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Conserved domains on  [gi|568927603|ref|XP_006538425|]
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ubiquitin carboxyl-terminal hydrolase 45 isoform X2 [Mus musculus]

Protein Classification

zf-UBP and Peptidase_C19K domain-containing protein( domain architecture ID 10489803)

zf-UBP and Peptidase_C19K domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-809 7.54e-69

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.81  E-value: 7.54e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 586 CFSEGKHTRLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkrrkchketssaekkaggvy 664
Cdd:cd02667   83 CESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK-------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 665 tnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRGG 743
Cdd:cd02667  140 --AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSG 217
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568927603 744 HYTAYVKVRVPSRKLSECITGRKTAAGLKEPDGElgghWVHVSDTYVQVVPESRALSAQAYLLFYE 809
Cdd:cd02667  218 HYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQ----WYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19 super family cl02553
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
191-387 1.41e-36

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


The actual alignment was detected with superfamily member cd02667:

Pssm-ID: 470612 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 270
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktaddetrkkvkaygkegvkmnFI 350
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 568927603 351 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 387
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
61-131 5.69e-15

Zn-finger in ubiquitin-hydrolases and other protein;


:

Pssm-ID: 460464  Cd Length: 63  Bit Score: 69.98  E-value: 5.69e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927603   61 CSECLKERRfcdgqpvlpadVWLCLKCGLQGCGKNSESqHSLRHFKSSGtesHCVVISLSTWVIWCYECNE 131
Cdd:pfam02148   1 CSLCGNTSN-----------LWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-809 7.54e-69

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.81  E-value: 7.54e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 586 CFSEGKHTRLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkrrkchketssaekkaggvy 664
Cdd:cd02667   83 CESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK-------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 665 tnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRGG 743
Cdd:cd02667  140 --AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSG 217
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568927603 744 HYTAYVKVRVPSRKLSECITGRKTAAGLKEPDGElgghWVHVSDTYVQVVPESRALSAQAYLLFYE 809
Cdd:cd02667  218 HYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQ----WYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-387 1.41e-36

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 270
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktaddetrkkvkaygkegvkmnFI 350
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 568927603 351 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 387
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
611-808 1.14e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 117.16  E-value: 1.14e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  611 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCtekrrKCHKETSsaekkaggvytnarKQLLISAVPAILILHLKRFHQA 690
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKC-----GCKQDAI--------------KQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  691 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktaag 770
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 568927603  771 lKEPDGElgghWVHVSDTYVQVVPESRA-LSAQAYLLFY 808
Cdd:pfam00443 277 -AYENNR----WYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
191-810 1.34e-26

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 116.52  E-value: 1.34e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYilfELMNEIKEDGTKFKISLSSapqlePLVVElsspGPLTSALFLFLHSMKEAEKGPL 270
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTW---ELRDYFLSDEYEESINEEN-----PLGMH----GSVASAYADLIKQLYDGNLHAF 334
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADDETRKKV-KAYGKEGVKMN- 348
Cdd:COG5560  335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNd 411
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 349 -FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVGNAHQPRA 426
Cdd:COG5560  412 sIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 427 SRKHSSPNDKNQLSHDR---------KHLRKWPSEEEKTVVTHPKNDNLEAspPASTLSTEA-----------SLNESLT 486
Cdd:COG5560  492 GKLGCFEIKVMCIYYGGnynmlepadKVLLQDIPQTDFVYLYETNDNGIEV--PVVHLRIEKgykskrlfgdpFLQLNVL 569
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 487 D-GSERDASLESSVDADSEASepeiASKQPVLLRSRGDSCGHAEQHP--HLPLASELPQAKEthggeeemaeaiaelhls 563
Cdd:COG5560  570 IkASIYDKLVKEFEELLVLVE----MKKTDVDLVSEQVRLLREESSPssWLKLETEIDTKRE------------------ 627
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 564 gtvtgnrDFHREKQPLNVPNNLCFsegkhTRLHSAQNAFQTLSQSYVTTSKEC-------SVQSCLYQFTSMELLMGNNK 636
Cdd:COG5560  628 -------EQVEEEGQMNFNDAVVI-----SCEWEEKRYLSLFSYDPLWTIREIgaaertiTLQDCLNEFSKPEQLGLSDS 695
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 637 LLCEDCTEKRRkchketssaekkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAA 715
Cdd:COG5560  696 WYCPGCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYM 756
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 716 TcknisVGEKVLYGLYGIVEHSGSMRGGHYTAYVkvrvpsrklsecitgrktaaglKEPDgelGGHWVHVSDTYVQVVPE 795
Cdd:COG5560  757 V-----DDPRLIYDLYAVDNHYGGLSGGHYTAYA----------------------RNFA---NNGWYLFDDSRITEVDP 806
                        650
                 ....*....|....*
gi 568927603 796 SRALSAQAYLLFYER 810
Cdd:COG5560  807 EDSVTSSAYVLFYRR 821
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
191-431 5.33e-22

