRA 172
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1712 ISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMN------RAVTNSVLKKYEEAEKDFSCAMERCPH 1785
Cdd:COG3914 173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNllfalrQACDWEVYDRFEELLAALARGPSELSP 252
|
330
....*....|
gi 1039741865 1786 WAALYFNRAS 1795
Cdd:COG3914 253 FALLYLPDDD 262
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1350-1443 |
1.96e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 64.81 E-value: 1.96e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1350 CYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIL 1429
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....
gi 1039741865 1430 NCNEAIKLYPESVR 1443
Cdd:COG3063 81 YLERALELDPSALR 94
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1268-1407 |
1.97e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.37 E-value: 1.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1268 IQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAECLYN 1346
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDnPEAFALLGEILLQLGDLDEAIVLLHEALELD----------PDEPEARLN 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1347 LGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKH 1407
Cdd:COG4783 78 LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRpDEAIAALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1176-1641 |
2.83e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 71.55 E-value: 2.83e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1176 NYTEAFWWFTEAI--KVDPLYlqsYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIy 1253
Cdd:TIGR00990 142 DFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL- 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1254 QVAEMNKGI--IEMSPIQEALIYSFCENhdKAIHILEGVIASKPD---ISTYALLAKAQMKAKRIKESVRLFKKALelyt 1328
Cdd:TIGR00990 218 TASCIIDGFrnEQSAQAVERLLKKFAES--KAKEILETKPENLPSvtfVGNYLQSFRPKPRPAGLEDSNELDEETG---- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1329 fsdKGpvatsvsaecLYNLGLCYMEegnfQMAFESFTKAVKAnpeFAEAfyhrglckvklnkqnsiLDFNRaltLNPKHY 1408
Cdd:TIGR00990 292 ---NG----------QLQLGLKSPE----SKADESYEEAARA---FEKA-----------------LDLGK---LGEKEA 331
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1409 QAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVL--------KYYNrtyklgitDLSTAIKMDKNNYTAYY 1480
Cdd:TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMnlelgdpdKAEE--------DFDKALKLNSEDPDIYY 403
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1481 NRALCYTKIGEHQMALRDYGIVLLLDAG---ENIALNTLINR-GLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATC 1556
Cdd:TIGR00990 404 HRAQLHFIKGEFAQAGKDYQKSIDLDPDfifSHIQLGVTQYKeGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1557 HHRIKEFEGAVEFFTraiKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQK 1636
Cdd:TIGR00990 484 DEAIEKFDTAIELEK---ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDE 560
|
....*
gi 1039741865 1637 AWIHF 1641
Cdd:TIGR00990 561 ALKLF 565
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1340-1446 |
3.02e-12 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.41 E-value: 3.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1340 SAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQN-SILDFNRALTLNPKHYQAYLSRVAYY 1418
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEeAEELLERALALDPDNPEALYLLGLAA 95
|
90 100
....*....|....*....|....*...
gi 1039741865 1419 GLKGRYSKAILNCNEAIKLYPESVRAYI 1446
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1527-1851 |
6.89e-12 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 70.40 E-value: 6.89e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1527 KQYGFALEDFKQAALMSGTSVSLCQATAtCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQ-EDAMI---- 1601
Cdd:TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAA-CHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKyADALLdlta 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1602 ----------------------QAQKDFLKALHLDPSCLKARISLGYNLQA-QGKFQKAWIHFTVGI-ESNPKSYLAYEG 1657
Cdd:TIGR00990 220 sciidgfrneqsaqaverllkkFAESKAKEILETKPENLPSVTFVGNYLQSfRPKPRPAGLEDSNELdEETGNGQLQLGL 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1658 RAVVCLQMSNYFAAMQDINCAIKINSTAEFLT----NRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHR 1733
Cdd:TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAialnLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1734 QFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIG 1813
Cdd:TIGR00990 380 DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459
|
330 340 350
....*....|....*....|....*....|....*...
gi 1039741865 1814 LSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 1851
Cdd:TIGR00990 460 KKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1694-1784 |
8.72e-12 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 62.88 E-value: 8.72e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1694 IHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDyFSTALKFNPENEYALMNRAVTNSVLKKYEEAE 1773
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1039741865 1774 KDFSCAMERCP 1784
Cdd:COG3063 80 AYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1704-1830 |
1.69e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.49 E-value: 1.69e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1704 AMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERC 1783
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039741865 1784 PHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQV 1830
Cdd:COG4235 82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1704-1850 |
1.83e-11 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 65.71 E-value: 1.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1704 AMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALkFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERC 1783
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAL-ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039741865 1784 PHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDL 1850
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALEL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1557-1651 |
2.13e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 63.10 E-value: 2.13e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1557 HHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQK 1636
Cdd:COG4235 27 YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTE---EAEELLERALALDPDNPEALYLLGLAAFQQGDYAE 103
|
90
....*....|....*
gi 1039741865 1637 AWIHFTVGIESNPKS 1651
Cdd:COG4235 104 AIAAWQKLLALLPAD 118
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1652-1784 |
2.38e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.83 E-value: 2.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1652 YLAYEGRAVVCLQMSNYFAAMQDINCAIKINSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLH 1731
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039741865 1732 HRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCP 1784
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1453-1852 |
2.88e-11 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 68.47 E-value: 2.88e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1453 YYNRTYKLGITDLSTAIKMdKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFA 1532
Cdd:TIGR00990 138 YRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN---RRANAYDGLGKYADA 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1533 LEDFKQAALMSG-TSVSLCQATATCHHRIKEFEGAVEFFTRAIKI-NPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKA 1610
Cdd:TIGR00990 214 LLDLTASCIIDGfRNEQSAQAVERLLKKFAESKAKEILETKPENLpSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNG 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1611 -LHLDPSCLKARISLGYNlQAQGKFQKAwihFTVGiESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFL 1688
Cdd:TIGR00990 294 qLQLGLKSPESKADESYE-EAARAFEKA---LDLG-KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDpRVTQSY 368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1689 TNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKK 1768
Cdd:TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1769 YEEAEKDFSCAMERCP-------HWAALYFNRASFYVYLKKYklaeeDLGIGLSLKPDEaiMYNLRAQVRGKMGLIAEAM 1841
Cdd:TIGR00990 449 IASSMATFRRCKKNFPeapdvynYYGELLLDQNKFDEAIEKF-----DTAIELEKETKP--MYMNVLPLINKALALFQWK 521
|
410
....*....|.
