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Conserved domains on  [gi|755552150|ref|XP_011244037|]
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RNA polymerase II-associated protein 3 isoform X2 [Mus musculus]

Protein Classification

RPAP3_C domain-containing protein( domain architecture ID 13326683)

RPAP3_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 381-471 2.70e-34

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


:

Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.93  E-value: 2.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  381 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 460
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 755552150  461 MAVMFMSGPER 471
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
4-247 4.74e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 4.74e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelr 83
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  84 kinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPAN 163
Cdd:COG0457   81 ---------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 164 RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 243
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                 ....
gi 755552150 244 HWDD 247
Cdd:COG0457  196 LLAL 199
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 381-471 2.70e-34

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.93  E-value: 2.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  381 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 460
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 755552150  461 MAVMFMSGPER 471
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
4-247 4.74e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 4.74e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelr 83
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  84 kinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPAN 163
Cdd:COG0457   81 ---------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 164 RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 243
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                 ....
gi 755552150 244 HWDD 247
Cdd:COG0457  196 LLAL 199
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 135-270 8.76e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.43  E-value: 8.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 135 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 214
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 215 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 270
Cdd:PLN03088  93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 118-241 3.45e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 62.31  E-value: 3.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  118 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAdRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 197
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 755552150  198 RGTARTFLGKINEAKQDFeTVLLLEPG--NKQAATELSRIKKELIE 241
Cdd:TIGR00990 200 RANAYDGLGKYADALLDL-TASCIIDGfrNEQSAQAVERLLKKFAE 244
TPR_1 pfam00515
Tetratricopeptide repeat;
43-75 3.77e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 3.77e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 755552150   43 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 75
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 43-75 7.46e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.74  E-value: 7.46e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 755552150    43 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 75
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
RPAP3_C pfam13877
Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of ...
 381-471 2.70e-34

Potential Monad-binding region of RPAP3; This domain is found at the C-terminus of RNA-polymerase II-associated proteins. These proteins bind to Monad and are involved in regulating apoptosis. They contain TPR-repeats towards the N_terminus.


Pssm-ID: 464012  Cd Length: 91  Bit Score: 123.93  E-value: 2.70e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  381 PANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFD 460
Cdd:pfam13877   1 PRNAYEFERDWRRLRKSSDRLYLYLKSIPPSNLPKIFKNSLDPDLLGEILKALAEHFIENEDPALVLEILQGLSKVPRFD 80

                          90
                  ....*....|.
gi 755552150  461 MAVMFMSGPER 471
Cdd:pfam13877  81 LAVMFLSKAEK 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
4-247 4.74e-24

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 100.85  E-value: 4.74e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelr 83
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN--- 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  84 kinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPAN 163
Cdd:COG0457   81 ---------------------------------------------NLGLALQALGRYEEALEDYDKALELDPDDAEALYN 115

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 164 RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKELIEKG 243
Cdd:COG0457  116 LGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEV 195


                 ....
gi 755552150 244 HWDD 247
Cdd:COG0457  196 LLAL 199
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-239 7.91e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 7.91e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  35 IALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskp 114
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALY---------------------------------- 46

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 115 tggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKA 194
Cdd:COG0457   47 --------------NLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEA 112

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 755552150 195 FARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 239
Cdd:COG0457  113 LYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 14-229 2.24e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 2.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  14 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltske 93
Cdd:COG3914   84 AALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYL------------- 150

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  94 nsgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 173
Cdd:COG3914  151 -----------------------------------NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGR 195

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 755552150 174 YEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAA 229
Cdd:COG3914  196 LEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELS 251
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 2-225 5.71e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 68.99  E-value: 5.71e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   2 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNE 81
Cdd:COG2956   36 ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRL 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  82 LRKI-------NQALTSKEnsgpgaaaaaeskpaageskpTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAD 154
Cdd:COG2956  116 LAEIyeqegdwEKAIEVLE---------------------RLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755552150 155 RTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGN 225
Cdd:COG2956  175 PDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSD 245
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
44-223 7.85e-13

