|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
772-1065 |
2.98e-54 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2). :
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 191.91 E-value: 2.98e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 772 TRSLCPQMLQTPGWRKQLEGVLVGSGGLPELLPEH-----LLQDAFSRLRDMRLSITGTLAESIVAQALAGLHAARDRLV 846
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKStlleqAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 847 ERLTQQ-APVTMAPAVPPLGGNELSPLETGGLEELFFPTEKEEEREKDESSSWKWLEPSNCFHLVS-SLHGAAEEAERDP 924
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPDGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIHSRKLRPVSvAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 925 ELA-APGEDAEPQAgPSARGSPSPAAPGPPAGPLPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVppALLQEGN 1003
Cdd:pfam16000 161 EEVpIHVEDASSGP-PLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGP--AQDGEQN 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039789752 1004 GLTARVDEGVEEFFSKRLIQQDHFWAPEEDPATEGGATPVPRTLRKKLGTLFAFKKPRSTRG 1065
Cdd:pfam16000 238 GLSGRVDEGLEDFFSKKVIKLSTPTSPTSEPSSSSLFPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| RNA1 super family |
cl34950 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
288-640 |
8.18e-19 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis]; The actual alignment was detected with superfamily member COG5238:
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 91.00 E-value: 8.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 288 HLEHC-PGALRRLSLAQTGLTPRGMRALGRALAtnATFDSTLTHLDLSGNP-----GALGPSQDSGGLYTFLSRPNVL-- 359
Cdd:COG5238 96 GAEEVsPVALAETATAVATPPPDLRRIMAKTLE--DSLILYLALPRRINLIqvlkdPLGGNAVHLLGLAARLGLLAAIsm 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 360 --AYLNLAGTDATLGTLFTALAGgcCSSLT-HLEASRNI----FSR--MKSQAAPAALQRFLGGTRmLRHLGLAGCKLPP 430
Cdd:COG5238 174 akALQNNSVETVYLGCNQIGDEG--IEELAeALTQNTTVttlwLKRnpIGDEGAEILAEALKGNKS-LTTLDLSNNQIGD 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 431 EALRALLEGLALNTQIHdlHLDLSACELRSVGAQVIQDLVCDAGALSSLDLSDNGFGSDMVtlvlaigrsrslkhVALgr 510
Cdd:COG5238 251 EGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGA--------------IAL-- 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 511 nfnvrcketlddvlhriAQLMQDDDcPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKALRV 589
Cdd:COG5238 313 -----------------AEGLQGNK-TLHTLNLAYNGIGaQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEG 374
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1039789752 590 NTRLRSVIWDRNNTSALGLLDVAQALEQNhSLKSMPLPLNDVTQAHRSRPE 640
Cdd:COG5238 375 NTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRLE 424
|
|
| Carm_PH super family |
cl39358 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
43-116 |
2.50e-11 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids. The actual alignment was detected with superfamily member pfam17888:
Pssm-ID: 436119 Cd Length: 94 Bit Score: 61.14 E-value: 2.50e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039789752 43 ILALLRWRAYLLHTCLPLRVDCTFSYLEVQAMALQeTPPRVTFELESLPeLVLEFPCVAALEQLAQHVAAAIKK 116
Cdd:pfam17888 20 ILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSR-NPNQVIVETDKSN-YSLKLASEEDVDHVVGHILTALKK 91
|
|
| PPP1R42 super family |
cl42388 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
210-336 |
1.08e-07 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation. The actual alignment was detected with superfamily member cd00116:
Pssm-ID: 455733 [Multi-domain] Cd Length: 319 Bit Score: 55.44 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 210 RRLSCEDMKLSLEVSEQILHMTSQSSYLEELVLEACGLRGDFVRRLAQALAGhfNSGLRELSLSGNLLDDRGMAALSRHL 289
Cdd:cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039789752 290 EHcPGALRRLSLAQTGLTPRGMRALGRALATNATfdsTLTHLDLSGN 336
Cdd:cd00116 218 AS-LKSLEVLNLGDNNLTDAGAAALASALLSPNI---SLLTLSLSCN 260