gi 1039741865 1842 SDYNQALDLEE 1852
Cdd:TIGR00990 522 QDFIEAENLCE 532
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1389-1517 |
3.39e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 3.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1389 NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTA 1468
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1039741865 1469 IKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLI 1517
Cdd:COG3914 173 LELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1581-1718 |
4.25e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 4.25e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1581 VDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAV 1660
Cdd:COG4783 4 AEALYALAQALLLAGDYD---EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741865 1661 VCLQMSNYFAAMQDINCAIKINST-AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 1718
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEhPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
957-1090 |
4.42e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 4.42e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 957 AEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYF 1034
Cdd:COG4783 4 AEALYALAQAlLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLdEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1035 ENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1512-1651 |
7.66e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 61.75 E-value: 7.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1512 ALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSY 1591
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1592 MEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 1651
Cdd:COG4783 83 LKAGDYD---EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1556-1652 |
1.53e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 59.41 E-value: 1.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1556 CHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDAMIQaqkdFLKALHLDPSCLKARISLGYNLQAQGKFQ 1635
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA----LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....*..
gi 1039741865 1636 KAWIHFTVGIESNPKSY 1652
Cdd:COG3063 77 EALAYLERALELDPSAL 93
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
989-1103 |
1.72e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 60.59 E-value: 1.72e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 989 DADLYFKRGEMYEKTNKV-LAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG4783 3 CAEALYALAQALLLAGDYdEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110
....*....|....*....|....*....|....*.
gi 1039741865 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
1561-1856 |
1.78e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 66.26 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1561 KEFEGAVEFFTRAIKINPHYVDAYIGRG--NSYMEYSqEDAMIQAQKDFLKALHLdpsclkarisLGYNLQAQGKFQKAW 1638
Cdd:TIGR02917 77 KELRKALSLGYPKNQVLPLLARAYLLQGkfQQVLDEL-PGKTLLDDEGAAELLAL----------RGLAYLGLGQLELAQ 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1639 IHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPS 1717
Cdd:TIGR02917 146 KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADpGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPN 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1718 YSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCP-HWAALYFNRASF 1796
Cdd:TIGR02917 226 NIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeYLPALLLAGASE 305
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1797 YvYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLEECSTA 1856
Cdd:TIGR02917 306 Y-QLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1645-1753 |
3.36e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.63 E-value: 3.36e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1645 IESNPKSYLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYF 1723
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89
|
90 100 110
....*....|....*....|....*....|
gi 1039741865 1724 NAGNIYLHHRQFSQASDYFSTALKFNPENE 1753
Cdd:COG4235 90 LLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1282-1412 |
4.81e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 4.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1282 KAIHILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLFKKALELytfsDKGpvatsvSAECLYNLGLCYMEEGNFQMA 1360
Cdd:COG4235 1 EAIARLRQALAANPnDAEGWLLLGRAYLRLGRYDEALAAYEKALRL----DPD------NADALLDLAEALLAAGDTEEA 70
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039741865 1361 FESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYL 1412
Cdd:COG4235 71 EELLERALALDPDNPEALYLLGLAAFQQGDyAEAIAAWQKLLALLPADAPARL 123
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1448-1580 |
7.12e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 7.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1448 RGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNTLinrGLIYTELK 1527
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL---GLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039741865 1528 QYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHY 1580
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1706-1818 |
8.01e-10 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 59.20 E-value: 8.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1706 ADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPH 1785
Cdd:COG5010 41 ELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD 120
|
90 100 110
....*....|....*....|....*....|...
gi 1039741865 1786 WAALYFNRASFYVYLKKYKLAEEDLGIGLSLKP 1818
Cdd:COG5010 121 NPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1394-1513 |
8.93e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.48 E-value: 8.93e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1394 ILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDK 1473
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDP 82
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1039741865 1474 NNYTAYYNRALCYTKIGEHQMALRDYGIVL-LLDAGENIAL 1513
Cdd:COG4235 83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLaLLPADAPARL 123
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1059-1320 |
1.07e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNW-VALYYRACLFRKSSPYRALQDYSVSVLINDGYDNLNCFLHRGILYT 1137
Cdd:COG3914 3 AAALLALAALAAAALLAAAAAAELALAAELEAAaLAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1138 QLKFWMLAICDFETVVSLERNA-------TLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHK 1210
Cdd:COG3914 83 LAALLLQALGRYEEALALYRRAlalnpdnAEALFNLGNLLLA-LGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1211 LKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEMSPIQEALIYSFC--ENHDKAIHILE 1288
Cdd:COG3914 162 LEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACdwEVYDRFEELLA 241
|
250 260 270
....*....|....*....|....*....|..
gi 1039741865 1289 GVIASKPDISTYALLAKAQMKAKRIKESVRLF 1320
Cdd:COG3914 242 ALARGPSELSPFALLYLPDDDPAELLALARAW 273
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1685-1776 |
1.22e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.09 E-value: 1.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 1764
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90
....*....|..
