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Conserved domains on  [gi|767936174|ref|XP_011541809|]
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WD repeat-containing protein 41 isoform X7 [Homo sapiens]

Protein Classification

WD40 repeat domain-containing protein( domain architecture ID 1000017)

WD40 repeat domain-containing protein similar to a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
WD40 super family cl29593
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 38-330 5.65e-20

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


The actual alignment was detected with superfamily member cd00200:

Pssm-ID: 475233 [Multi-domain]  Cd Length: 289  Bit Score: 88.16  E-value: 5.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  38 VLKAHHDIVRFLVQLDDYRF-ASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVI 116
Cdd:cd00200    4 TLKGHTGGVTCVAFSPDGKLlATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-------GTYLASGSSDKTIR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 117 VWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGND--LCVWNRKLDLLCKT--SHLSDtgISALVEIPKNCVVAAVG 192
Cdd:cd00200   77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDktIKVWDVETGKCLTTlrGHTDW--VNSVAFSPDGTFVASSS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 193 KELIIfRLVAPTEGSLewdileVKRLLDHQDNILSLINVNDL-SFVTGSHVGELIIWDaldwtmqayernfwdpspqLDT 271
Cdd:cd00200  155 QDGTI-KLWDLRTGKC------VATLTGHTGEVNSVAFSPDGeKLLSSSSDGTIKLWD-------------------LST 208

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767936174 272 QQEIKLCQKSNDISIH-HFTCDEENVFAAVGRG-LYVYSLQMKRVIACQkTAHDSNVLHVA 330
Cdd:cd00200  209 GKCLGTLRGHENGVNSvAFSPDGYLLASGSEDGtIRVWDLRTGECVQTL-SGHTNSVTSLA 268
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 38-330 5.65e-20

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 88.16  E-value: 5.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  38 VLKAHHDIVRFLVQLDDYRF-ASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVI 116
Cdd:cd00200    4 TLKGHTGGVTCVAFSPDGKLlATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-------GTYLASGSSDKTIR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 117 VWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGND--LCVWNRKLDLLCKT--SHLSDtgISALVEIPKNCVVAAVG 192
Cdd:cd00200   77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDktIKVWDVETGKCLTTlrGHTDW--VNSVAFSPDGTFVASSS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 193 KELIIfRLVAPTEGSLewdileVKRLLDHQDNILSLINVNDL-SFVTGSHVGELIIWDaldwtmqayernfwdpspqLDT 271
Cdd:cd00200  155 QDGTI-KLWDLRTGKC------VATLTGHTGEVNSVAFSPDGeKLLSSSSDGTIKLWD-------------------LST 208

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767936174 272 QQEIKLCQKSNDISIH-HFTCDEENVFAAVGRG-LYVYSLQMKRVIACQkTAHDSNVLHVA 330
Cdd:cd00200  209 GKCLGTLRGHENGVNSvAFSPDGYLLASGSEDGtIRVWDLRTGECVQTL-SGHTNSVTSLA 268
WD40 COG2319
WD40 repeat [General function prediction only];
34-250 3.71e-17

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 81.50  E-value: 3.71e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  34 TELLVLKAHHDIVRFL-VQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASAD 112
Cdd:COG2319  111 LLLRTLTGHTGAVRSVaFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPD-------GKLLASGSDD 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 113 RTVIVWDGDTTRQVQRISCFQSTVKCLTVL---QRLdvwLSGGND--LCVWNRKLDLLCKTSHLSDTGISALVEIPKNCV 187
Cdd:COG2319  184 GTVRLWDLATGKLLRTLTGHTGAVRSVAFSpdgKLL---ASGSADgtVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRL 260

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767936174 188 VAAVGKELIIfRLvaptegsleWDI---LEVKRLLDHQDNILSL-INVNDLSFVTGSHVGELIIWDA 250
Cdd:COG2319  261 LASGSADGTV-RL---------WDLatgELLRTLTGHSGGVNSVaFSPDGKLLASGSDDGTVRLWDL 317
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 73-119 1.06e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 39.22  E-value: 1.06e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 767936174    73 TGEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVIVWD 119
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPD-------GKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
74-119 1.00e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 36.17  E-value: 1.00e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 767936174   74 GEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVIVWD 119
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPD-------GKLLASGSDDGTVKVWD 39
 
