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Conserved domains on  [gi|795220875|ref|XP_011948840|]
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PREDICTED: deleted in esophageal cancer 1, partial [Cercocebus atys]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DEC1 super family cl24434
Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The ...
 1-64 1.10e-39

Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The protein has been identified as being deleted in oesophageal cancers so is also referred to as candidate tumour suppressor CTS9. Proteins in this family are approximately 70 amino acids in length.


The actual alignment was detected with superfamily member pfam15859:

Pssm-ID: 434977  Cd Length: 70  Bit Score: 124.82  E-value: 1.10e-39
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 795220875   1 EAGKWKSIVPAPGEGLLAMLYVMVFTDALHRERSVKWQAGVFYNGGKDFAVSLVRPKTAEGIGN 64
Cdd:pfam15859  7 EAGKWKSIVPAPGEGLLAVLHMMVFTDALHRERSVKWQAGVCYNGGKDFAVSLVRPKAAEGIAD 70
 
Name Accession Description Interval E-value
DEC1 pfam15859
Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The ...
 1-64 1.10e-39

Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The protein has been identified as being deleted in oesophageal cancers so is also referred to as candidate tumour suppressor CTS9. Proteins in this family are approximately 70 amino acids in length.


Pssm-ID: 434977  Cd Length: 70  Bit Score: 124.82  E-value: 1.10e-39
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 795220875   1 EAGKWKSIVPAPGEGLLAMLYVMVFTDALHRERSVKWQAGVFYNGGKDFAVSLVRPKTAEGIGN 64
Cdd:pfam15859  7 EAGKWKSIVPAPGEGLLAVLHMMVFTDALHRERSVKWQAGVCYNGGKDFAVSLVRPKAAEGIAD 70
 
Name Accession Description Interval E-value
DEC1 pfam15859
Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The ...
 1-64 1.10e-39

Deleted in esophageal cancer 1 family; DEC1 is a family of proteins found in primates. The protein has been identified as being deleted in oesophageal cancers so is also referred to as candidate tumour suppressor CTS9. Proteins in this family are approximately 70 amino acids in length.


Pssm-ID: 434977  Cd Length: 70  Bit Score: 124.82  E-value: 1.10e-39
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 795220875   1 EAGKWKSIVPAPGEGLLAMLYVMVFTDALHRERSVKWQAGVFYNGGKDFAVSLVRPKTAEGIGN 64
Cdd:pfam15859  7 EAGKWKSIVPAPGEGLLAVLHMMVFTDALHRERSVKWQAGVCYNGGKDFAVSLVRPKAAEGIAD 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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