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 97.51  E-value: 5.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  191 GITNLGNTCFFNAVIQNLAQTYILFELMNEIKEDGTKFKISLSSApqleplvvelsspgpLTSALFLFLHSMKEAEKG-P 269
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDIN---------------LLCALRDLFKALQKNSKSsS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  270 LSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADDetrkkvkaygkegvkmNF 349
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE----------------SL 117
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  350 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHNKGTVTVGNAHQpRASR 428
Cdd:pfam00443 118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-DAIK 196

                  ...
gi 568927603  429 KHS 431
Cdd:pfam00443 197 QLK 199
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
61-131 5.69e-15

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 69.98  E-value: 5.69e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927603   61 CSECLKERRfcdgqpvlpadVWLCLKCGLQGCGKNSESqHSLRHFKSSGtesHCVVISLSTWVIWCYECNE 131
Cdd:pfam02148   1 CSLCGNTSN-----------LWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
61-121 2.13e-06

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 45.05  E-value: 2.13e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927603    61 CSECLkerrfcdgqpvLPADVWLCLKCGLQGCGkNSESQHSLRHFKSSGtesHCVVISLST 121
Cdd:smart00290   2 CSVCG-----------TIENLWLCLTCGQVGCG-RYQNGHALEHFEETG---HPLVVKLGT 47
 
Name Accession Description Interval E-value
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
586-809 7.54e-69

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 228.81  E-value: 7.54e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 586 CFSEGKHTRLHSAqnaFQTLS-QSYVTTSKECSVQSCLYQFTSMELLMGNNKLLCEDCTEkrrkchketssaekkaggvy 664
Cdd:cd02667   83 CESCGTVSLVYEP---FLDLSlPRSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK-------------------- 139
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 665 tnARKQLLISAVPAILILHLKRFHQAGL-SLRKVNRHVDFPLTLDLAPFCAATCKNISVGEKVLYGLYGIVEHSGSMRGG 743
Cdd:cd02667  140 --AKKQYLISKLPPVLVIHLKRFQQPRSaNLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSG 217
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568927603 744 HYTAYVKVRVPSRKLSECITGRKTAAGLKEPDGElgghWVHVSDTYVQVVPESRALSAQAYLLFYE 809
Cdd:cd02667  218 HYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQ----WYYISDSDVREVSLEEVLKSEAYLLFYE 279
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-387 1.41e-36

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 139.06  E-value: 1.41e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYILFELMNEikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 270
Cdd:cd02667    1 GLSNLGNTCFFNAVMQNLSQTPALRELLSE-------------------------------------------------- 30
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktaddetrkkvkaygkegvkmnFI 350
Cdd:cd02667   31 TPKELFSQVCRKAPQFKGYQQQDSHELLRYLLDGLRT-----------------------------------------FI 69
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 568927603 351 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEE 387
Cdd:cd02667   70 DSIFGGELTSTIMCESCGTVSLVYEPFLDLSLPRSDE 106
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
610-809 7.34e-33

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 127.60  E-value: 7.34e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 610 VTTSKECSVQSCLYQFTSMELLMGNNKLLCEdctekrrkchketssaekkaGGVYTNARKQLLISAVPAILILHLKRFHQ 689
Cdd:cd02257   93 VKGLPQVSLEDCLEKFFKEEILEGDNCYKCE--------------------KKKKQEATKRLKIKKLPPVLIIHLKRFSF 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 690 AG-LSLRKVNRHVDFPLTLDLAPFCAATCKNISVGEK-VLYGLYGIVEHSG-SMRGGHYTAYVKVRVPsrklsecitgrk 766
Cdd:cd02257  153 NEdGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGsYKYELVAVVVHSGtSADSGHYVAYVKDPSD------------ 220
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 568927603 767 taaglkepdgelgGHWVHVSDTYVQVVPESRAL-----SAQAYLLFYE 809
Cdd:cd02257  221 -------------GKWYKFNDDKVTEVSEEEVLefgslSSSAYILFYE 255
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
614-809 3.89e-30

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 118.93  E-value: 3.89e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 614 KECSVQSCLYQFTSMELLMGNNKLLCEDCTEKRrkchketssaekkaggvytNARKQLLISAVPAILILHLKRFHQAGLS 693
Cdd:cd02674   82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKR-------------------KATKKLTISRLPKVLIIHLKRFSFSRGS 142
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 694 LRKVNRHVDFPLT-LDLAPFCAATCKNISvgekVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRklsecitgrktaaglk 772
Cdd:cd02674  143 TRKLTTPVTFPLNdLDLTPYVDTRSFTGP----FKYDLYAVVNHYGSLNGGHYTAYCKNNETND---------------- 202
                        170       180       190
                 ....*....|....*....|....*....|....*..
gi 568927603 773 epdgelgghWVHVSDTYVQVVPESRALSAQAYLLFYE 809
Cdd:cd02674  203 ---------WYKFDDSRVTKVSESSVVSSSAYILFYE 230
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
617-808 1.34e-29