Name Accession Description Interval E-value
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 38-330 5.65e-20

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 88.16  E-value: 5.65e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  38 VLKAHHDIVRFLVQLDDYRF-ASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVI 116
Cdd:cd00200    4 TLKGHTGGVTCVAFSPDGKLlATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-------GTYLASGSSDKTIR 76

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 117 VWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGND--LCVWNRKLDLLCKT--SHLSDtgISALVEIPKNCVVAAVG 192
Cdd:cd00200   77 LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDktIKVWDVETGKCLTTlrGHTDW--VNSVAFSPDGTFVASSS 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 193 KELIIfRLVAPTEGSLewdileVKRLLDHQDNILSLINVNDL-SFVTGSHVGELIIWDaldwtmqayernfwdpspqLDT 271
Cdd:cd00200  155 QDGTI-KLWDLRTGKC------VATLTGHTGEVNSVAFSPDGeKLLSSSSDGTIKLWD-------------------LST 208

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767936174 272 QQEIKLCQKSNDISIH-HFTCDEENVFAAVGRG-LYVYSLQMKRVIACQkTAHDSNVLHVA 330
Cdd:cd00200  209 GKCLGTLRGHENGVNSvAFSPDGYLLASGSEDGtIRVWDLRTGECVQTL-SGHTNSVTSLA 268
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 36-255 2.28e-18

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 83.92  E-value: 2.28e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  36 LLVLKAHHDIVRFLVQL-DDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIitfpsleSCEEKNQLILTASADRT 114
Cdd:cd00200   44 LRTLKGHTGPVRDVAASaDGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-------AFSPDGRILSSSSRDKT 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 115 VIVWDGDTTRQVQRISCFQSTVKCLTVLQRLDVWLSGGNDLCV--WNRKLDLLCKTSHLSDTGISALVEIPKN--CVVAA 190
Cdd:cd00200  117 IKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIklWDLRTGKCVATLTGHTGEVNSVAFSPDGekLLSSS 196

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767936174 191 VGKELIIfrlvaptegsleWDILE---VKRLLDHQDNILSL-INVNDLSFVTGSHVGELIIWDALDWTM 255
Cdd:cd00200  197 SDGTIKL------------WDLSTgkcLGTLRGHENGVNSVaFSPDGYLLASGSEDGTIRVWDLRTGEC 253
WD40 COG2319
WD40 repeat [General function prediction only];
34-250 3.71e-17

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 81.50  E-value: 3.71e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  34 TELLVLKAHHDIVRFL-VQLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASAD 112
Cdd:COG2319  111 LLLRTLTGHTGAVRSVaFSPDGKTLASGSADGTVRLWDLATGKLLRTLTGHSGAVTSVAFSPD-------GKLLASGSDD 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 113 RTVIVWDGDTTRQVQRISCFQSTVKCLTVL---QRLdvwLSGGND--LCVWNRKLDLLCKTSHLSDTGISALVEIPKNCV 187
Cdd:COG2319  184 GTVRLWDLATGKLLRTLTGHTGAVRSVAFSpdgKLL---ASGSADgtVRLWDLATGKLLRTLTGHSGSVRSVAFSPDGRL 260

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767936174 188 VAAVGKELIIfRLvaptegsleWDI---LEVKRLLDHQDNILSL-INVNDLSFVTGSHVGELIIWDA 250
Cdd:COG2319  261 LASGSADGTV-RL---------WDLatgELLRTLTGHSGGVNSVaFSPDGKLLASGSDDGTVRLWDL 317
WD40 COG2319
WD40 repeat [General function prediction only];
34-250 7.77e-15