gi 1039741865 1765 VLKKYEEAEKDF 1776
Cdd:COG4235 97 QQGDYAEAIAAW 108
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
889-1016 |
1.41e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 889 AFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI-F 967
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAlL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 1039741865 968 REKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPdEAIAALEKAL 133
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
892-1326 |
1.82e-09 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 62.69 E-value: 1.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 892 YCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLN---FITKYNKNHAEAYL------- 961
Cdd:TIGR00990 163 YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTascIIDGFRNEQSAQAVerllkkf 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 962 --SKA-EIFREKDITL----AILNYSQAIKCRPKDADlYFKRGEMYEKTNKVLAiddySKCIYYNRKRSDALWKRGMFYF 1034
Cdd:TIGR00990 243 aeSKAkEILETKPENLpsvtFVGNYLQSFRPKPRPAG-LEDSNELDEETGNGQL----QLGLKSPESKADESYEEAARAF 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1035 ENGnwigavydfTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACL-FRKSSPYRALQDY 1113
Cdd:TIGR00990 318 EKA---------LDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMnLELGDPDKAEEDF 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1114 SVSVLINDgyDNLNCFLHRGilytQLKFWmlaicdfetvvslernatlayinigiiylehLDNYTEAFWWFTEAIKVDPL 1193
Cdd:TIGR00990 389 DKALKLNS--EDPDIYYHRA----QLHFI-------------------------------KGEFAQAGKDYQKSIDLDPD 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1194 YLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLL-------MMKSYDLAKFTIYQVAEMNKGIIEMs 1266
Cdd:TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLdqnkfdeAIEKFDTAIELEKETKPMYMNVLPL- 510
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039741865 1267 pIQEAL-IYSFCENHDKAIHILEGVIASKPDiSTYALLAKAQMKAK--RIKESVRLFKKALEL 1326
Cdd:TIGR00990 511 -INKALaLFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQqgDVDEALKLFERAAEL 571
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1494-1649 |
1.96e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.43 E-value: 1.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1494 MALRDYGIVLLLDAGENIALNTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRA 1573
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1574 IKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNP 1649
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKD---EAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
879-1016 |
2.11e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 62.32 E-value: 2.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 879 QEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAE 958
Cdd:COG3914 68 AAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 959 AYLSKAEIFRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCI 1016
Cdd:COG3914 148 AYLNLGEALRRlGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLeEAIAAYRRAL 207
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1728-1819 |
2.64e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.95 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1728 IYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKdFSCAMERCPHWAALYFNRASFYVYLKKYKLAE 1807
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1039741865 1808 EDLGIGLSLKPD 1819
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
905-1113 |
2.74e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 61.93 E-value: 2.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 905 LQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI----------FREKDITL 974
Cdd:COG3914 17 LLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAallelaalllQALGRYEE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 975 AILNYSQAIKCRPKDADLYFKRGEMYEKTNKVL-AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLD 1053
Cdd:COG3914 97 ALALYRRALALNPDNAEALFNLGNLLLALGRLEeALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1054 PYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPN------NWVALYYRACLFRKSSPYRALQDY 1113
Cdd:COG3914 177 PDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDnadahsNLLFALRQACDWEVYDRFEELLAA 242
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1008-1113 |
4.62e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.55 E-value: 4.62e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1008 AIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLD 1087
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
90 100
....*....|....*....|....*..
gi 1039741865 1088 PNNWVALYYRA-CLFRKSSPYRALQDY 1113
Cdd:COG4235 82 PDNPEALYLLGlAAFQQGDYAEAIAAW 108
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
941-1065 |
1.06e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 941 DALDDLNFITKYNKNHAEAYLSKAEI-FREKDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKV-LAIDDYSKCIYY 1018
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAyLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTeEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039741865 1019 NRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGR 1065
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1059-1227 |
1.07e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALL-----------------------------------GEILLQ 50
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIEL 1218
Cdd:COG4783 51 LGDLDEAIVLLHEALELDPDEPEARLNLGLALLK-AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
|
....*....
gi 1039741865 1219 TRAIHLQPD 1227
Cdd:COG4783 130 EKALELDPD 138
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
1162-1327 |
1.08e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.58 E-value: 1.08e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4783 6 ALYALAQALLL-AGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1242 MKSYdlakftiyqvaemnkgiiemspiqealiysfcenhDKAIHILEGVIASKP-DISTYALLAKAQMKAKRIKESVRLF 1320
Cdd:COG4783 85 AGDY-----------------------------------DEALALLEKALKLDPeHPEAYLRLARAYRALGRPDEAIAAL 129
|
....*..
gi 1039741865 1321 KKALELY 1327
Cdd:COG4783 130 EKALELD 136
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1398-1506 |
1.12e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 56.12 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1398 NRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYT 1477
Cdd:COG5010 44 AAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123
|
90 100
....*....|....*....|....*....
gi 1039741865 1478 AYYNRALCYTKIGEHQMALRDYGIVLLLD 1506
Cdd:COG5010 124 AYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
992-1091 |
1.30e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.02 E-value: 1.30e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 992 LYFKRGEmYEKtnkvlAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVyDFTSLLKLDPYNSKARTYRGRAYFKRN 1071
Cdd:COG3063 1 LYLKLGD-LEE-----AEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG 73
|
90 100
....*....|....*....|
gi 1039741865 1072 LYKQATQDFSAAIHLDPNNW 1091
Cdd:COG3063 74 DYDEALAYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1766-1851 |
1.55e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 1.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1766 LKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYN 1845
Cdd:COG5010 67 LGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
....*.
gi 1039741865 1846 QALDLE 1851
Cdd:COG5010 147 RALGTS 152
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1349-1439 |
1.73e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 1.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1349 LCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKA 1427
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSgDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141
|
90
....*....|..
gi 1039741865 1428 ILNCNEAIKLYP 1439
Cdd:COG5010 142 KAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1661-1751 |
2.51e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.25 E-value: 2.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1661 VCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMAdYQAAISLNPSYSLAYFNAGNIYLHHRQFSQAS 1739
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1039741865 1740 DYFSTALKFNPE 1751
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1300-1405 |
3.86e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.58 E-value: 3.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1300 YALLAKAQMKAKRIKESVRLFKKALELYTFSdkgpvatsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFY 1379
Cdd:COG5010 57 ESPSDNLYNKLGDFEESLALLEQALQLDPNN----------PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS 126
|
90 100
....*....|....*....|....*..
gi 1039741865 1380 HRGLCKVKLNKQNSILD-FNRALTLNP 1405
Cdd:COG5010 127 NLAALLLSLGQDDEAKAaLQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
873-989 |
4.42e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 873 EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKY 952
Cdd:COG4783 22 EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKL 101
|
90 100 110
....*....|....*....|....*....|....*...
gi 1039741865 953 NKNHAEAYLSKAEIFRE-KDITLAILNYSQAIKCRPKD 989
Cdd:COG4783 102 DPEHPEAYLRLARAYRAlGRPDEAIAALEKALELDPDD 139
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
988-1109 |
5.15e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 54.20 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 988 KDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAY 1067
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1039741865 1068 FKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRKSSPYRA 1109
Cdd:COG5010 99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
887-1035 |
1.09e-07 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 56.93 E-value: 1.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 887 NLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAYLSKAEI 966
Cdd:COG3914 110 DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 967 FRE-KDITLAILNYSQAIKCRPKDADLYFKRGEMYEKTNKVLAIDDYSKCIYYNRKRSDALWKRGMFYFE 1035
Cdd:COG3914 190 LQDlGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1744-1850 |
1.17e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 52.32 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1744 TALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGLSLKPDEAIM 1823
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
|
90 100
....*....|....*....|....*..