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
772-1065 |
2.98e-54 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 191.91 E-value: 2.98e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 772 TRSLCPQMLQTPGWRKQLEGVLVGSGGLPELLPEH-----LLQDAFSRLRDMRLSITGTLAESIVAQALAGLHAARDRLV 846
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKStlleqAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 847 ERLTQQ-APVTMAPAVPPLGGNELSPLETGGLEELFFPTEKEEEREKDESSSWKWLEPSNCFHLVS-SLHGAAEEAERDP 924
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPDGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIHSRKLRPVSvAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 925 ELA-APGEDAEPQAgPSARGSPSPAAPGPPAGPLPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVppALLQEGN 1003
Cdd:pfam16000 161 EEVpIHVEDASSGP-PLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGP--AQDGEQN 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039789752 1004 GLTARVDEGVEEFFSKRLIQQDHFWAPEEDPATEGGATPVPRTLRKKLGTLFAFKKPRSTRG 1065
Cdd:pfam16000 238 GLSGRVDEGLEDFFSKKVIKLSTPTSPTSEPSSSSLFPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
288-640 |
8.18e-19 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 91.00 E-value: 8.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 288 HLEHC-PGALRRLSLAQTGLTPRGMRALGRALAtnATFDSTLTHLDLSGNP-----GALGPSQDSGGLYTFLSRPNVL-- 359
Cdd:COG5238 96 GAEEVsPVALAETATAVATPPPDLRRIMAKTLE--DSLILYLALPRRINLIqvlkdPLGGNAVHLLGLAARLGLLAAIsm 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 360 --AYLNLAGTDATLGTLFTALAGgcCSSLT-HLEASRNI----FSR--MKSQAAPAALQRFLGGTRmLRHLGLAGCKLPP 430
Cdd:COG5238 174 akALQNNSVETVYLGCNQIGDEG--IEELAeALTQNTTVttlwLKRnpIGDEGAEILAEALKGNKS-LTTLDLSNNQIGD 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 431 EALRALLEGLALNTQIHdlHLDLSACELRSVGAQVIQDLVCDAGALSSLDLSDNGFGSDMVtlvlaigrsrslkhVALgr 510
Cdd:COG5238 251 EGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGA--------------IAL-- 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 511 nfnvrcketlddvlhriAQLMQDDDcPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKALRV 589
Cdd:COG5238 313 -----------------AEGLQGNK-TLHTLNLAYNGIGaQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEG 374
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1039789752 590 NTRLRSVIWDRNNTSALGLLDVAQALEQNhSLKSMPLPLNDVTQAHRSRPE 640
Cdd:COG5238 375 NTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRLE 424
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
269-634 |
5.63e-15 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 77.78 E-value: 5.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 269 ELSLSGNLLDDRGMAALSRHLeHCPGALRrlsLAQTGLTPRGMRALGRALATNatfdSTLTHLDLSGNpgalgpsqdsgg 348
Cdd:cd00116 2 QLSLKGELLKTERATELLPKL-LCLQVLR---LEGNTLGEEAAKALASALRPQ----PSLKELCLSLN------------ 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 349 lytflsrpnvlaylNLAGTDATLGTLFTALAGGCCssLTHLEASRNIFSrmksQAAPAALQRFLGGTrMLRHLGLAGCKL 428
Cdd:cd00116 62 --------------ETGRIPRGLQSLLQGLTKGCG--LQELDLSDNALG----PDGCGVLESLLRSS-SLQELKLNNNGL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 429 PPEALRALLEGLalntqihdlhldlsacelrsvgaqviQDLVCdagALSSLDLSDNGFGSD-MVTLVLAIGRSRSLKHVA 507
Cdd:cd00116 121 GDRGLRLLAKGL--------------------------KDLPP---ALEKLVLGRNRLEGAsCEALAKALRANRDLKELN 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 508 LGRNfnvrckETLDDVLHRIAQLMQDDdCPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKA 586
Cdd:cd00116 172 LANN------GIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTdEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1039789752 587 LR-VNTRLRSVIWDRNNTSALGLLDVAQALEQNHSLKSMPLPLNDVTQA 634
Cdd:cd00116 245 LLsPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293
|
|
| Carm_PH |
pfam17888 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
43-116 |
2.50e-11 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids.