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 67.63  E-value: 7.85e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  44 AYARRGAARFALQKLEDARKDYEkvlelepDNFEATNELRKINQALTSkENSGPGAAAAAESKPAAGESKPTGGQQGRQK 123
Cdd:COG4785    1 LYALALALLLALALAAAAASKAA-------ILLAALLFAAVLALAIAL-ADLALALAAAALAAAALAAERIDRALALPDL 72

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 124 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 203
Cdd:COG4785   73 AQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALY 152

                        170       180
                 ....*....|....*....|
gi 755552150 204 FLGKINEAKQDFETVLLLEP 223
Cdd:COG4785  153 YLGRYELAIADLEKALELDP 172
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 135-270 8.76e-13

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 69.43  E-value: 8.76e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 135 FKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQD 214
Cdd:PLN03088  13 FVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA 92

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 215 FETVLLLEPGNKQAATELS----RIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSP 270
Cdd:PLN03088  93 LEKGASLAPGDSRFTKLIKecdeKIAEEEKDLVQPVPSDLPSSVTAPPVEEADATPVVPP 152
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 44-225 7.45e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.90  E-value: 7.45e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  44 AYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqk 123
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEI-------------------------------------- 47

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 124 aiaekdlgngFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTART 203
Cdd:COG4783   48 ----------LLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117

                        170       180
                 ....*....|....*....|..
gi 755552150 204 FLGKINEAKQDFETVLLLEPGN 225
Cdd:COG4783  118 ALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 122-239 1.49e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 62.13  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 122 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 201
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 755552150 202 RTFLGKINEAKQDFETVLLLEPGNKQAATELSRIKKEL 239
Cdd:COG4783   82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRAL 119
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 118-247 2.02e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.17  E-value: 2.02e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 118 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 197
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLN 151

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 755552150 198 RGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 247
Cdd:COG3914  152 LGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA---LQDLGRLEE 198
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-248 2.23e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.17  E-value: 2.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  43 KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNelrkinqaltskensgpgaaaaaeskpaageskptggqqgrq 122
Cdd:COG3914   79 ALLELAALLLQALGRYEEALALYRRALALNPDNAEALF------------------------------------------ 116

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 123 kaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTAR 202
Cdd:COG3914  117 ------NLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNAL 190

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 755552150 203 TFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDDV 248
Cdd:COG3914  191 QDLGRLEEAIAAYRRALELDPDNADAHSNLLFA---LRQACDWEVY 233
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 130-237 5.85e-11

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 60.02  E-value: 5.85e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 130 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 209
Cdd:COG4235   23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102

                         90       100
                 ....*....|....*....|....*...
gi 755552150 210 EAKQDFETVLLLEPGNKQAATELSRIKK 237
Cdd:COG4235  103 EAIAAWQKLLALLPADAPARLLEASIAE 130
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 122-223 1.03e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 59.97  E-value: 1.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 122 QKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTA 201
Cdd:COG5010   52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAAL 131

                         90       100
                 ....*....|....*....|..
gi 755552150 202 RTFLGKINEAKQDFETVLLLEP 223
Cdd:COG5010  132 LLSLGQDDEAKAALQRALGTSP 153
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 14-188 1.39e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 59.05  E-value: 1.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  14 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEAtnelrkinqaltske 93
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA--------------- 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  94 nsgpgaaaaaeskpaageskptggqqgrqkaiaEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQR 173
Cdd:COG4783   75 ---------------------------------RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                        170
                 ....*....|....*
gi 755552150 174 YEEAERDCTQAIVLD 188
Cdd:COG4783  122 PDEAIAALEKALELD 136
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 118-241 3.45e-10

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 62.31  E-value: 3.45e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  118 QQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAAdRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFAR 197
Cdd:TIGR00990 121 EERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC-KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNR 199

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 755552150  198 RGTARTFLGKINEAKQDFeTVLLLEPG--NKQAATELSRIKKELIE 241
Cdd:TIGR00990 200 RANAYDGLGKYADALLDL-TASCIIDGfrNEQSAQAVERLLKKFAE 244
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
7-188 9.02e-10