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 119.69  E-value: 1.34e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 617 SVQSCLYQFTSMELLMGNNKLLCEDCTEKrrkchketssaekkaggvyTNARKQLLISAVPAILILHLKRFhqAGLSLRK 696
Cdd:cd02661  163 SLEDALEQFTKPEQLDGENKYKCERCKKK-------------------VKASKQLTIHRAPNVLTIHLKRF--SNFRGGK 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 697 VNRHVDFPLTLDLAPFCAAtckniSVGEKVLYGLYGIVEHSG-SMRGGHYTAYVKvrvpsrklsecitgrkTAAGLkepd 775
Cdd:cd02661  222 INKQISFPETLDLSPYMSQ-----PNDGPLKYKLYAVLVHSGfSPHSGHYYCYVK----------------SSNGK---- 276
                        170       180       190
                 ....*....|....*....|....*....|...
gi 568927603 776 gelgghWVHVSDTYVQVVPESRALSAQAYLLFY 808
Cdd:cd02661  277 ------WYNMDDSKVSPVSIETVLSQKAYILFY 303
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
611-808 1.14e-28

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 117.16  E-value: 1.14e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  611 TTSKECSVQSCLYQFTSMELLMGNNKLLCEDCtekrrKCHKETSsaekkaggvytnarKQLLISAVPAILILHLKRFHQA 690
Cdd:pfam00443 157 AELKTASLQICFLQFSKLEELDDEEKYYCDKC-----GCKQDAI--------------KQLKISRLPPVLIIHLKRFSYN 217
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  691 GLSLRKVNRHVDFPLTLDLAPFCAATcKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKvrvpsrklsecitgrktaag 770
Cdd:pfam00443 218 RSTWEKLNTEVEFPLELDLSRYLAEE-LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIK-------------------- 276
                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 568927603  771 lKEPDGElgghWVHVSDTYVQVVPESRA-LSAQAYLLFY 808
Cdd:pfam00443 277 -AYENNR----WYKFDDEKVTEVDEETAvLSSSAYILFY 310
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
191-810 1.34e-26

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 116.52  E-value: 1.34e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYilfELMNEIKEDGTKFKISLSSapqlePLVVElsspGPLTSALFLFLHSMKEAEKGPL 270
Cdd:COG5560  267 GLRNLGNTCYMNSALQCLMHTW---ELRDYFLSDEYEESINEEN-----PLGMH----GSVASAYADLIKQLYDGNLHAF 334
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRtEETKRIQasILKAFNNPTTKTADDETRKKV-KAYGKEGVKMN- 348
Cdd:COG5560  335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLH-EDLNRII--KKPYTSKPDLSPGDDVVVKKKaKECWWEHLKRNd 411
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 349 -FIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERV-SKPVLLGKMSKCRSLQETDQDHNKGTVTVGNAHQPRA 426
Cdd:COG5560  412 sIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVwKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEY 491
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 427 SRKHSSPNDKNQLSHDR---------KHLRKWPSEEEKTVVTHPKNDNLEAspPASTLSTEA-----------SLNESLT 486
Cdd:COG5560  492 GKLGCFEIKVMCIYYGGnynmlepadKVLLQDIPQTDFVYLYETNDNGIEV--PVVHLRIEKgykskrlfgdpFLQLNVL 569
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 487 D-GSERDASLESSVDADSEASepeiASKQPVLLRSRGDSCGHAEQHP--HLPLASELPQAKEthggeeemaeaiaelhls 563
Cdd:COG5560  570 IkASIYDKLVKEFEELLVLVE----MKKTDVDLVSEQVRLLREESSPssWLKLETEIDTKRE------------------ 627
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 564 gtvtgnrDFHREKQPLNVPNNLCFsegkhTRLHSAQNAFQTLSQSYVTTSKEC-------SVQSCLYQFTSMELLMGNNK 636
Cdd:COG5560  628 -------EQVEEEGQMNFNDAVVI-----SCEWEEKRYLSLFSYDPLWTIREIgaaertiTLQDCLNEFSKPEQLGLSDS 695
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 637 LLCEDCTEKRRkchketssaekkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLT-LDLAPFCAA 715
Cdd:COG5560  696 WYCPGCKEFRQ-------------------ASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDdLDLSGVEYM 756
                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 716 TcknisVGEKVLYGLYGIVEHSGSMRGGHYTAYVkvrvpsrklsecitgrktaaglKEPDgelGGHWVHVSDTYVQVVPE 795
Cdd:COG5560  757 V-----DDPRLIYDLYAVDNHYGGLSGGHYTAYA----------------------RNFA---NNGWYLFDDSRITEVDP 806
                        650
                 ....*....|....*
gi 568927603 796 SRALSAQAYLLFYER 810
Cdd:COG5560  807 EDSVTSSAYVLFYRR 821
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
619-808 9.15e-26