Pssm-ID: 436119 Cd Length: 94 Bit Score: 61.14 E-value: 2.50e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039789752 43 ILALLRWRAYLLHTCLPLRVDCTFSYLEVQAMALQeTPPRVTFELESLPeLVLEFPCVAALEQLAQHVAAAIKK 116
Cdd:pfam17888 20 ILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSR-NPNQVIVETDKSN-YSLKLASEEDVDHVVGHILTALKK 91
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
210-336 |
1.08e-07 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 55.44 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 210 RRLSCEDMKLSLEVSEQILHMTSQSSYLEELVLEACGLRGDFVRRLAQALAGhfNSGLRELSLSGNLLDDRGMAALSRHL 289
Cdd:cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039789752 290 EHcPGALRRLSLAQTGLTPRGMRALGRALATNATfdsTLTHLDLSGN 336
Cdd:cd00116 218 AS-LKSLEVLNLGDNNLTDAGAAALASALLSPNI---SLLTLSLSCN 260
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
562-588 |
8.30e-05 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 40.85 E-value: 8.30e-05
|
| LRR_6 |
pfam13516 |
Leucine Rich repeat; |
561-584 |
1.01e-04 |
|
Leucine Rich repeat;
Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 40.30 E-value: 1.01e-04
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
772-1065 |
2.98e-54 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 191.91 E-value: 2.98e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 772 TRSLCPQMLQTPGWRKQLEGVLVGSGGLPELLPEH-----LLQDAFSRLRDMRLSITGTLAESIVAQALAGLHAARDRLV 846
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKStlleqAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 847 ERLTQQ-APVTMAPAVPPLGGNELSPLETGGLEELFFPTEKEEEREKDESSSWKWLEPSNCFHLVS-SLHGAAEEAERDP 924
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPDGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIHSRKLRPVSvAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 925 ELA-APGEDAEPQAgPSARGSPSPAAPGPPAGPLPRMDLPPAGQPLRHPTRARPRPRRQHHHRPPPGGPQVppALLQEGN 1003
Cdd:pfam16000 161 EEVpIHVEDASSGP-PLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGP--AQDGEQN 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039789752 1004 GLTARVDEGVEEFFSKRLIQQDHFWAPEEDPATEGGATPVPRTLRKKLGTLFAFKKPRSTRG 1065
Cdd:pfam16000 238 GLSGRVDEGLEDFFSKKVIKLSTPTSPTSEPSSSSLFPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
288-640 |
8.18e-19 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 91.00 E-value: 8.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 288 HLEHC-PGALRRLSLAQTGLTPRGMRALGRALAtnATFDSTLTHLDLSGNP-----GALGPSQDSGGLYTFLSRPNVL-- 359
Cdd:COG5238 96 GAEEVsPVALAETATAVATPPPDLRRIMAKTLE--DSLILYLALPRRINLIqvlkdPLGGNAVHLLGLAARLGLLAAIsm 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 360 --AYLNLAGTDATLGTLFTALAGgcCSSLT-HLEASRNI----FSR--MKSQAAPAALQRFLGGTRmLRHLGLAGCKLPP 430
Cdd:COG5238 174 akALQNNSVETVYLGCNQIGDEG--IEELAeALTQNTTVttlwLKRnpIGDEGAEILAEALKGNKS-LTTLDLSNNQIGD 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 431 EALRALLEGLALNTQIHdlHLDLSACELRSVGAQVIQDLVCDAGALSSLDLSDNGFGSDMVtlvlaigrsrslkhVALgr 510
Cdd:COG5238 251 EGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGA--------------IAL-- 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 511 nfnvrcketlddvlhriAQLMQDDDcPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKALRV 589
Cdd:COG5238 313 -----------------AEGLQGNK-TLHTLNLAYNGIGaQGAIALAKALQENTTLHSLDLSDNQIGDEGAIALAKYLEG 374
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1039789752 590 NTRLRSVIWDRNNTSALGLLDVAQALEQNhSLKSMPLPLNDVTQAHRSRPE 640
Cdd:COG5238 375 NTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQRLE 424
