|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
908-1013 |
1.25e-53 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. :
Pssm-ID: 460201 Cd Length: 110 Bit Score: 182.41 E-value: 1.25e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 908 FLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQrNDRSYWLAS 987
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 767916578 988 AA-----PLPMMPLSEEAIRPYVSRCAVCEA 1013
Cdd:pfam01413 80 VEeqfrkPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1016-1128 |
1.02e-49 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome. :
Pssm-ID: 460201 Cd Length: 110 Bit Score: 171.24 E-value: 1.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 1016 QAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTgAGDQGGGQALMSPGSCLEDFRAAPFLECQGRqGTCHFFANKYSFWLT 1095
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGN-GTCNYASNDYSYWLS 78
|
90 100 110
....*....|....*....|....*....|...
gi 767916578 1096 TVkaDLQFSSaPAPDTLKESQAQRQKISRCQVC 1128
Cdd:pfam01413 79 TV--EEQFRK-PMSQTPKAGNELRSYISRCVVC 108
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
231-453 |
7.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats. The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 231 GCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGM 310
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 311 KGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGfPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRG 390
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD-PGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767916578 391 LRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPG 453
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-317 |
1.22e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats. The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 80.72 E-value: 1.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 35 GEKGDPGPPGdhedatpGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKGDTiscnvty 114
Cdd:NF038329 117 GEKGEPGPAG-------PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA------- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 115 pgrhgppgfdgppgpkgfpgpqgapglsGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 194
Cdd:NF038329 183 ----------------------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 195 NGQKGIPGDPafGHLGPPGKRGLsgvPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGfpgvpgppghscERGA 274
Cdd:NF038329 235 QGPDGDPGPT--GEDGPQGPDGP---AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG------------KDGL 297
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767916578 275 PGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLP 317
Cdd:NF038329 298 PGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
441-661 |
7.91e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats. The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 7.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 441 GRRGEPGRYGPPGfHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPa 520
Cdd:NF038329 117 GEKGEPGPAGPAG-PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ- 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 521 shfgppgpkgepGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDhGMPGLRGQPGEMGDPGPRGLQGD 600
Cdd:NF038329 195 ------------GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-GDPGPTGEDGPQGPDGPAGKDGP 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767916578 601 PGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPP-GPVGIPGLKGERGDPGSPG 661
Cdd:NF038329 262 RGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKdGQNGKDGLPGKDGKDGQPG 323
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
760-880 |
9.76e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats. The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.05 E-value: 9.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 760 DGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRipGLPGAPGMRGPEGAMGLP 839
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD--GDPGPTGEDGPQGPDGPA 256
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 767916578 840 GMRGPSGPgcKGEPGLDGRRGVDGVPGSPGPPGRKGDTGED 880
Cdd:NF038329 257 GKDGPRGD--RGEAGPDGPDGKDGERGPVGPAGKDGQNGKD 295
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
908-1013 |
1.25e-53 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 182.41 E-value: 1.25e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 908 FLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQrNDRSYWLAS 987
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 767916578 988 AA-----PLPMMPLSEEAIRPYVSRCAVCEA 1013
Cdd:pfam01413 80 VEeqfrkPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1016-1128 |
1.02e-49 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 171.24 E-value: 1.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 1016 QAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTgAGDQGGGQALMSPGSCLEDFRAAPFLECQGRqGTCHFFANKYSFWLT 1095
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGN-GTCNYASNDYSYWLS 78
|
90 100 110
....*....|....*....|....*....|...
gi 767916578 1096 TVkaDLQFSSaPAPDTLKESQAQRQKISRCQVC 1128
Cdd:pfam01413 79 TV--EEQFRK-PMSQTPKAGNELRSYISRCVVC 108
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
907-1014 |
1.43e-45 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 159.48 E-value: 1.43e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 907 GFLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLA 986
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 767916578 987 S-------AAPLPMMPLSEEaIRPYVSRCAVCEAP 1014
Cdd:smart00111 81 TiepsdqfTAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1015-1130 |
6.19e-42 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 149.08 E-value: 6.19e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 1015 AQAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTGAGDQGGGQaLMSPGSCLEDFRAAPFLECQGRqGTCHFFANK-YSFW 1093
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQD-LGSPGSCLERFRTMPFIECNGR-GVCNYASRNdYSFW 78
|
90 100 110
....*....|....*....|....*....|....*..