gi 1039741865 1824 YNLRAQVRGKMGLIAEAMSDYNQALDL 1850
Cdd:COG4235 88 LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1766-1851 |
1.39e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.94 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1766 LKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEdLGIGLSLKPDEAIMYNLRAQVRGKMGLIAEAMSDYN 1845
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83
|
....*.
gi 1039741865 1846 QALDLE 1851
Cdd:COG3063 84 RALELD 89
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1592-1760 |
1.54e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 54.27 E-value: 1.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1592 MEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAyegravvclqMSNYFAa 1671
Cdd:TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV----------LNNYGT- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1672 mqdincaikinstaeFLTNRgvihefmGQQQSAMADYQAAISLN--PSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFN 1749
Cdd:TIGR02521 108 ---------------FLCQQ-------GKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165
|
170
....*....|.
gi 1039741865 1750 PENEYALMNRA 1760
Cdd:TIGR02521 166 PQRPESLLELA 176
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
992-1088 |
2.75e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.88 E-value: 2.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 992 LYFKRGEMYEktnkvlAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRN 1071
Cdd:COG5010 63 LYNKLGDFEE------SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
90
....*....|....*..
gi 1039741865 1072 LYKQATQDFSAAIHLDP 1088
Cdd:COG5010 137 QDDEAKAALQRALGTSP 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
881-1356 |
3.06e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.47 E-value: 3.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 881 IKSEKRNlAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDDLNFITKYNKNHAEAY 960
Cdd:TIGR02917 458 EKKQPDN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAI 536
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 961 LSKAEIFREKDITLAILN-YSQAIKCRPKDADLYFKRGEMYEKTN---KVLAI-DDYSKciyyNRKRSDALWK-RGMFYF 1034
Cdd:TIGR02917 537 LALAGLYLRTGNEEEAVAwLEKAAELNPQEIEPALALAQYYLGKGqlkKALAIlNEAAD----AAPDSPEAWLmLGRAQL 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1035 ENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALyyraclfrksspyralqdys 1114
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQ-------------------- 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1115 vsvlindgydnlncflhrgILYTQLkfwMLAICDFETVVSLERNATLAYIN-------IGIIYLEHlDNYTEAFWWFTEA 1187
Cdd:TIGR02917 673 -------------------IGLAQL---LLAAKRTESAKKIAKSLQKQHPKaalgfelEGDLYLRQ-KDYPAAIQAYRKA 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1188 IKVDPLYlQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKfTIYQVaemnkgIIEMSP 1267
Cdd:TIGR02917 730 LKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI-KHYQT------VVKKAP 801
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1268 IQEA----LIYSFCENHD-KAIHILEGVIASKPDISTYA-LLAKAQMKAKRIKESVRLFKKALELytfsdkGPVATSVSa 1341
Cdd:TIGR02917 802 DNAVvlnnLAWLYLELKDpRALEYAERALKLAPNIPAILdTLGWLLVEKGEADRALPLLRKAVNI------APEAAAIR- 874
|
490
....*....|....*
gi 1039741865 1342 eclYNLGLCYMEEGN 1356
Cdd:TIGR02917 875 ---YHLALALLATGR 886
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1279-1377 |
6.87e-07 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 49.60 E-value: 6.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1279 NHDKAIHILEGVIASKPDiSTYA-----LLAKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYME 1353
Cdd:COG1729 8 DYDEAIAAFKAFLKRYPN-SPLApdalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDA-------LLKLGLSYLE 79
|
90 100
....*....|....*....|....
gi 1039741865 1354 EGNFQMAFESFTKAVKANPEFAEA 1377
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAA 103
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1417-1507 |
7.18e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.01 E-value: 7.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1417 YYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGItDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMAL 1496
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|.
gi 1039741865 1497 RDYGIVLLLDA 1507
Cdd:COG3063 80 AYLERALELDP 90
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1719-1850 |
7.96e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.81 E-value: 7.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1719 SLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYV 1798
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1799 YLKKYKLAEEDLGIGLSLKPDeaimynlRAQVRGKMGLIAEAMSDYNQALDL 1850
Cdd:COG2956 88 KAGLLDRAEELLEKLLELDPD-------DAEALRLLAEIYEQEGDWEKAIEV 132
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
791-1110 |
8.51e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 54.32 E-value: 8.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 791 SVPTILNFDKFAESRGGIPKNTDPWTWVLELFAKDKPRQTHTAVASSAQEDVPEPVIELSKLELSDHVKCNLPPEVIKYY 870
Cdd:TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 871 ES-----EVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALDD 945
Cdd:TIGR02917 578 LGkgqlkKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 946 LNFITKYNKNHAEAYLSKAEIFREKDITLAILNYSQAI-KCRPKDADLYFKRGEMY-EKTNKVLAIDDYSKcIYYNRKRS 1023
Cdd:TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLqKQHPKAALGFELEGDLYlRQKDYPAAIQAYRK-ALKRAPSS 736
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1024 DALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLFRK 1103
Cdd:TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE 816
|
....*..
gi 1039741865 1104 SSPYRAL 1110
Cdd:TIGR02917 817 LKDPRAL 823
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1572-1716 |
1.34e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.96 E-value: 1.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1572 RAIKINPHYVDAYIGRGNSYMEYSQEDAMIQAQKDFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKS 1651
Cdd:COG5010 8 DRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNN 87
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1652 YLAYEGRAVVCLQMSNYFAAMQDINCAIKIN-STAEFLTNRGVIHEFMGQQQSAMADYQAAISLNP 1716
Cdd:COG5010 88 PELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1305-1414 |
1.90e-06 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 48.45 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1305 KAQMKAKRIKESVRLFKKALELYtfsDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE---FAEAFYHR 1381
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRY---PNSPLA----PDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKL 73
|
90 100 110
....*....|....*....|....*....|....