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
269-634 |
5.63e-15 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 77.78 E-value: 5.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 269 ELSLSGNLLDDRGMAALSRHLeHCPGALRrlsLAQTGLTPRGMRALGRALATNatfdSTLTHLDLSGNpgalgpsqdsgg 348
Cdd:cd00116 2 QLSLKGELLKTERATELLPKL-LCLQVLR---LEGNTLGEEAAKALASALRPQ----PSLKELCLSLN------------ 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 349 lytflsrpnvlaylNLAGTDATLGTLFTALAGGCCssLTHLEASRNIFSrmksQAAPAALQRFLGGTrMLRHLGLAGCKL 428
Cdd:cd00116 62 --------------ETGRIPRGLQSLLQGLTKGCG--LQELDLSDNALG----PDGCGVLESLLRSS-SLQELKLNNNGL 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 429 PPEALRALLEGLalntqihdlhldlsacelrsvgaqviQDLVCdagALSSLDLSDNGFGSD-MVTLVLAIGRSRSLKHVA 507
Cdd:cd00116 121 GDRGLRLLAKGL--------------------------KDLPP---ALEKLVLGRNRLEGAsCEALAKALRANRDLKELN 171
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 508 LGRNfnvrckETLDDVLHRIAQLMQDDdCPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKA 586
Cdd:cd00116 172 LANN------GIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTdEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 1039789752 587 LR-VNTRLRSVIWDRNNTSALGLLDVAQALEQNHSLKSMPLPLNDVTQA 634
Cdd:cd00116 245 LLsPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
267-598 |
3.63e-14 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 75.08 E-value: 3.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 267 LRELSLSGNLLDDRGMAALSRHLEHCPGALR-RLSLAQTGLTPRGMRALGRALATNATfdstLTHLDLSGNpgALGPSQd 345
Cdd:cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKElCLSLNETGRIPRGLQSLLQGLTKGCG----LQELDLSDN--ALGPDG- 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 346 SGGLYTFLSRPNV-LAYLNLAGTDATLGTLFTALAGGCCSSLTHLEASRNIFSRMKSQAAPAALQRflggTRMLRHLGLA 424
Cdd:cd00116 98 CGVLESLLRSSSLqELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA----NRDLKELNLA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 425 GCKLPPEALRALLEGLALNTQIHdlHLDLSACELRSVGAQVIQDLVCDAGALSSLDLSDNGFGS-DMVTLVLAigrsrsL 503
Cdd:cd00116 174 NNGIGDAGIRALAEGLKANCNLE--VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDaGAAALASA------L 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 504 KHVAlgrnfnvrcketlddvlhriaqlmqdddCPLQSLSVAESRLKQ-GASILIRALGTNPKLTALDISGNAIGDAGAKM 582
Cdd:cd00116 246 LSPN----------------------------ISLLTLSLSCNDITDdGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297
|
330
....*....|....*.
gi 1039789752 583 LAKALRVNTRLRSVIW 598
Cdd:cd00116 298 LAESLLEPGNELESLW 313
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
193-453 |
4.75e-14 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 75.98 E-value: 4.75e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 193 SRDLALSVAALSYNLWFRRLSCEDMKLSLEVSEQILHMTSQSSYLEELVLEACGLRGDFVRRLAQALAGhfNSGLRELSL 272
Cdd:COG5238 166 GLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALKG--NKSLTTLDL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 273 SGNLLDDRGMAALSRHLEHcPGALRRLSLAQTGLTPRGMRALGRALATNatfdSTLTHLDLSGN----PGALgpsqdsgG 348
Cdd:COG5238 244 SNNQIGDEGVIALAEALKN-NTTVETLYLSGNQIGAEGAIALAKALQGN----TTLTSLDLSVNrigdEGAI-------A 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 349 LYTFLSRPNVLAYLNLAG---TDATLGTLFTALAGGccSSLTHLEASRNifsRMKSQAApAALQRFLGGTRMLRHLGLAG 425
Cdd:COG5238 312 LAEGLQGNKTLHTLNLAYngiGAQGAIALAKALQEN--TTLHSLDLSDN---QIGDEGA-IALAKYLEGNTTLRELNLGK 385
|
250 260
....*....|....*....|....*...