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 109.00  E-value: 9.15e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 619 QSCLYQFTSMELLmGNNKLLCEDCtekrrkchketssaekkagGVYTNARKQLLISAVPAILILHLKRF-HQAGLSLRKV 697
Cdd:cd02660  179 SDCLDRFTRPEKL-GDFAYKCSGC-------------------GSTQEATKQLSIKKLPPVLCFQLKRFeHSLNKTSRKI 238
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 698 NRHVDFPLTLDLAPFCAATCKNISVGE----KVLYGLYGIVEHSGSMRGGHYTAYVKVRvpsrklsecitgrktaaglke 773
Cdd:cd02660  239 DTYVQFPLELNMTPYTSSSIGDTQDSNsldpDYTYDLFAVVVHKGTLDTGHYTAYCRQG--------------------- 297
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568927603 774 pdgelGGHWVHVSDTYVQVVPESRALSAQAYLLFY 808
Cdd:cd02660  298 -----DGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
617-811 2.43e-22

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 98.87  E-value: 2.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 617 SVQSCLYQFTSMELLMGNNKLLCEDCTEKRRkchketssaekkaggvytnARKQLLISAVPAILILHLKRFHQAGLSLR- 695
Cdd:cd02659  152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVD-------------------AEKGVCFKKLPPVLTLQLKRFEFDFETMMr 212
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 696 -KVNRHVDFPLTLDLAPFCAATCKNISVGEKV------LYGLYGIVEHSGSMRGGHYTAYVKVRVPSR--KLSECITGRK 766
Cdd:cd02659  213 iKINDRFEFPLELDMEPYTEKGLAKKEGDSEKkdsesyIYELHGVLVHSGDAHGGHYYSYIKDRDDGKwyKFNDDVVTPF 292
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568927603 767 TAAGLKEPDGelGGHwvhVSDTYVQVVPESRALSAQAYLLFYERI 811
Cdd:cd02659  293 DPNDAEEECF--GGE---ETQKTYDSGPRAFKRTTNAYMLFYERK 332
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
191-431 5.33e-22

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 97.51  E-value: 5.33e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  191 GITNLGNTCFFNAVIQNLAQTYILFELMNEIKEDGTKFKISLSSApqleplvvelsspgpLTSALFLFLHSMKEAEKG-P 269
Cdd:pfam00443   2 GLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRYNKDIN---------------LLCALRDLFKALQKNSKSsS 66
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  270 LSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEEtkriqasilkafnNPTTKTADDetrkkvkaygkegvkmNF 349
Cdd:pfam00443  67 VSPKMFKKSLGKLNPDFSGYKQQDAQEFLLFLLDGLHEDL-------------NGNHSTENE----------------SL 117
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  350 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIE-ERVSKPVLLGKMSKCRSLQETDQDHNKGTVTVGNAHQpRASR 428
Cdd:pfam00443 118 ITDLFRGQLKSRLKCLSCGEVSETFEPFSDLSLPIPGdSAELKTASLQICFLQFSKLEELDDEEKYYCDKCGCKQ-DAIK 196

                  ...
gi 568927603  429 KHS 431
Cdd:pfam00443 197 QLK 199
Peptidase_C19F cd02662
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
596-809 6.11e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239127 [Multi-domain]  Cd Length: 240  Bit Score: 89.73  E-value: 6.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 596 HSAQNAFQ----TLSQSY-----VTTSKECSVQSC------LYQFTSMELLMGNNKLLCEDCTEKRrkCHKETSSAEKKA 660
Cdd:cd02662   35 QDAHELFQvlleTLEQLLkfpfdGLLASRIVCLQCgesskvRYESFTMLSLPVPNQSSGSGTTLEH--CLDDFLSTEIID 112
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 661 GgvYTNARKQLLISAVPAILILHLKR--FHQAGLSLRKvNRHVDFPLTLDlapfcaatcknisvgeKVLYGLYGIVEHSG 738
Cdd:cd02662  113 D--YKCDRCQTVIVRLPQILCIHLSRsvFDGRGTSTKN-SCKVSFPERLP----------------KVLYRLRAVVVHYG 173
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568927603 739 SMRGGHYTAYVKVRVPSRKLSECITGRktaagLKEPDGELGGHWVHVSDTYVQVVPESRAL-SAQAYLLFYE 809
Cdd:cd02662  174 SHSSGHYVCYRRKPLFSKDKEPGSFVR-----MREGPSSTSHPWWRISDTTVKEVSESEVLeQKSAYMLFYE 240
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
614-809 2.69e-15