gi 1039741865 1382 GLCKVKL-NKQNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:COG1729 74 GLSYLELgDYDKARATLEELIKKYPDSEAAKEAR 107
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1399-1539 |
2.27e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 49.57 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1399 RALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTA 1478
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039741865 1479 YYNRALCYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEDFKQA 1539
Cdd:COG5010 91 YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS---NLAALLLSLGQDDEAKAALQRA 148
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
1446-1642 |
2.90e-06 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 50.07 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1446 ICRGVLKYYNRTYKLGitdlstaikmDKNNYTAYYNRALCYTKIGEHQMALRdygivlLLDA---GENIALNTLINRGLI 1522
Cdd:NF040959 17 ILNNMVNGYNRLFSLS----------DRDRAKMYRNKGISHAKKGRYDKAVR------YLEQvarIDPDDVEALYRLGVA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1523 YTELKQYGFALEDFKqaalmsgTSVSLCQATATCHHR-------IKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYS 1595
Cdd:NF040959 81 YLKTGQYDRAIKVLE-------KVLSLAPDHVKAAYRkgvallkIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLG 153
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1039741865 1596 QEDAMIQAqkdFLKALHLDPSCLKARISLGYNLQAQGKFQKAWIHFT 1642
Cdd:NF040959 154 QYDKAIEA---FQKALELDPNEIKYHQAIGFMYVQKGDHETAAEHFK 197
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1522-1619 |
3.26e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1522 IYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFfTRAIKINPHYVDAYIGRGNSYMEYSQEDami 1601
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90
....*....|....*...
gi 1039741865 1602 QAQKDFLKALHLDPSCLK 1619
Cdd:COG3063 77 EALAYLERALELDPSALR 94
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1300-1781 |
4.19e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.91 E-value: 4.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1300 YAL-LAKAQMKAKRIKEsvrlFKKALELYTFS---DKGPVATSvsaeclyNLGLCYMEEGNFQMAFESFTKAVKANPEFA 1375
Cdd:TIGR00990 126 YAAkLKEKGNKAYRNKD----FNKAIKLYSKAiecKPDPVYYS-------NRAACHNALGDWEKVVEDTTAALELDPDYS 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1376 EAFYHRGLCKVKLNK-QNSILDFNrALTLNPKHYQAYLSRVAYYGLKgrySKAILNCNEAIKLYPESVRAYICRGVLKYY 1454
Cdd:TIGR00990 195 KALNRRANAYDGLGKyADALLDLT-ASCIIDGFRNEQSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVGNYLQS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1455 NRTyKLGITDLSTAIKMDK---NNYTAYYNRALcYTKIGE-HQMALRDYGIVLLL-DAGENIALnTLINRGLIYTELKQY 1529
Cdd:TIGR00990 271 FRP-KPRPAGLEDSNELDEetgNGQLQLGLKSP-ESKADEsYEEAARAFEKALDLgKLGEKEAI-ALNLRGTFKCLKGKH 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1530 GFALEDFKQA-ALMSGTSVSLCQaTATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFL 1608
Cdd:TIGR00990 348 LEALADLSKSiELDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA---QAGKDYQ 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1609 KALHLDPSCLKARISLGYNLQAQGKFQKAWIHFTVGIESNPKSYLAYegravvclqmsNYFAamqdincaikinstaEFL 1688
Cdd:TIGR00990 424 KSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY-----------NYYG---------------ELL 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1689 TNRgviHEFmgqqQSAMADYQAAISLNPSYSLAYFN-------AGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAV 1761
Cdd:TIGR00990 478 LDQ---NKF----DEAIEKFDTAIELEKETKPMYMNvlplinkALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQ 550
|
490 500
....*....|....*....|
gi 1039741865 1762 TNSVLKKYEEAEKDFSCAME 1781
Cdd:TIGR00990 551 LLLQQGDVDEALKLFERAAE 570
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1396-1476 |
5.05e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 5.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1396 DFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAIlNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNN 1475
Cdd:COG3063 14 YYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSA 92
|
.
gi 1039741865 1476 Y 1476
Cdd:COG3063 93 L 93
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
1685-1776 |
5.30e-06 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 50.27 E-value: 5.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYALMNRAVTNS 1764
Cdd:PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143
|
90
....*....|..
gi 1039741865 1765 VLKKYEEAEKDF 1776
Cdd:PRK11189 144 YGGRYELAQDDL 155
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1341-1374 |
5.63e-06 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 44.74 E-value: 5.63e-06
10 20 30
....*....|....*....|....*....|....
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1516-1615 |
5.64e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 47.69 E-value: 5.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1516 LINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPHYVDAYIGRGNSYMeys 1595
Cdd:COG4235 20 WLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF--- 96
|
90 100
....*....|....*....|
gi 1039741865 1596 QEDAMIQAQKDFLKALHLDP 1615
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLP 116
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1628-1717 |
7.25e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.32 E-value: 7.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1628 LQAQGKFQKAWIHFTVGIESNPKSYLAYEGRAVVCLQMSNYFAAMQdINCAIKINST-AEFLTNRGVIHEFMGQQQSAMA 1706
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNnAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1039741865 1707 DYQAAISLNPS 1717
Cdd:COG3063 81 YLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1162-1248 |
8.86e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.92 E-value: 8.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4235 19 GWLLLGRAYLR-LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
....*..
gi 1039741865 1242 MKSYDLA 1248
Cdd:COG4235 98 QGDYAEA 104
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1264-1372 |
9.86e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 47.65 E-value: 9.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1264 EMSPIQEALIYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRLFKKALELYtfsdkgpvatSVSAE 1342
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPNnPELYYNLALLYSRSGDKDEAKEYYEKALALS----------PDNPN 123
|
90 100 110
....*....|....*....|....*....|
gi 1039741865 1343 CLYNLGLCYMEEGNFQMAFESFTKAVKANP 1372
Cdd:COG5010 124 AYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1699-1784 |
1.14e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 46.14 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1699 GQQQSAMADYQAAISLNPSYSL---AYFNAGNIYLHHRQFSQASDYFSTALKFNPENEY---ALMNRAVTNSVLKKYEEA 1772
Cdd:COG1729 7 GDYDEAIAAFKAFLKRYPNSPLapdALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKA 86
|
90
....*....|..
gi 1039741865 1773 EKDFSCAMERCP 1784
Cdd:COG1729 87 RATLEELIKKYP 98
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1341-1374 |
1.75e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 43.18 E-value: 1.75e-05
10 20 30
....*....|....*....|....*....|....