gi 1039789752 426 CKLPPEALRALLEGLALNtQIHDLHLDL 453
Cdd:COG5238 386 NNIGKQGAEALIDALQTN-RLHTLILDG 412
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
433-712 |
1.40e-13 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 74.83 E-value: 1.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 433 LRALLEGLALNTQIHDLHLDLSACELrSVGAQVIQDLVCDAGALSSLDLSDNGFGSDMVT-LVLAIGRSRSLKHVALGRN 511
Cdd:COG5238 140 RINLIQVLKDPLGGNAVHLLGLAARL-GLLAAISMAKALQNNSVETVYLGCNQIGDEGIEeLAEALTQNTTVTTLWLKRN 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 512 fnvrckETLDDVLHRIAQLMQDDDcPLQSLSVAESRLK-QGASILIRALGTNPKLTALDISGNAIGDAGAKMLAKALRVN 590
Cdd:COG5238 219 ------PIGDEGAEILAEALKGNK-SLTTLDLSNNQIGdEGVIALAEALKNNTTVETLYLSGNQIGAEGAIALAKALQGN 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 591 TRLRSVIWDRNNTSALGLLDVAQALEQNHSLKSMPLPLNDVTQAhrsrpelttrAVHQIQACLWRNNQVdSTSDLKPclq 670
Cdd:COG5238 292 TTLTSLDLSVNRIGDEGAIALAEGLQGNKTLHTLNLAYNGIGAQ----------GAIALAKALQENTTL-HSLDLSD--- 357
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1039789752 671 plGLISDHSeqeVNELCQSVQEHMELL-----GCGAGPQGEVAVHQA 712
Cdd:COG5238 358 --NQIGDEG---AIALAKYLEGNTTLRelnlgKNNIGKQGAEALIDA 399
|
|
| Carm_PH |
pfam17888 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
43-116 |
2.50e-11 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids.
Pssm-ID: 436119 Cd Length: 94 Bit Score: 61.14 E-value: 2.50e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039789752 43 ILALLRWRAYLLHTCLPLRVDCTFSYLEVQAMALQeTPPRVTFELESLPeLVLEFPCVAALEQLAQHVAAAIKK 116
Cdd:pfam17888 20 ILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSR-NPNQVIVETDKSN-YSLKLASEEDVDHVVGHILTALKK 91
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
237-494 |
2.01e-09 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 60.83 E-value: 2.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 237 LEELVLEACGLRGDFVRRLAQALAghfNSGLRELSLSGNLLDDRGMAALSRHLEHCPGALRRLSLAQTGLTPRGMRALGR 316
Cdd:cd00116 83 LQELDLSDNALGPDGCGVLESLLR---SSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 317 ALATNatfdSTLTHLDLSGNPgalgpsqdsgglytflsrpnvlayLNLAGTDAtlgtLFTALAGGCcsSLTHLEASRNIF 396
Cdd:cd00116 160 ALRAN----RDLKELNLANNG------------------------IGDAGIRA----LAEGLKANC--NLEVLDLNNNGL 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 397 SRMKSQAAPAALQRflggTRMLRHLGLAGCKLPPEALRALLEGL-ALNTQIhdLHLDLSACELRSVGA----QVIQDLVC 471
Cdd:cd00116 206 TDEGASALAETLAS----LKSLEVLNLGDNNLTDAGAAALASALlSPNISL--LTLSLSCNDITDDGAkdlaEVLAEKES 279
|
250 260
....*....|....*....|...