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 77.35  E-value: 2.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 614 KECSVQSCLYQFTSMELLMGNNKLLCEDCtekrrKCHKEtssaekkaggvytnARKQLLISAVPAILILHLKRFHQAGls 693
Cdd:cd02663  145 QNTSITSCLRQFSATETLCGRNKFYCDEC-----CSLQE--------------AEKRMKIKKLPKILALHLKRFKYDE-- 203
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 694 lrKVNRH------VDFPLTLDLapfcaatCKNISVGEKV--LYGLYGIVEHSGS--MRGgHYTAYVKVrvpsrklsecit 763
Cdd:cd02663  204 --QLNRYiklfyrVVFPLELRL-------FNTTDDAENPdrLYELVAVVVHIGGgpNHG-HYVSIVKS------------ 261
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 568927603 764 grktaaglkepdgelGGHWVHVSDTYVQVVPES--------RALSAQAYLLFYE 809
Cdd:cd02663  262 ---------------HGGWLLFDDETVEKIDENaveeffgdSPNQATAYVLFYQ 300
zf-UBP pfam02148
Zn-finger in ubiquitin-hydrolases and other protein;
61-131 5.69e-15

Zn-finger in ubiquitin-hydrolases and other protein;


Pssm-ID: 460464  Cd Length: 63  Bit Score: 69.98  E-value: 5.69e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927603   61 CSECLKERRfcdgqpvlpadVWLCLKCGLQGCGKNSESqHSLRHFKSSGtesHCVVISLSTWVIWCYECNE 131
Cdd:pfam02148   1 CSLCGNTSN-----------LWLCLTCGHVGCGRYQNS-HALEHYEETG---HPLAVNLSTLTVYCYPCDD 56
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
673-811 1.41e-14

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 74.84  E-value: 1.41e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 673 ISAVPAILILHLKRFHQAGlSLRKVNRHVDFPLTLDLAPfcaatCKNISVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVr 752
Cdd:COG5533  176 FVKLPKILTIQLKRFANLG-GNQKIDTEVDEKFELPVKH-----DQILNIVKETYYDLVGFVLHQGSLEGGHYIAYVKK- 248
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568927603 753 vpsrklsecitgrktaaglkepdgelGGHWVHVSDTYVQVVPESRAL---SAQAYLLFYERI 811
Cdd:COG5533  249 --------------------------GGKWEKANDSDVTPVSEEEAInekAKNAYLYFYERI 284
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
624-750 1.43e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 72.62  E-value: 1.43e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 624 QFTSMELLMGNNKLLCEDCTEkrrkchketssaekkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS------LRKV 697
Cdd:cd02671  188 QFASVERIVGEDKYFCENCHH-------------------YTEAERSLLFDKLPEVITIHLKCFAANGSEfdcyggLSKV 248
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568927603 698 NRHVDFPLTLdlapfcaaTCKNISVGEKV-LYGLYGIVEHSG-SMRGGHYTAYVK 750
Cdd:cd02671  249 NTPLLTPLKL--------SLEEWSTKPKNdVYRLFAVVMHSGaTISSGHYTAYVR 295
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
190-392 2.40e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 72.02  E-value: 2.40e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 190 KGITNLGNTCFFNAVIQNLAQTYILFE-LMNEIKEDGTKFKISLSSAP-QLEPLVVELSSPGpltsalflflhsmkeaEK 267
Cdd:cd02660    1 RGLINLGATCFMNVILQALLHNPLLRNyFLSDRHSCTCLSCSPNSCLScAMDEIFQEFYYSG----------------DR 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 268 GPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRTEETKRiqasilkafnnpttktaddetrkkVKAYGKEGVKM 347
Cdd:cd02660   65 SPYGPINLLYLSWKHSRNLAGYSQQDAHEFFQFLLDQLHTHYGGD------------------------KNEANDESHCN 120
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568927603 348 NFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSKP 392
Cdd:cd02660  121 CIIHQTFSGSLQSSVTCQRCGGVSTTVDPFLDLSLDIPNKSTPSW 165
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
616-809 4.75e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 70.98  E-value: 4.75e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 616 CSVQSCLYQFTSMELLMGNNKLLCEDCtekRRKChketssaekkaggvytNARKQLLISAVPAILILHLKRFH--QAGLS 693
Cdd:cd02664  134 PSVQDLLNYFLSPEKLTGDNQYYCEKC---ASLQ----------------DAEKEMKVTGAPEYLILTLLRFSydQKTHV 194
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 694 LRKVNRHVDFPLTLDLaPFCAATCKNISVGEK---------------VLYGLYGIVEHSG-SMRGGHYTAYvkvrvpsrk 757
Cdd:cd02664  195 REKIMDNVSINEVLSL-PVRVESKSSESPLEKkeeesgddgelvtrqVHYRLYAVVVHSGySSESGHYFTY--------- 264
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568927603 758 LSECITGRKTAAGLKEP----DGELGGHWVHVSDTYV-QVVPE------SRALSAQAYLLFYE 809
Cdd:cd02664  265 ARDQTDADSTGQECPEPkdaeENDESKNWYLFNDSRVtFSSFEsvqnvtSRFPKDTPYILFYE 327
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
617-750 6.38e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 70.53  E-value: 6.38e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 617 SVQSCLYQFTSMELLMGNNKLLCEDCTEKRrkchketssaekkaggvytNARKQLLISAVPAILILHLKR--FHQAGLSL 694
Cdd:cd02668  157 TLEECIDEFLKEEQLTGDNQYFCESCNSKT-------------------DATRRIRLTTLPPTLNFQLLRfvFDRKTGAK 217
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568927603 695 RKVNRHVDFPLTLDLAPFCAATCKNISVgekvlYGLYGIVEHSG-SMRGGHYTAYVK 750
Cdd:cd02668  218 KKLNASISFPEILDMGEYLAESDEGSYV-----YELSGVLIHQGvSAYSGHYIAHIK 269
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
617-773 4.09e-12