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPEF 1374
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1273-1373 |
4.86e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.01 E-value: 4.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1273 IYSFCENHDKAIHILEGVIASKPD-ISTYALLAKAQMKAKRIKESVRlFKKALELYtfsdkgpvatSVSAECLYNLGLCY 1351
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDnADALNNLGLLLLEQGRYDEAIA-LEKALKLD----------PNNAEALLNLAELL 69
|
90 100
....*....|....*....|..
gi 1039741865 1352 MEEGNFQMAFESFTKAVKANPE 1373
Cdd:COG3063 70 LELGDYDEALAYLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1462-1585 |
7.10e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 44.23 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1462 ITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLLDaGENIALntLINRGLIYTELKQYGFALEDFKQA-A 1540
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD-PDNADA--LLDLAEALLAAGDTEEAEELLERAlA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1039741865 1541 LMSGTSVSLCQAtATCHHRIKEFEGAVEFFTRAIKINPHYVDAYI 1585
Cdd:COG4235 80 LDPDNPEALYLL-GLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1162-1325 |
7.31e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 46.06 E-value: 7.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1162 AYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLM 1241
Cdd:COG4785 75 LYYERGVAYDS-LGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1242 MKSYDLAkftiyqVAEMNKGIIEMSPIQEALIYSFCENHDKAihilegviASKPDISTYALLAKAQMKAKRIKESVRLFK 1321
Cdd:COG4785 154 LGRYELA------IADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLLQGDTEEARELFK 219
|
....
gi 1039741865 1322 KALE 1325
Cdd:COG4785 220 LALA 223
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1346-1491 |
1.03e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 45.79 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1346 NLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLnKQNSILD--FNRALTLNPKHYQAYLSRVAYYGLKGR 1423
Cdd:TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQL-GELEKAEdsFRRALTLNPNNGDVLNNYGTFLCQQGK 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1424 YSKAILNCNEAIK--LYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGE 1491
Cdd:TIGR02521 115 YEQAMQQFEQAIEdpLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
1562-1616 |
1.40e-04 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.08 E-value: 1.40e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1039741865 1562 EFEGAVEFFTRAIKINPHYVDAYIGRGNSYMEYSQEDamiQAQKDFLKALHLDPS 1616
Cdd:cd24142 15 NFELALKFLQRALELEPNNVEALELLGEILLELGDVE---EAREVLLRAIELDPD 66
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1171-1260 |
1.44e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1171 LEHLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKF 1250
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143
|
90
....*....|
gi 1039741865 1251 TIYQVAEMNK 1260
Cdd:COG5010 144 ALQRALGTSP 153
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
1341-1373 |
1.47e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.58 E-value: 1.47e-04
10 20 30
....*....|....*....|....*....|...
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1135-1228 |
1.52e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.46 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1135 LYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWwFTEAIKVDPLYLQSYICRAETYSKLHKLKRA 1214
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLE-QGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|....
gi 1039741865 1215 VIELTRAIHLQPDA 1228
Cdd:COG3063 79 LAYLERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1393-1473 |
1.66e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1393 SILDFNRALTLNPKHYQAYLSRVAYYGLKGRYSKAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMD 1472
Cdd:COG5010 73 SLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
.
gi 1039741865 1473 K 1473
Cdd:COG5010 153 P 153
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1186-1306 |
2.04e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1186 EAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKFTIYQVAEMNKGIIEm 1265
Cdd:COG4235 8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPE- 86
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1039741865 1266 SPIQEALIYSFCENHDKAIHILEGVIASKPDISTYALLAKA 1306
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1735-1847 |
2.07e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 45.55 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1735 FSQASDYFSTALKFNPENEYALMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFYVYLKKYKLAEEDLGIGL 1814
Cdd:PLN03088 18 FALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGA 97
|
90 100 110
....*....|....*....|....*....|...
gi 1039741865 1815 SLKPDEAIMYNLRAQVRGKmglIAEAMSDYNQA 1847
Cdd:PLN03088 98 SLAPGDSRFTKLIKECDEK---IAEEEKDLVQP 127
|
|
| PRK11189 |
PRK11189 |
lipoprotein NlpI; Provisional |
990-1110 |
2.27e-04 |
|
lipoprotein NlpI; Provisional
Pssm-ID: 236875 [Multi-domain] Cd Length: 296 Bit Score: 45.27 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 990 ADLYFKRGEMYEKTN-KVLAIDDYSKCIYYNRKRSDALWKRGMFYFENGNWIGAVYDFTSLLKLDPYNSKARTYRGRAYF 1068
Cdd:PRK11189 64 AQLHYERGVLYDSLGlRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1039741865 1069 KRNLYKQATQDFSAAIHLDPNNwvalyyraclfrkssPYRAL 1110
Cdd:PRK11189 144 YGGRYELAQDDLLAFYQDDPND---------------PYRAL 170
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1426-1539 |
2.95e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.69 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1426 KAILNCNEAIKLYPESVRAYICRGVLKYYNRTYKLGITDLSTAIKMDKNNYTAYYNRALCYTKIGEHQMALRDYGIVLLL 1505
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....
gi 1039741865 1506 DAGENIALNTLinrGLIYTELKQYGFALEDFKQA 1539
Cdd:COG4235 81 DPDNPEALYLL---GLAAFQQGDYAEAIAAWQKL 111
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
1667-1752 |
3.12e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 43.51 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1667 NYFAAMQDINCAIKI----NSTAEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSYSLAYFNAGNIYlHHR--------- 1733
Cdd:PRK02603 50 EYAEALENYEEALKLeedpNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY-HKRgekaeeagd 128
|
90 100
....*....|....*....|....*
gi 1039741865 1734 ------QFSQASDYFSTALKFNPEN 1752
Cdd:PRK02603 129 qdeaeaLFDKAAEYWKQAIRLAPNN 153
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
967-1066 |
4.43e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 41.52 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 967 FREKDITLAILNYSQAIKCRPKD---ADLYFKRGEMYEKTNK-VLAIDDYSKCIYY---NRKRSDALWKRGMFYFENGNW 1039
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDyDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDY 83
|
90 100
....*....|....*....|....*..