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 58.77  E-value: 9.02e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   7 NPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYT------KAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG4785   32 AAVLALAIALADLALALAAAALAAAALAAERIDRALalpdlaQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYN 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  81 elrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALL 160
Cdd:COG4785  112 ------------------------------------------------NRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143

                        170       180
                 ....*....|....*....|....*...
gi 755552150 161 PANRAMAYLKIQRYEEAERDCTQAIVLD 188
Cdd:COG4785  144 YLNRGIALYYLGRYELAIADLEKALELD 171
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 1-179 1.16e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 60.78  E-value: 1.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG3914  105 LALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  81 ElrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdLGNGFFKEGKYEQAIECYTRGIAADRTNALL 160
Cdd:COG3914  185 N------------------------------------------------LGNALQDLGRLEEAIAAYRRALELDPDNADA 216

                        170
                 ....*....|....*....
gi 755552150 161 PANRAMAYLKIQRYEEAER 179
Cdd:COG3914  217 HSNLLFALRQACDWEVYDR 235
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 1-97 2.19e-09

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 59.03  E-value: 2.19e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:PLN03088  29 IDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTK 108

                         90
                 ....*....|....*..
gi 755552150  81 ELRKINQALTSKENSGP 97
Cdd:PLN03088 109 LIKECDEKIAEEEKDLV 125
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-89 2.74e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 2.74e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG0457   69 LELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148


                 ....*....
gi 755552150  81 ELRKINQAL 89
Cdd:COG0457  149 NLGIALEKL 157
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
4-78 3.54e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.85  E-value: 3.54e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEA 78
Cdd:COG4785  103 DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPER 177
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 130-246 4.81e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.43  E-value: 4.81e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 130 LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKIN 209
Cdd:COG2956   48 LGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWE 127

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 755552150 210 EAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWD 246
Cdd:COG2956  128 KAIEVLERLLKLGPENAHAYCELAEL---YLEQGDYD 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 142-247 5.16e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 5.16e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 142 QAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLL 221
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100
                 ....*....|....*....|....*.
gi 755552150 222 EPGNKQAATELSRIkkeLIEKGHWDD 247
Cdd:COG4235   81 DPDNPEALYLLGLA---AFQQGDYAE 103
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
134-223 5.26e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 5.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 134 FFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERdCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQ 213
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80

                         90
                 ....*....|
gi 755552150 214 DFETVLLLEP 223
Cdd:COG3063   81 YLERALELDP 90
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
152-228 8.91e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 8.91e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755552150 152 AADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 228
Cdd:COG4785   67 LALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 1-219 2.79e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 2.79e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG2956  103 LELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALL 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  81 ELRKInqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdlgngFFKEGKYEQAIECYTRGIAADRTNALL 160
Cdd:COG2956  183 LLAEL------------------------------------------------YLEQGDYEEAIAALERALEQDPDYLPA 214

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755552150 161 PANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFArrgtartfLGKINEAKQDFETVL 219
Cdd:COG2956  215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLA--------LADLLERKEGLEAAL 265
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 48-247 3.86e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 51.65  E-value: 3.86e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  48 RGAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQALtskensgpgaaaaaeskpaageskptgGQQGR-----Q 122
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRR---------------------------GEYDRairihQ 66

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 123 KAIAEKD--------LGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKA 194
Cdd:COG2956   67 KLLERDPdraealleLAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHA 146

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755552150 195 FARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIkkeLIEKGHWDD 247
Cdd:COG2956  147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL---YLEQGDYEE 196
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-75 1.81e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.49  E-value: 1.81e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDN 75
Cdd:COG4783   65 LELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 1-89 2.28e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG4783   31 LELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYL 110


                 ....*....
gi 755552150  81 ELRKINQAL 89
Cdd:COG4783  111 RLARAYRAL 119
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 4-73 2.87e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 2.87e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEP 73
Cdd:COG5010   84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 4-88 3.20e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 3.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   4 DPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELR 83
Cdd:COG4235   47 DPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEA 126