gi 767916578 1094 LTTVKADLQFsSAPAPDTLKESQAqRQKISRCQVCVK 1130
Cdd:smart00111 79 LSTIEPSDQF-TAPRPMTPKAGDL-RPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
231-453 |
7.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 231 GCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGM 310
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 311 KGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGfPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRG 390
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD-PGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767916578 391 LRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPG 453
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-317 |
1.22e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 80.72 E-value: 1.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 35 GEKGDPGPPGdhedatpGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKGDTiscnvty 114
Cdd:NF038329 117 GEKGEPGPAG-------PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA------- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 115 pgrhgppgfdgppgpkgfpgpqgapglsGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 194
Cdd:NF038329 183 ----------------------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 195 NGQKGIPGDPafGHLGPPGKRGLsgvPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGfpgvpgppghscERGA 274
Cdd:NF038329 235 QGPDGDPGPT--GEDGPQGPDGP---AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG------------KDGL 297
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767916578 275 PGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLP 317
Cdd:NF038329 298 PGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
82-321 |
1.67e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 80.33 E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 82 ERGHPGVPGHPGVRGPDGLKGQKGDTiscnvtypgrhgppgfdgppGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPG 161
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGET--------------------GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 162 PPGFRGDMGDPGFGGEkgsspvgppgppgspgvNGQKGIPG-DPAFGHLGPPGKRGLSGVPGIKGPRGDPGcPGAEGPAG 240
Cdd:NF038329 178 KDGEAGAKGPAGEKGP-----------------QGPRGETGpAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 241 IPGFLGLKGPKGREGHAGFPGVPGppghscERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRP 320
Cdd:NF038329 240 DPGPTGEDGPQGPDGPAGKDGPRG------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313
|
.
gi 767916578 321 G 321
Cdd:NF038329 314 G 314
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
441-661 |
7.91e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 7.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 441 GRRGEPGRYGPPGfHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPa 520
Cdd:NF038329 117 GEKGEPGPAGPAG-PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ- 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 521 shfgppgpkgepGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDhGMPGLRGQPGEMGDPGPRGLQGD 600
Cdd:NF038329 195 ------------GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-GDPGPTGEDGPQGPDGPAGKDGP 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767916578 601 PGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPP-GPVGIPGLKGERGDPGSPG 661
Cdd:NF038329 262 RGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKdGQNGKDGLPGKDGKDGQPG 323
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
271-322 |
4.29e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.79 E-value: 4.29e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 767916578 271 ERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGA 322
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGA 53
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
760-880 |
9.76e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.05 E-value: 9.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 760 DGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRipGLPGAPGMRGPEGAMGLP 839
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD--GDPGPTGEDGPQGPDGPA 256
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 767916578 840 GMRGPSGPgcKGEPGLDGRRGVDGVPGSPGPPGRKGDTGED 880
Cdd:NF038329 257 GKDGPRGD--RGEAGPDGPDGKDGERGPVGPAGKDGQNGKD 295
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
7-249 |
1.14e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.05 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 7 KGHKGERGPDGPPgfpgqpgshGRDGHAGEKGDPGPPGDhedatpggkgfpgplgppgkagpvgppglgfpgpPGERGHP 86
Cdd:NF038329 164 AGPQGEAGPQGPA---------GKDGEAGAKGPAGEKGP----------------------------------QGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 87 GVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFR 166
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGER 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 167 GDMGDPGFGGEkgsspvgppgppgspgvNGQKGIPgdpafghlGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLG 246
Cdd:NF038329 281 GPVGPAGKDGQ-----------------NGKDGLP--------GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
...
gi 767916578 247 LKG 249
Cdd:NF038329 336 QPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
576-860 |
1.76e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 45.28 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 576 DHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGlhdvgppgPVGIPGLKGERG 655
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAG--------PQGPAGKDGEAG 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 656 DPGSPGisppgprgkkgppgppgSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGD 735
Cdd:NF038329 184 AKGPAG-----------------EKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 736 CGLPGPpgppgppgppgykgfpgcDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPgprgepgppadvd 815
Cdd:NF038329 247 DGPQGP------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD------------- 295
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767916578 816 dcpripGLPGAPGMRGPEGAMGLPGMRGPSG-PGCKGEPGLDGRRG 860
Cdd:NF038329 296 ------GLPGKDGKDGQNGKDGLPGKDGKDGqPGKDGLPGKDGKDG 335
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
210-405 |
1.06e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 210 GPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGS 289
Cdd:COG5164 10 GPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQNQGG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 290 PGAP---GGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPG 366
Cdd:COG5164 90 TRPAgntGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGSTTPPG 169
|
170 180 190
....*....|....*....|....*....|....*....
gi 767916578 367 AEGCPGAKGEPGEKGmSGLPGDRGLRGAKGAIGPPGDEG 405
Cdd:COG5164 170 PGGSTTPPDDGGSTT-PPNKGETGTDIPTGGTPRQGPDG 207
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
908-1013 |
1.25e-53 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 182.41 E-value: 1.25e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 908 FLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQrNDRSYWLAS 987
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGNGTCNYAS-NDYSYWLST 79
|
90 100 110
....*....|....*....|....*....|.
