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Conserved domains on  [gi|578819589|ref|XP_006717968|]
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shieldin complex subunit 2 isoform X1 [Homo sapiens]

Protein Classification

FAM35_C domain-containing protein( domain architecture ID 11239284)

FAM35_C domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
FAM35_C pfam15793
Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the ...
768-940 2.52e-109

Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the function is not known.


:

Pssm-ID: 464873  Cd Length: 176  Bit Score: 334.68  E-value: 2.52e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  768 DKCSGVVLIKAQISELAFPITASQK--IALNAHSSLKSIFSSLP-NIVYTGCAKCGLELETDENRIYKQCFSCLPFTMKK 844
Cdd:pfam15793   1 QKYSGVVELKAQILELVFQITAAQKpqIALNAHTSLEGILSSLPgDITYTGCAKCGLELETDENGIYKPCYPCLPHTAVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  845 IYYRPALMTAIDGRHDVCIRVESKLIEKILLNISADCLNRVIVPSSEITYGMVVADLFHSLLAVSAEPCVLKIQSLFVLD 924
Cdd:pfam15793  81 RYYRPAVLTVVDGSHQVCVQVPPVLLQKILLNIPPDWLNRSVAPSSEVTYGMVAADLLHSLLALPRKPCVLTVRSHFVLD 160
                         170
                  ....*....|....*.
gi 578819589  925 ENSYPLQQDFSLLDFY 940
Cdd:pfam15793 161 ENSYPLQQDFSLLDFQ 176
 
Name Accession Description Interval E-value
FAM35_C pfam15793
Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the ...
768-940 2.52e-109

Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the function is not known.


Pssm-ID: 464873  Cd Length: 176  Bit Score: 334.68  E-value: 2.52e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  768 DKCSGVVLIKAQISELAFPITASQK--IALNAHSSLKSIFSSLP-NIVYTGCAKCGLELETDENRIYKQCFSCLPFTMKK 844
Cdd:pfam15793   1 QKYSGVVELKAQILELVFQITAAQKpqIALNAHTSLEGILSSLPgDITYTGCAKCGLELETDENGIYKPCYPCLPHTAVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  845 IYYRPALMTAIDGRHDVCIRVESKLIEKILLNISADCLNRVIVPSSEITYGMVVADLFHSLLAVSAEPCVLKIQSLFVLD 924
Cdd:pfam15793  81 RYYRPAVLTVVDGSHQVCVQVPPVLLQKILLNIPPDWLNRSVAPSSEVTYGMVAADLLHSLLALPRKPCVLTVRSHFVLD 160
                         170
                  ....*....|....*.
gi 578819589  925 ENSYPLQQDFSLLDFY 940
Cdd:pfam15793 161 ENSYPLQQDFSLLDFQ 176
 
Name Accession Description Interval E-value
FAM35_C pfam15793
Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the ...
768-940 2.52e-109

Protein family FAM35, C-terminal; FAM35_C is a family of proteins found in eukaryotes. the function is not known.


Pssm-ID: 464873  Cd Length: 176  Bit Score: 334.68  E-value: 2.52e-109
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  768 DKCSGVVLIKAQISELAFPITASQK--IALNAHSSLKSIFSSLP-NIVYTGCAKCGLELETDENRIYKQCFSCLPFTMKK 844
Cdd:pfam15793   1 QKYSGVVELKAQILELVFQITAAQKpqIALNAHTSLEGILSSLPgDITYTGCAKCGLELETDENGIYKPCYPCLPHTAVK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578819589  845 IYYRPALMTAIDGRHDVCIRVESKLIEKILLNISADCLNRVIVPSSEITYGMVVADLFHSLLAVSAEPCVLKIQSLFVLD 924
Cdd:pfam15793  81 RYYRPAVLTVVDGSHQVCVQVPPVLLQKILLNIPPDWLNRSVAPSSEVTYGMVAADLLHSLLALPRKPCVLTVRSHFVLD 160
                         170
                  ....*....|....*.
gi 578819589  925 ENSYPLQQDFSLLDFY 940
Cdd:pfam15793 161 ENSYPLQQDFSLLDFQ 176
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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