                 ....*
gi 755552150  84 KINQA 88
Cdd:COG4235  127 SIAEA 131
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 3-78 3.77e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 3.77e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755552150   3 ADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEA 78
Cdd:COG4235   12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA 87
TPR_1 pfam00515
Tetratricopeptide repeat;
43-75 3.77e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.56  E-value: 3.77e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 755552150   43 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 75
Cdd:pfam00515   2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 14-241 5.19e-06

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 49.21  E-value: 5.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   14 RASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNELrkinQALTSKE 93
Cdd:TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQL----GVTQYKE 446

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   94 NSgpgaaaaaeskpaaGESKPTGGQQGRQKAIAEKDLGNgFFKE-----GKYEQAIECYTRGIAADR------TNALLPA 162
Cdd:TIGR00990 447 GS--------------IASSMATFRRCKKNFPEAPDVYN-YYGEllldqNKFDEAIEKFDTAIELEKetkpmyMNVLPLI 511

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  163 NRAMAYLK-IQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETvlllepgnkqaATELSRIKKELIE 241
Cdd:TIGR00990 512 NKALALFQwKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFER-----------AAELARTEGELVQ 580
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 149-235 5.59e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 5.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 149 RGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 228
Cdd:COG5010   45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA 124


                 ....*..
gi 755552150 229 ATELSRI 235
Cdd:COG5010  125 YSNLAAL 131
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 2-188 6.09e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 6.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   2 DADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATNe 81
Cdd:COG5010   14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYY- 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  82 lrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekDLGNGFFKEGKYEQAIECYTRGIAADRTNALLP 161
Cdd:COG5010   93 -----------------------------------------------NLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125

                        170       180
                 ....*....|....*....|....*..
gi 755552150 162 ANRAMAYLKIQRYEEAERDCTQAIVLD 188
Cdd:COG5010  126 SNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
17-89 1.11e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 1.11e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755552150  17 AYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKdYEKVLELEPDNFEATNELRKINQAL 89
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-228 1.25e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 48.16  E-value: 1.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150    1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALL 299

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   81 ELRKINQALTSKENSgpgaaaaaeskpaageskptGGQQGRQKAIAEKD------LGNGFFKEGKYEQAIECYTRGIAAD 154
Cdd:TIGR02917 300 LAGASEYQLGNLEQA--------------------YQYLNQILKYAPNShqarrlLASIQLRLGRVDEAIATLSPALGLD 359

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755552150  155 RTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQA 228
Cdd:TIGR02917 360 PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
1-74 2.00e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.24  E-value: 2.00e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAEsDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPD 74
Cdd:COG3063   19 LELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 9-236 2.19e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.39  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150    9 VLPTNRASAYFRLKKFAVAESdcNLAIALSRTYTKAYARRGAARFALQ--KLEDARKDYEKVLELEPDNFEATNELRKIN 86
Cdd:TIGR02917 126 ELLALRGLAYLGLGQLELAQK--SYEQALAIDPRSLYAKLGLAQLALAenRFDEARALIDEVLTADPGNVDALLLKGDLL 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   87 QALtskensgpgaaaaaeskpaageSKPTGGQQGRQKAIAEK--------DLGNGFFKEGKYEQAiECYTRGIAADRTNA 158
Cdd:TIGR02917 204 LSL----------------------GNIELALAAYRKAIALRpnniavllALATILIEAGEFEEA-EKHADALLKKAPNS 260

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755552150  159 LLPAN-RAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATELSRIK 236
Cdd:TIGR02917 261 PLAHYlKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
167-239 5.10e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 5.10e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755552150 167 AYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQdFETVLLLEPGNKQAATELSRIKKEL 239
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 43-75 7.46e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.74  E-value: 7.46e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 755552150    43 KAYARRGAARFALQKLEDARKDYEKVLELEPDN 75
Cdd:smart00028   2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
1-90 8.20e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 8.20e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:COG0457  103 LELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAA 182