gi 767916578 988 AA-----PLPMMPLSEEAIRPYVSRCAVCEA 1013
Cdd:pfam01413 80 VEeqfrkPMSQTPKAGNELRSYISRCVVCEA 110
|
|
| C4 |
pfam01413 |
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of ... |
1016-1128 |
1.02e-49 |
|
C-terminal tandem repeated domain in type 4 procollagen; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 460201 Cd Length: 110 Bit Score: 171.24 E-value: 1.02e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 1016 QAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTgAGDQGGGQALMSPGSCLEDFRAAPFLECQGRqGTCHFFANKYSFWLT 1095
Cdd:pfam01413 1 FLIAVHSQTTQIPDCPPGWTSLWTGYSLLMHT-GNGEGHGQDLGSPGSCLERFRTMPFIECNGN-GTCNYASNDYSYWLS 78
|
90 100 110
....*....|....*....|....*....|...
gi 767916578 1096 TVkaDLQFSSaPAPDTLKESQAQRQKISRCQVC 1128
Cdd:pfam01413 79 TV--EEQFRK-PMSQTPKAGNELRSYISRCVVC 108
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
907-1014 |
1.43e-45 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 159.48 E-value: 1.43e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 907 GFLLVLHSQTDQEPTCPLGMPRLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLA 986
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQDLGSPGSCLERFRTMPFIECNGRGVCNYASRNDYSFWLS 80
|
90 100 110
....*....|....*....|....*....|....*
gi 767916578 987 S-------AAPLPMMPLSEEaIRPYVSRCAVCEAP 1014
Cdd:smart00111 81 TiepsdqfTAPRPMTPKAGD-LRPYISRCQVCEKP 114
|
|
| C4 |
smart00111 |
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of ... |
1015-1130 |
6.19e-42 |
|
C-terminal tandem repeated domain in type 4 procollagens; Duplicated domain in C-terminus of type 4 collagens. Mutations in alpha-5 collagen IV are associated with X-linked Alport syndrome.
Pssm-ID: 128421 Cd Length: 114 Bit Score: 149.08 E-value: 6.19e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 1015 AQAVAVHSQDQSIPPCPQTWRSLWIGYSFLMHTGAGDQGGGQaLMSPGSCLEDFRAAPFLECQGRqGTCHFFANK-YSFW 1093
Cdd:smart00111 1 GFVIAVHSQTTNVPQCPAGWVELWTGYSFLMHTGNGEGHGQD-LGSPGSCLERFRTMPFIECNGR-GVCNYASRNdYSFW 78
|
90 100 110
....*....|....*....|....*....|....*..
gi 767916578 1094 LTTVKADLQFsSAPAPDTLKESQAqRQKISRCQVCVK 1130
Cdd:smart00111 79 LSTIEPSDQF-TAPRPMTPKAGDL-RPYISRCQVCEK 113
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
231-453 |
7.33e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 90.73 E-value: 7.33e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 231 GCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGM 310
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 311 KGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGfPGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRG 390
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD-PGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDG 275
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767916578 391 LRGAKGAIGPPGDEGEMAIISQKGTPGEPGPPGDDGFPGERGDKGTPGMQGRRGEPGRYGPPG 453
Cdd:NF038329 276 KDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
35-317 |
1.22e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 80.72 E-value: 1.22e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 35 GEKGDPGPPGdhedatpGGKGFPGPLGPPGKAGPVGPPGLGFPGPPGERGHPGVPGHPGVRGPDGLKGQKGDTiscnvty 114
Cdd:NF038329 117 GEKGEPGPAG-------PAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA------- 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 115 pgrhgppgfdgppgpkgfpgpqgapglsGSDGHKGRPGTPGTAEIPGPPGFRGDMGDPGFGGEKGSSPVGPPGPPGSPGV 194
Cdd:NF038329 183 ----------------------------GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 195 NGQKGIPGDPafGHLGPPGKRGLsgvPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGfpgvpgppghscERGA 274
Cdd:NF038329 235 QGPDGDPGPT--GEDGPQGPDGP---AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG------------KDGL 297
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 767916578 275 PGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLP 317
Cdd:NF038329 298 PGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
82-321 |
1.67e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 80.33 E-value: 1.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 82 ERGHPGVPGHPGVRGPDGLKGQKGDTiscnvtypgrhgppgfdgppGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPG 161
Cdd:NF038329 118 EKGEPGPAGPAGPAGEQGPRGDRGET--------------------GPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAG 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 162 PPGFRGDMGDPGFGGEkgsspvgppgppgspgvNGQKGIPG-DPAFGHLGPPGKRGLSGVPGIKGPRGDPGcPGAEGPAG 240
Cdd:NF038329 178 KDGEAGAKGPAGEKGP-----------------QGPRGETGpAGEQGPAGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDG 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 241 IPGFLGLKGPKGREGHAGFPGVPGppghscERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRP 320
Cdd:NF038329 240 DPGPTGEDGPQGPDGPAGKDGPRG------DRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLP 313
|
.