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 70.28  E-value: 4.09e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603  617 SVQSCLYQFTSMELLMGNNKLLCEDctekrrkcHKetssaekkaggvYTNARKQLLISAVPAILILHLKRFHQAGLS--L 694
Cdd:COG5077   339 NLQESFRRYIQVETLDGDNRYNAEK--------HG------------LQDAKKGVIFESLPPVLHLQLKRFEYDFERdmM 398
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568927603  695 RKVNRHVDFPLTLDLAPFCAATCKNiSVGEKVLYGLYGIVEHSGSMRGGHYTAYVKVRVPSRKLSECITgRKTAAGLKE 773
Cdd:COG5077   399 VKINDRYEFPLEIDLLPFLDRDADK-SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDT-RVTRATEKE 475
Peptidase_C19O cd02671
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
187-391 6.85e-12

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239136 [Multi-domain]  Cd Length: 332  Bit Score: 67.61  E-value: 6.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 187 PSVKGITNLGNTCFFNAVIQNLaqtyilfELMNEIKEdGTKFKISL-SSAPQLEplvvelsspgpltsALFLFLHSMKEA 265
Cdd:cd02671   22 LPFVGLNNLGNTCYLNSVLQVL-------YFCPGFKH-GLKHLVSLiSSVEQLQ--------------SSFLLNPEKYND 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 266 EKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAVRteetkriqasilkafnnpttktaddetrkkvkaygkegv 345
Cdd:cd02671   80 ELANQAPRRLLNALREVNPMYEGYLQHDAQEVLQCILGNIQ--------------------------------------- 120
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 568927603 346 kmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSK 391
Cdd:cd02671  121 --ELVEKDFQGQLVLRTRCLECETFTERREDFQDISVPVQESELSK 164
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
652-809 9.82e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 63.89  E-value: 9.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 652 ETSSAEKKAGGVYTnarKQLLISAVPAILILHLKRFHQAGLSLR--KVNRHVDFPLTLDLAPFCAATCknisvgekvLYG 729
Cdd:cd02657  175 EKHSPTLGRDAIYT---KTSRISRLPKYLTVQFVRFFWKRDIQKkaKILRKVKFPFELDLYELCTPSG---------YYE 242
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 730 LYGIVEHSG-SMRGGHYTAYVKVrvpsrklsecitgrktaaglkepdgELGGHWVHVSDTYVQVVPESRALSAQ------ 802
Cdd:cd02657  243 LVAVITHQGrSADSGHYVAWVRR-------------------------KNDGKWIKFDDDKVSEVTEEDILKLSgggdwh 297

                 ....*...
gi 568927603 803 -AYLLFYE 809
Cdd:cd02657  298 iAYILLYK 305
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-406 5.41e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 61.56  E-value: 5.41e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQTYILfelmneikedgtkfkislssapqleplvvelsspgpltSALFLFLHSMKEAEK--G 268
Cdd:cd02663    1 GLENFGNTCYCNSVLQALYFENLL--------------------------------------TCLKDLFESISEQKKrtG 42
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 269 PLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLdavrteetkriqasilkafnNPTTKTADDEtRKKVKAYGKEGVKM- 347
Cdd:cd02663   43 VISPKKFITRLKRENELFDNYMHQDAHEFLNFLL--------------------NEIAEILDAE-RKAEKANRKLNNNNn 101
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568927603 348 -----NFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPiIEERVSKPVLLGKMS--------------KCRSLQE 406
Cdd:cd02663  102 aepqpTWVHEIFQGILTNETRCLTCETVSSRDETFLDLSID-VEQNTSITSCLRQFSatetlcgrnkfycdECCSLQE 178
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
191-384 5.92e-10