                         90
                 ....*....|
gi 755552150  81 ELRKINQALT 90
Cdd:COG0457  183 LGEAALALAA 192
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
51-190 2.00e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.54  E-value: 2.00e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  51 ARFALQKLEDARKDYEKVLELEPDNFEATNELrkinqaltskensgpgaaaaaeskpaageskptggqqgrqkaiaekdl 130
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNL------------------------------------------------ 32

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 131 GNGFFKEGKYEQAIEcYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGS 190
Cdd:COG3063   33 GLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
TPR_11 pfam13414
TPR repeat;
131-170 2.55e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 38.61  E-value: 2.55e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 755552150  131 GNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLK 170
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 124-157 3.29e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 3.29e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 755552150   124 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 157
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 1-236 3.91e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 3.91e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150    1 MDADPYNPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNFEATN 80
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAART 401

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   81 ELRkinqalTSKENSGpgaaaaaeskpaagesKPTGGQQGRQKAIA-EKDLGN-------GFFKEGKYEQAIECYTRGIA 152
Cdd:TIGR02917 402 QLG------ISKLSQG----------------DPSEAIADLETAAQlDPELGRadlllilSYLRSGQFDKALAAAKKLEK 459

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  153 ADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAATEL 232
Cdd:TIGR02917 460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILAL 539


                  ....
gi 755552150  233 SRIK 236
Cdd:TIGR02917 540 AGLY 543
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 43-74 4.07e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 4.07e-04
                          10        20        30
                  ....*....|....*....|....*....|..
gi 755552150   43 KAYARRGAARFALQKLEDARKDYEKVLELEPD 74
Cdd:pfam07719   2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 134-237 4.20e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 4.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150 134 FFKEGKYEQAIECYTRGIAADRTNALLPA---NRAMAYLKIQRYEEAERDCTQAIVLDGSYSK---AFARRGTARTFLGK 207
Cdd:COG1729    3 LLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 755552150 208 INEAKQDFETVLLLEPGNKQAATELSRIKK 237
Cdd:COG1729   83 YDKARATLEELIKKYPDSEAAKEARARLAR 112
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 34-188 4.33e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 4.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  34 AIALSRTYTKAYARRGAARFALQKLEDARKDYEKVLELEPDNfeatnelrkinqaltskensgpgaaaaaeskpaagesk 113
Cdd:COG4235    9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN-------------------------------------- 50

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755552150 114 ptggqqgrqkAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLD 188
Cdd:COG4235   51 ----------ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TPR_1 pfam00515
Tetratricopeptide repeat;
124-157 5.98e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 5.98e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 755552150  124 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTN 157
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
163-191 2.04e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.86  E-value: 2.04e-03
                          10        20
                  ....*....|....*....|....*....
gi 755552150  163 NRAMAYLKIQRYEEAERDCTQAIVLDGSY 191
Cdd:pfam00515   6 NLGNAYFKLGKYDEALEYYEKALELNPNN 34
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 7-225 2.05e-03

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 40.74  E-value: 2.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150    7 NPVLPTNRASAYFRLKKFAVAESDCNLAIALSRTYTKAYARRGAA----------------------------------- 51
Cdd:TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAydglgkyadalldltasciidgfrneqsaqaverl 238

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150   52 --RFALQKLEDARKDYEKVL---------------ELEPDNFEATNELRK------INQALTSKEN-SGPGAAAAAESKp 107
Cdd:TIGR00990 239 lkKFAESKAKEILETKPENLpsvtfvgnylqsfrpKPRPAGLEDSNELDEetgngqLQLGLKSPESkADESYEEAARAF- 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755552150  108 aagESKPTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVL 187
Cdd:TIGR00990 318 ---EKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL 394

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 755552150  188 DGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGN 225
Cdd:TIGR00990 395 NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432
TPR_11 pfam13414
TPR repeat;
49-89 3.98e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.14  E-value: 3.98e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 755552150   49 GAARFALQKLEDARKDYEKVLELEPDNFEATNELRKINQAL 89
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 163-191 9.51e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 9.51e-03
                           10        20
                   ....*....|....*....|....*....
gi 755552150   163 NRAMAYLKIQRYEEAERDCTQAIVLDGSY 191
Cdd:smart00028   6 NLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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