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 74.56  E-value: 7.77e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  34 TELLVLKAHHDIVRFLV-QLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASAD 112
Cdd:COG2319   69 ALLATLLGHTAAVLSVAfSPDGRLLASASADGTVRLWDLATGLLLRTLTGHTGAVRSVAFSPD-------GKTLASGSAD 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174 113 RTVIVWDGDTTRQVQRISCFQSTVKCLTVL---QRLdvwLSGGND--LCVWNRKLDLLCKTSHLSDTGISALVEIPKNCV 187
Cdd:COG2319  142 GTVRLWDLATGKLLRTLTGHSGAVTSVAFSpdgKLL---ASGSDDgtVRLWDLATGKLLRTLTGHTGAVRSVAFSPDGKL 218

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767936174 188 VAAVGKELIIfRLvaptegsleWDI---LEVKRLLDHQDNILSL-INVNDLSFVTGSHVGELIIWDA 250
Cdd:COG2319  219 LASGSADGTV-RL---------WDLatgKLLRTLTGHSGSVRSVaFSPDGRLLASGSADGTVRLWDL 275
WD40 COG2319
WD40 repeat [General function prediction only];
35-159 3.78e-13

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 69.55  E-value: 3.78e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  35 ELLVLKAHHDIVRFLV-QLDDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPslesceeKNQLILTASADR 113
Cdd:COG2319  280 LLRTLTGHSGGVNSVAfSPDGKLLASGSDDGTVRLWDLATGKLLRTLTGHTGAVRSVAFSP-------DGKTLASGSDDG 352

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 767936174 114 TVIVWDGDTTRQVQRISCFQSTVKCLTVL---QRLdvwLSGGND--LCVWN 159
Cdd:COG2319  353 TVRLWDLATGELLRTLTGHTGAVTSVAFSpdgRTL---ASGSADgtVRLWD 400
WD40 COG2319
WD40 repeat [General function prediction only];
34-122 1.08e-11

WD40 repeat [General function prediction only];


Pssm-ID: 441893 [Multi-domain]  Cd Length: 403  Bit Score: 65.32  E-value: 1.08e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  34 TELLVLKAHHDIVRFLVQL-DDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIITFPSlesceekNQLILTASAD 112
Cdd:COG2319  321 KLLRTLTGHTGAVRSVAFSpDGKTLASGSDDGTVRLWDLATGELLRTLTGHTGAVTSVAFSPD-------GRTLASGSAD 393

                         90
                 ....*....|
gi 767936174 113 RTVIVWDGDT 122
Cdd:COG2319  394 GTVRLWDLAT 403
WD40 cd00200
WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions ...
 38-119 3.06e-08

WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.


Pssm-ID: 238121 [Multi-domain]  Cd Length: 289  Bit Score: 54.26  E-value: 3.06e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767936174  38 VLKAHHDIVRFLVQL-DDYRFASAGDDGIVVVWNAQTGEKLLELNGHTQKITAIitfpsleSCEEKNQLILTASADRTVI 116
Cdd:cd00200  214 TLRGHENGVNSVAFSpDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL-------AWSPDGKRLASGSADGTIR 286


                 ...
gi 767936174 117 VWD 119
Cdd:cd00200  287 IWD 289
WD40 smart00320
WD40 repeats; Note that these repeats are permuted with respect to the structural repeats ...
 73-119 1.06e-04

WD40 repeats; Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.


Pssm-ID: 197651 [Multi-domain]  Cd Length: 40  Bit Score: 39.22  E-value: 1.06e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*..
gi 767936174    73 TGEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVIVWD 119
Cdd:smart00320   1 SGELLKTLKGHTGPVTSVAFSPD-------GKYLASGSDDGTIKLWD 40
WD40 pfam00400
WD domain, G-beta repeat;
74-119 1.00e-03

WD domain, G-beta repeat;


Pssm-ID: 459801 [Multi-domain]  Cd Length: 39  Bit Score: 36.17  E-value: 1.00e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 767936174   74 GEKLLELNGHTQKITAIITFPSlesceekNQLILTASADRTVIVWD 119
Cdd:pfam00400   1 GKLLKTLEGHTGSVTSLAFSPD-------GKLLASGSDDGTVKVWD 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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