gi 1039741865 1040 IGAVYDFTSLLKLDPYNSKARTYRGRA 1066
Cdd:COG1729 84 DKARATLEELIKKYPDSEAAKEARARL 110
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1132-1226 |
4.95e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 42.64 E-value: 4.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1132 RGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKL 1211
Cdd:COG5010 60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR-SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138
|
90
....*....|....*
gi 1039741865 1212 KRAVIELTRAIHLQP 1226
Cdd:COG5010 139 DEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
898-988 |
5.86e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 40.92 E-value: 5.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 898 IYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVNDALdDLNFITKYNKNHAEAYLSKAEI-FREKDITLAI 976
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELlLELGDYDEAL 79
|
90
....*....|..
gi 1039741865 977 LNYSQAIKCRPK 988
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
1311-1392 |
5.98e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 43.48 E-value: 5.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1311 KRIKESVRLFKKALElytfsDKGPVATSVSAEclyNLGLCYMEEGNFQMAFESFTKAVKANPEFAEAFYhrGLCKVKLNK 1390
Cdd:TIGR02521 113 GKYEQAMQQFEQAIE-----DPLYPQPARSLE---NAGLCALKAGDFDKAEKYLTRALQIDPQRPESLL--ELAELYYLR 182
|
..
gi 1039741865 1391 QN 1392
Cdd:TIGR02521 183 GQ 184
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
1718-1810 |
7.42e-04 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 44.59 E-value: 7.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1718 YSLAYFNAGNIYLHHRQFSQASDYFSTALKFNPENEYaLMNRAVTNSVLKKYEEAEKDFSCAMERCPHWAALYFNRASFY 1797
Cdd:TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVY-YSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204
|
90
....*....|...
gi 1039741865 1798 VYLKKYKLAEEDL 1810
Cdd:TIGR00990 205 DGLGKYADALLDL 217
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1297-1373 |
8.88e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 8.88e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039741865 1297 ISTYALLAKAQMKAKRIKESVRLFKKALELY--TFSDKGPVAtsvsAECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrLLGPDHPLT----ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
1477-1539 |
9.90e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 39.68 E-value: 9.90e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039741865 1477 TAYYNRALCYTKIGEHQMALRDYGIVL-----LLDAGENIALNTLINRGLIYTELKQYGFALEDFKQA 1539
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALeiarrLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERA 71
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1356-1414 |
1.09e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 43.24 E-value: 1.09e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1356 NFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNK-QNSILDFNRALTLNPKHYQAYLSR 1414
Cdd:PLN03088 17 DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNfTEAVADANKAIELDPSLAKAYLRK 76
|
|
| BamD |
COG4105 |
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope ... |
1304-1483 |
1.13e-03 |
|
Outer membrane protein assembly factor BamD, BamD/ComL family [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443281 [Multi-domain] Cd Length: 254 Bit Score: 42.95 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1304 AKAQMKAKRIKESVRLFKKALELYTFSDKGPVAtsvsaecLYNLGLCYMEEGNFQMA---FESFTKAVKANPEFAEAFYH 1380
Cdd:COG4105 39 AKEALEKGDYEKAIKLFEELEPRYPGSPYAEQA-------QLMLAYAYYKQGDYEEAiaaADRFIKLYPNSPNADYAYYL 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1381 RGLCKVKLNK---------QNSILDFNRALTLNPKH-Y----QAYLS-----------RVA-YYGLKGRYSKAILNCNEA 1434
Cdd:COG4105 112 RGLSYYEQSPdsdrdqtstRKAIEAFQELINRYPDSeYaedaKKRIDelrdklarkelEVArYYLKRGAYVAAINRFQNV 191
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039741865 1435 IKLYPES----------VRAYicrgvlkyynrtYKLGITDLS-TAIKMDKNNY--TAYYNRA 1483
Cdd:COG4105 192 LEDYPDTpaveealyllVEAY------------YALGRYDEAqDAAAVLGKNYpdSPYLKDA 241
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1485-1578 |
1.24e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1485 CYTKIGEHQMALRDYGIVLLLDAGENIALNtliNRGLIYTELKQYGFALEdFKQAALMSGTSVSLCQATATCHHRIKEFE 1564
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALN---NLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76
|
90
....*....|....
gi 1039741865 1565 GAVEFFTRAIKINP 1578
Cdd:COG3063 77 EALAYLERALELDP 90
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1721-1752 |
1.66e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.43 E-value: 1.66e-03
10 20 30
....*....|....*....|....*....|..
gi 1039741865 1721 AYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 1752
Cdd:smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1066-1196 |
1.78e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.38 E-value: 1.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1066 AYFKRNLYKQATQDFSAAIHLDPNNWVALYYRACLfrksspYRALQDYSvsvlindgydnlncflhrgilytqlkfwmLA 1145
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLL------LLEQGRYD-----------------------------EA 45
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1039741865 1146 IcDFETVVSLERNATLAYINIGIIYLEhLDNYTEAFWWFTEAIKVDPLYLQ 1196
Cdd:COG3063 46 I-ALEKALKLDPNNAEALLNLAELLLE-LGDYDEALAYLERALELDPSALR 94
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
1341-1373 |
2.49e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 36.99 E-value: 2.49e-03
10 20 30
....*....|....*....|....*....|...
gi 1039741865 1341 AECLYNLGLCYMEEGNFQMAFESFTKAVKANPE 1373
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
1514-1579 |
2.50e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 42.23 E-value: 2.50e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039741865 1514 NTLINRGLIYTELKQYGFALEDFKQAALMSGTSVSLCQATATCHHRIKEFEGAVEFFTRAIKINPH 1579
Cdd:cd24142 1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD 66
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
1033-1113 |
2.68e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1033 YFENGNWIGAVYDFTSLLKLDP---YNSKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWV---ALYYRA-CLFRKSS 1105
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGlSYLELGD 82
|
....*...
gi 1039741865 1106 PYRALQDY 1113
Cdd:COG1729 83 YDKARATL 90
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
966-1002 |
2.72e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 2.72e-03
10 20 30
....*....|....*....|....*....|....*...