gi 767916578 321 G 321
Cdd:NF038329 314 G 314
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
441-661 |
7.91e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.07 E-value: 7.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 441 GRRGEPGRYGPPGfHRGEPGEKGQPGPPGPPGPPGSTGLRGFIGFPGLPGDQGEPGSPGPPGFSGIDGARGPKGNKGDPa 520
Cdd:NF038329 117 GEKGEPGPAGPAG-PAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQ- 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 521 shfgppgpkgepGSPGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPPGCPGDhGMPGLRGQPGEMGDPGPRGLQGD 600
Cdd:NF038329 195 ------------GPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-GDPGPTGEDGPQGPDGPAGKDGP 261
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767916578 601 PGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPP-GPVGIPGLKGERGDPGSPG 661
Cdd:NF038329 262 RGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKdGQNGKDGLPGKDGKDGQPG 323
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
271-322 |
4.29e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 44.79 E-value: 4.29e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 767916578 271 ERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGA 322
Cdd:pfam01391 2 PPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGA 53
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
273-322 |
5.20e-05 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 42.10 E-value: 5.20e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 767916578 273 GAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLPGLPGRPGA 322
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGA 50
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
760-880 |
9.76e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.05 E-value: 9.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 760 DGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPGPPADVDDCPRipGLPGAPGMRGPEGAMGLP 839
Cdd:NF038329 179 DGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD--GDPGPTGEDGPQGPDGPA 256
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 767916578 840 GMRGPSGPgcKGEPGLDGRRGVDGVPGSPGPPGRKGDTGED 880
Cdd:NF038329 257 GKDGPRGD--RGEAGPDGPDGKDGERGPVGPAGKDGQNGKD 295
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
7-249 |
1.14e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.05 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 7 KGHKGERGPDGPPgfpgqpgshGRDGHAGEKGDPGPPGDhedatpggkgfpgplgppgkagpvgppglgfpgpPGERGHP 86
Cdd:NF038329 164 AGPQGEAGPQGPA---------GKDGEAGAKGPAGEKGP----------------------------------QGPRGET 200
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 87 GVPGHPGVRGPDGLKGQKGDTISCNVTYPGRHGPPGFDGPPGPKGFPGPQGAPGLSGSDGHKGRPGTPGTAEIPGPPGFR 166
Cdd:NF038329 201 GPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGER 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 167 GDMGDPGFGGEkgsspvgppgppgspgvNGQKGIPgdpafghlGPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLG 246
Cdd:NF038329 281 GPVGPAGKDGQ-----------------NGKDGLP--------GKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
...
gi 767916578 247 LKG 249
Cdd:NF038329 336 QPG 338
|
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| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
576-860 |
1.76e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 45.28 E-value: 1.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 576 DHGMPGLRGQPGEMGDPGPRGLQGDPGIPGPPGIKGPSGSPGLNGLHGLKGQKGTKGASGlhdvgppgPVGIPGLKGERG 655
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAG--------PQGPAGKDGEAG 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 656 DPGSPGisppgprgkkgppgppgSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPGD 735
Cdd:NF038329 184 AKGPAG-----------------EKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGE 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 736 CGLPGPpgppgppgppgykgfpgcDGKDGQKGPVGFPGPQGPHGFPGPPGEKGLPGPPGRKGPTGLPgprgepgppadvd 815
Cdd:NF038329 247 DGPQGP------------------DGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKD------------- 295
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 767916578 816 dcpripGLPGAPGMRGPEGAMGLPGMRGPSG-PGCKGEPGLDGRRG 860
Cdd:NF038329 296 ------GLPGKDGKDGQNGKDGLPGKDGKDGqPGKDGLPGKDGKDG 335
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| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
210-405 |
1.06e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 43.09 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 210 GPPGKRGLSGVPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGHSCERGAPGIPGQPGLPGYPGS 289
Cdd:COG5164 10 GPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQNQGG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767916578 290 PGAP---GGKGQPGDVGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPG 366
Cdd:COG5164 90 TRPAgntGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDGGSTTPPG 169
|
170 180 190
....*....|....*....|....*....|....*....
gi 767916578 367 AEGCPGAKGEPGEKGmSGLPGDRGLRGAKGAIGPPGDEG 405
Cdd:COG5164 170 PGGSTTPPDDGGSTT-PPNKGETGTDIPTGGTPRQGPDG 207
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| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
271-314 |
2.44e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.09 E-value: 2.44e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 767916578 271 ERGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPAGMKGLP 314
Cdd:pfam01391 14 PPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
356-402 |
5.80e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.32 E-value: 5.80e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 767916578 356 PGFPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPG 402
Cdd:pfam01391 9 PGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
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