gi 1039789752 472 dagaLSSLDLSDNGFGSDMVTLV 494
Cdd:cd00116 280 ----LLELDLRGNKFGEEGAQLL 298
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
328-622 |
6.17e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 59.95 E-value: 6.17e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 328 LTHLDLSGNPGalgpsqdsgglytfLSRPNVLAYLNLAGTDatLGTLFTALAGgcCSSLTHLEASRNIFSrmksqaapaA 407
Cdd:COG4886 98 LTELDLSGNEE--------------LSNLTNLESLDLSGNQ--LTDLPEELAN--LTNLKELDLSNNQLT---------D 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 408 LQRFLGGTRMLRHLGLAGCKLP--PEALRAL--LEGLAL-NTQIHDLHLDLSACElrsvgaqviqdlvcdagALSSLDLS 482
Cdd:COG4886 151 LPEPLGNLTNLKSLDLSNNQLTdlPEELGNLtnLKELDLsNNQITDLPEPLGNLT-----------------NLEELDLS 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 483 DNGFGSdmvtLVLAIGRSRSLKHVALGRNfnvrckeTLDDvLHRIAQLMQdddcpLQSLSVAESRLKQgasilIRALGTN 562
Cdd:COG4886 214 GNQLTD----LPEPLANLTNLETLDLSNN-------QLTD-LPELGNLTN-----LEELDLSNNQLTD-----LPPLANL 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 563 PKLTALDISGNAIGDAGAKMLAKALRVNTRLRSVIWDRNNTSALGLLDVAQALEQNHSLK 622
Cdd:COG4886 272 TNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLK 331
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
210-336 |
1.08e-07 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 55.44 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 210 RRLSCEDMKLSLEVSEQILHMTSQSSYLEELVLEACGLRGDFVRRLAQALAGhfNSGLRELSLSGNLLDDRGMAALSRHL 289
Cdd:cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETL 217
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1039789752 290 EHcPGALRRLSLAQTGLTPRGMRALGRALATNATfdsTLTHLDLSGN 336
Cdd:cd00116 218 AS-LKSLEVLNLGDNNLTDAGAAALASALLSPNI---SLLTLSLSCN 260
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
187-453 |
4.56e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 47.62 E-value: 4.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 187 DFSHFGSRDLALSVAALSyNLwfRRLSCEDMKLSlEVSEQILHMTSqssyLEELVLEACGLRGdfvrrLAQALAGhfNSG 266
Cdd:COG4886 119 DLSGNQLTDLPEELANLT-NL--KELDLSNNQLT-DLPEPLGNLTN----LKSLDLSNNQLTD-----LPEELGN--LTN 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 267 LRELSLSGNLLDDrgmaaLSRHLEHCPgALRRLSLAQTGLTprgmrALGRALATNatfdSTLTHLDLSGNPgalgpsqds 346
Cdd:COG4886 184 LKELDLSNNQITD-----LPEPLGNLT-NLEELDLSGNQLT-----DLPEPLANL----TNLETLDLSNNQ--------- 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 347 ggLYTF--LSRPNVLAYLNLAGTDatlgtlFTAL-AGGCCSSLTHLEASRNIFSRMKSQAAPAALQRFLGGTRMLRHLGL 423
Cdd:COG4886 240 --LTDLpeLGNLTNLEELDLSNNQ------LTDLpPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLL 311
|
250 260 270
....*....|....*....|....*....|
gi 1039789752 424 AGCKLPPEALRALLEGLALNTQIHDLHLDL 453
Cdd:COG4886 312 ELLILLLLLTTLLLLLLLLKGLLVTLTTLA 341
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
265-484 |
6.73e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 46.85 E-value: 6.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 265 SGLRELSLSGNLLDDrgmaaLSRHLEHCPgALRRLSLAQTGLTprgmrALGRALATNatfdSTLTHLDLSGN-----PGA 339
Cdd:COG4886 113 TNLESLDLSGNQLTD-----LPEELANLT-NLKELDLSNNQLT-----DLPEPLGNL----TNLKSLDLSNNqltdlPEE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 340 LGPsqdsgglytfLSRpnvLAYLNLAGTDatLGTLFTALAGgcCSSLTHLEASRNIFSRMksqaaPAALQRFlggtRMLR 419
Cdd:COG4886 178 LGN----------LTN---LKELDLSNNQ--ITDLPEPLGN--LTNLEELDLSGNQLTDL-----PEPLANL----TNLE 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039789752 420 HLGLAGCKLppEALRAL-----LEGLAL-NTQIHDL----------HLDLSACELRSVGAQVIQDLVCDAGALSSLDLSD 483
Cdd:COG4886 232 TLDLSNNQL--TDLPELgnltnLEELDLsNNQLTDLpplanltnlkTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLN 309
|
.
gi 1039789752 484 N 484
Cdd:COG4886 310 L 310
|
|
| LRR_RI |
smart00368 |
Leucine rich repeat, ribonuclease inhibitor type; |
562-588 |
8.30e-05 |
|
Leucine rich repeat, ribonuclease inhibitor type;
Pssm-ID: 197686 [Multi-domain] Cd Length: 28 Bit Score: 40.85 E-value: 8.30e-05
|
| LRR_6 |
pfam13516 |
Leucine Rich repeat; |
561-584 |
1.01e-04 |
|
Leucine Rich repeat;
Pssm-ID: 463907 [Multi-domain] Cd Length: 24 Bit Score: 40.30 E-value: 1.01e-04
|
|