gi 1039741865 966 IFREK-DITLAILNYSQAIKCRPKDADLYFKRGEMYEK 1002
Cdd:pfam13414 3 AYYEQgKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
1155-1249 |
2.96e-03 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.08 E-value: 2.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1155 LERNATLAYINigiiylehlDNYTEAFWWFTEAIKVDPLYLQSYICRAETYSKLHKLKRAVIELTRAIHLQPDAIHLYIM 1234
Cdd:PLN03088 5 LEDKAKEAFVD---------DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75
|
90
....*....|....*
gi 1039741865 1235 RGQFLLMMKSYDLAK 1249
Cdd:PLN03088 76 KGTACMKLEEYQTAK 90
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
1699-1730 |
3.51e-03 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 37.07 E-value: 3.51e-03
10 20 30
....*....|....*....|....*....|..
gi 1039741865 1699 GQQQSAMADYQAAISLNPSYSLAYFNAGNIYL 1730
Cdd:pfam13414 8 GKYEEAIEAYKKALKLDPDNPEAYYNLGLAYY 39
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
862-987 |
3.64e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 3.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 862 LPPEVIKYYESEVEKLTQEIKSEKRNLAFVYCRRGAIYRKLGKLQSAMNDLQEAIFQEPFFLNAYWHRHFIYLFQDKVND 941
Cdd:COG5010 27 YEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDE 106
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039741865 942 ALDDLNFITKYNKNHAEAYLSKAEIF-REKDITLAILNYSQAIKCRP 987
Cdd:COG5010 107 AKEYYEKALALSPDNPNAYSNLAALLlSLGQDDEAKAALQRALGTSP 153
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1269-1436 |
3.69e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.05 E-value: 3.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1269 QEALIYSFCENHDKAIHILEGVIASKPDIS-TYALLAKAQMKAKRIKESVRLFKKALELytfSDKgpvatsvSAECLYNL 1347
Cdd:COG4785 78 ERGVAYDSLGDYDLAIADFDQALELDPDLAeAYNNRGLAYLLLGDYDAALEDFDRALEL---DPD-------YAYAYLNR 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1348 GLCYMEEGNFQMAFESFTKAVKANPEFAEAFYHRGLCKVKLNKQNSILDFNRALtlnPKHYQAylsrvayyglKGRYSKA 1427
Cdd:COG4785 148 GIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDW---ATAYLL----------QGDTEEA 214
|
....*....
gi 1039741865 1428 ILNCNEAIK 1436
Cdd:COG4785 215 RELFKLALA 223
|
|
| PTZ00436 |
PTZ00436 |
60S ribosomal protein L19-like protein; Provisional |
13-178 |
3.72e-03 |
|
60S ribosomal protein L19-like protein; Provisional
Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 41.86 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 13 REESYMFKELEKIRQKTKKDyEQLRQRLAAR-------------PTLKARYEDQEKEERPGTAGGSGEKKGHVSWAAKPS 79
Cdd:PTZ00436 133 RNKRNLMEHIHKVKNEKKKE-RQLAEQLAAKrlkdeqhrhkarkQELRKREKDRERARREDAAAAAAAKQKAAAKKAAAP 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 80 SGAQSGERPAAADLQGAPHSARGSPGKPQrfSPRDFYMRSSAFRRHPPYKEA-----PAIAPQVGTTRPVILLRPRSRRK 154
Cdd:PTZ00436 212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAA--AAPAKAAAAPAKAAAPPAKAAappakAAAPPAKAAAPPAKAAAPPAKAA 289
|
170 180
....*....|....*....|....
gi 1039741865 155 RLREKGRGAPVTTRVSKGRAQESP 178
Cdd:PTZ00436 290 APPAKAAAAPAKAAAAPAKAAAAP 313
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1685-1718 |
3.94e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 3.94e-03
10 20 30
....*....|....*....|....*....|....
gi 1039741865 1685 AEFLTNRGVIHEFMGQQQSAMADYQAAISLNPSY 1718
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
1059-1193 |
4.12e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.94 E-value: 4.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1059 ARTYRGRAYFKRNLYKQATQDFSAAIHLDPNNWVALYYRaclfrksspyralqdysvsvlindgydnlncflhrGILYTQ 1138
Cdd:COG5010 56 IESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL-----------------------------------ALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1039741865 1139 LKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPL 1193
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLL-SLGQDDEAKAALQRALGTSPL 154
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1721-1752 |
4.47e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 4.47e-03
10 20 30
....*....|....*....|....*....|..
gi 1039741865 1721 AYFNAGNIYLHHRQFSQASDYFSTALKFNPEN 1752
Cdd:pfam00515 3 ALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
1205-1296 |
4.87e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.23 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1205 YSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQFLLMMKSYDLAKfTIYQVAEMNKGIIEMSpIQEALIYSFCENHDKAI 1284
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEAL-LNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 1039741865 1285 HILEGVIASKPD 1296
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
1816-1851 |
5.02e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 40.67 E-value: 5.02e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1039741865 1816 LKPDEAIMYNLRAQVRGKMGLIAEAMSDYNQALDLE 1851
Cdd:COG4785 68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD 103
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
1057-1090 |
5.13e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 5.13e-03
10 20 30
....*....|....*....|....*....|....
gi 1039741865 1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
1124-1237 |
5.40e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039741865 1124 DNLNCFLHRGILYTQLKFWMLAICDFETVVSLERNATLAYINIGIIYLeHLDNYTEAFWWFTEAIKVDPLYLQSYICRAE 1203
Cdd:COG4235 15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALL-AAGDTEEAEELLERALALDPDNPEALYLLGL 93
|
90 100 110
....*....|....*....|....*....|....
gi 1039741865 1204 TYSKLHKLKRAVIELTRAIHLQPDAIHLYIMRGQ 1237
Cdd:COG4235 94 AAFQQGDYAEAIAAWQKLLALLPADAPARLLEAS 127
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
1057-1090 |
6.98e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.89 E-value: 6.98e-03
10 20 30
....*....|....*....|....*....|....
gi 1039741865 1057 SKARTYRGRAYFKRNLYKQATQDFSAAIHLDPNN 1090
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| |
