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Conserved domains on  [gi|1039735220|ref|XP_017169684|]
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photoreceptor disk component PRCD isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Rod_cone_degen super family cl21066
Progressive rod-cone degeneration; This family of proteins is involved in vision.
1-46 1.62e-25

Progressive rod-cone degeneration; This family of proteins is involved in vision.


The actual alignment was detected with superfamily member pfam15201:

Pssm-ID: 291855  Cd Length: 54  Bit Score: 91.61  E-value: 1.62e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1039735220   1 MCTTLFLFS-LAMLWRRRFTNRVEPEPSRVDGTVVGSGSDTDLQSTG 46
Cdd:pfam15201   1 MCTTLFLLStLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSG 47
 
Name Accession Description Interval E-value
Rod_cone_degen pfam15201
Progressive rod-cone degeneration; This family of proteins is involved in vision.
1-46 1.62e-25

Progressive rod-cone degeneration; This family of proteins is involved in vision.


Pssm-ID: 291855  Cd Length: 54  Bit Score: 91.61  E-value: 1.62e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1039735220   1 MCTTLFLFS-LAMLWRRRFTNRVEPEPSRVDGTVVGSGSDTDLQSTG 46
Cdd:pfam15201   1 MCTTLFLLStLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSG 47
 
Name Accession Description Interval E-value
Rod_cone_degen pfam15201
Progressive rod-cone degeneration; This family of proteins is involved in vision.
1-46 1.62e-25

Progressive rod-cone degeneration; This family of proteins is involved in vision.


Pssm-ID: 291855  Cd Length: 54  Bit Score: 91.61  E-value: 1.62e-25
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1039735220   1 MCTTLFLFS-LAMLWRRRFTNRVEPEPSRVDGTVVGSGSDTDLQSTG 46
Cdd:pfam15201   1 MCTTLFLLStLAMLWRRRFANRVQPEPSRVDGAVVGSGSDTDLQSSG 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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