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 60.57  E-value: 5.92e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAqtyilfelmneikedgtkfkislssapqleplvvelsspgpltsalflflhsmkeaekgpl 270
Cdd:cd02257    1 GLNNLGNTCYLNSVLQALF------------------------------------------------------------- 19
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 spkvlfnqlcqkaprfkgFQQQDSQELLHHLLDAVRTEETKRIQASILKAFNNpttktaddetrkkvkaygkegvkmNFI 350
Cdd:cd02257   20 ------------------SEQQDAHEFLLFLLDKLHEELKKSSKRTSDSSSLK------------------------SLI 57
                        170       180       190
                 ....*....|....*....|....*....|....
gi 568927603 351 DRIFIGELTSTVMCEECANISTMKDPFIDISLPI 384
Cdd:cd02257   58 HDLFGGKLESTIVCLECGHESVSTEPELFLSLPL 91
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-405 8.70e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 60.97  E-value: 8.70e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQT-YILFELMNEIKEDGtkfkislssAPQLEPLVVELSspgpltsaLFLFLHSMKEAEKGP 269
Cdd:cd02664    1 GLINLGNTCYMNSVLQALFMAkDFRRQVLSLNLPRL---------GDSQSVMKKLQL--------LQAHLMHTQRRAEAP 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 270 lsPKVLFNQlcQKAPRFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktaddetrkkvkaygkegvkmnF 349
Cdd:cd02664   64 --PDYFLEA--SRPPWFTPGSQQDCSEYLRYLLDRLHT-----------------------------------------L 98
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568927603 350 IDRIFIGELTSTVMCEECANISTMKD--PFIDISLP----IIEERVSKPVLLGK----MSKCRSLQ 405
Cdd:cd02664   99 IEKMFGGKLSTTIRCLNCNSTSARTErfRDLDLSFPsvqdLLNYFLSPEKLTGDnqyyCEKCASLQ 164
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-375 1.06e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 60.42  E-value: 1.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLaqtyilfELMNEIKEDGTKFKISLSSAPQleplvvelsSPGPLTSALFLFLHSMKEAEKgPL 270
Cdd:cd02657    1 GLTNLGNTCYLNSTLQCL-------RSVPELRDALKNYNPARRGANQ---------SSDNLTNALRDLFDTMDKKQE-PV 63
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 SPKVLFNQLCQKAPRFK------GFQQQDSQELLhhlldavrteetkriqASILKAFNNpttktaddetrkkvkAYGKEG 344
Cdd:cd02657   64 PPIEFLQLLRMAFPQFAekqnqgGYAQQDAEECW----------------SQLLSVLSQ---------------KLPGAG 112
                        170       180       190
                 ....*....|....*....|....*....|.
gi 568927603 345 VKMNFIDRIFIGELTSTVMCEECANISTMKD 375
Cdd:cd02657  113 SKGSFIDQLFGIELETKMKCTESPDEEEVST 143
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-384 1.35e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 60.37  E-value: 1.35e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQT-----YIL-FELMNEIKEDGtkFKISlssapqleplvvelsspgpltSALFLFLHSMKE 264
Cdd:cd02661    3 GLQNLGNTCFLNSVLQCLTHTpplanYLLsREHSKDCCNEG--FCMM---------------------CALEAHVERALA 59
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 265 AEKGPLSPKVLFNQLCQKAPRFKGFQQQDSQELLHHLLDAvrteetkrIQASILKAFNNpttktaDDETRKKVKAYgkeg 344
Cdd:cd02661   60 SSGPGSAPRIFSSNLKQISKHFRIGRQEDAHEFLRYLLDA--------MQKACLDRFKK------LKAVDPSSQET---- 121
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 568927603 345 vkmNFIDRIFIGELTSTVMCEECANISTMKDPFIDISLPI 384
Cdd:cd02661  122 ---TLVQQIFGGYLRSQVKCLNCKHVSNTYDPFLDLSLDI 158
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-406 2.63e-09

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 59.58  E-value: 2.63e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQNLAQT----YILFELMNEIKEDGTKfkiSLSSAPQLeplvvelsspgpltsaLFLFLHSMKEAE 266
Cdd:cd02659    4 GLKNQGATCYMNSLLQQLYMTpefrNAVYSIPPTEDDDDNK---SVPLALQR----------------LFLFLQLSESPV 64
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 267 KGPlSPKVLFNQLCQKAprFKGFQQQDSQELLHHLLDAVRTeetkriqasilkafnnpttktaddetrkKVKAYGKEGVk 346
Cdd:cd02659   65 KTT-ELTDKTRSFGWDS--LNTFEQHDVQEFFRVLFDKLEE----------------------------KLKGTGQEGL- 112
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 347 mnfIDRIFIGELTSTVMCEECANISTMKDPFIDISLPIieervskpvllgkmSKCRSLQE 406
Cdd:cd02659  113 ---IKNLFGGKLVNYIICKECPHESEREEYFLDLQVAV--------------KGKKNLEE 155
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-392 1.47e-06

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 49.98  E-value: 1.47e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQnlaqtyilfelmneikedgtkfkiSLSSapqleplvvelsspgpltsalflflhsmkeaekgpl 270
Cdd:cd02674    1 GLRNLGNTCYMNSILQ------------------------CLSA------------------------------------ 20
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 271 spkvlfnqlcqkaprfkgfQQQDSQELLHHLLDAVRteetkriqasilkafnnpttktaddetrkkvkaygkegvkmNFI 350
Cdd:cd02674   21 -------------------DQQDAQEFLLFLLDGLH-----------------------------------------SII 40
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 568927603 351 DRIFIGELTSTVMCEECANISTMKDPFIDISLPIIEERVSKP 392
Cdd:cd02674   41 VDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPIPSGSGDAP 82
ZnF_UBP smart00290
Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;
61-121 2.13e-06

Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger;


Pssm-ID: 197632  Cd Length: 50  Bit Score: 45.05  E-value: 2.13e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927603    61 CSECLkerrfcdgqpvLPADVWLCLKCGLQGCGkNSESQHSLRHFKSSGtesHCVVISLST 121
Cdd:smart00290   2 CSVCG-----------TIENLWLCLTCGQVGCG-RYQNGHALEHFEETG---HPLVVKLGT 47
Peptidase_C19N cd02670
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
673-809 2.95e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239135 [Multi-domain]  Cd Length: 241  Bit Score: 46.37  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 673 ISAVPAILILHLKRFHQAGLSLRKVNRHVDFPLTLDLAPFCAAT---CKNISVGEKVLYG--------------LYGIVE 735
Cdd:cd02670   95 FAKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDpraCSKCQLECRVCYDdkdfsptcgkfklsLCSAVC 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 736 HSG-SMRGGHYTAYVkvrvpsrklsecitgRKTAAGLKEPDGELG-GHWVHVSD-------TYVQVVPESRALSaQAYLL 806
Cdd:cd02670  175 HRGtSLETGHYVAFV---------------RYGSYSLTETDNEAYnAQWVFFDDmadrdgvSNGFNIPAARLLE-DPYML 238

                 ...
gi 568927603 807 FYE 809
Cdd:cd02670  239 FYQ 241
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
658-809 3.62e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 46.55  E-value: 3.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 658 KKAGGVYTNARKQLLISAVPAILILHLKRFH-QAGLSLRKVNRHVDFPLTLDLAPfcaatcknisvgekvlYGLYGIVEH 736
Cdd:cd02658  197 CSTCKEKTTATKTTGFKTFPDYLVINMKRFQlLENWVPKKLDVPIDVPEELGPGK----------------YELIAFISH 260
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927603 737 SG-SMRGGHYTAYVKvrvpsrklsecitgrktaaglKEPDGElgGHWVHVSDTYVQVVPESRALSAQAYLLFYE 809
Cdd:cd02658  261 KGtSVHSGHYVAHIK---------------------KEIDGE--GKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-384 1.31e-04

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 44.72  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQnlaqtyILFelMN-EIKEDGTKFKISLSSAPQLEPLVVELSSPGPLTSALFLFLHsMKEAEKGP 269
Cdd:cd02668    1 GLKNLGATCYVNSFLQ------LWF--MNlEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQ-LQFGNRSV 71
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 270 LSPKVLFNQLcqkapRFKGFQQQDSQELLHHLLDAvrteetkrIQASILKAFNNpttktaddetrkKVKaygkegvkmNF 349
Cdd:cd02668   72 VDPSGFVKAL-----GLDTGQQQDAQEFSKLFLSL--------LEAKLSKSKNP------------DLK---------NI 117
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568927603 350 IDRIFIGELTSTVMCEECANISTMKDPFIDISLPI 384
Cdd:cd02668  118 VQDLFRGEYSYVTQCSKCGRESSLPSKFYELELQL 152
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
191-308 2.93e-03

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 40.23  E-value: 2.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927603 191 GITNLGNTCFFNAVIQnlaqtyILFELMNEIKEDGTKFKISLSSAPQLEplvVELSSPGPLTsalflfLHSMKEAEKGP- 269
Cdd:cd02665    1 GLKNVGNTCWFSAVIQ------SLFSQQQDVSEFTHLLLDWLEDAFQAA---AEAISPGEKS------KNPMVQLFYGTf 65
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 568927603 270 LSPKVLFNQLCQKAPRFKGFQ-QQDSQELLHHLLDAVRTE 308
Cdd:cd02665   66 LTEGVLEGKPFCNCETFGQYPlQVNGYGNLHECLEAAMFE 105
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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