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Conserved domains on  [gi|568927000|ref|XP_006538133|]
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regulator of G-protein signaling 3 isoform X10 [Mus musculus]

Protein Classification

PHA03307 and RGS_RGS3 domain-containing protein( domain architecture ID 10171632)

PHA03307 and RGS_RGS3 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RGS_RGS3 cd08713
Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of ...
444-557 7.42e-79

Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS3 protein. RGS3 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS3 induces apoptosis when overexpressed and is involved in cell migration through interaction with the Ephrin receptor. RGS3 exits as several splice isoforms and interacts with neuroligin, estrogen receptor-alpha, and 14-3-3 outside of the GPCR pathways.


:

Pssm-ID: 188668  Cd Length: 114  Bit Score: 243.62  E-value: 7.42e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08713    1 LEKLLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEYIAIQSCKEVNLDSYTREHTKENLQ 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08713   81 NPTRGCFDLAQKRIYGLMEKDSYPRFLRSDLYQD 114
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
3-226 1.55e-10

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    3 ETEADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSK 82
Cdd:PHA03307   59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEML 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   83 DPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQEST 162
Cdd:PHA03307  139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927000  163 SQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPASRP 226
Cdd:PHA03307  219 SPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
 
Name Accession Description Interval E-value
RGS_RGS3 cd08713
Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of ...
444-557 7.42e-79

Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS3 protein. RGS3 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS3 induces apoptosis when overexpressed and is involved in cell migration through interaction with the Ephrin receptor. RGS3 exits as several splice isoforms and interacts with neuroligin, estrogen receptor-alpha, and 14-3-3 outside of the GPCR pathways.


Pssm-ID: 188668  Cd Length: 114  Bit Score: 243.62  E-value: 7.42e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08713    1 LEKLLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEYIAIQSCKEVNLDSYTREHTKENLQ 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08713   81 NPTRGCFDLAQKRIYGLMEKDSYPRFLRSDLYQD 114
RGS pfam00615
Regulator of G protein signaling domain; RGS family members are GTPase-activating proteins for ...
443-558 2.46e-51

Regulator of G protein signaling domain; RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.


Pssm-ID: 459870  Cd Length: 117  Bit Score: 171.64  E-value: 2.46e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  443 SLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 522
Cdd:pfam00615   1 SFDSLLEDQPGRRLFRQFLESEFSEENLEFWLACEEFKKADPDEERLKKAKEIYNEFLAPGSPKEINLDSDLREEIRENL 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 568927000  523 -QSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 558
Cdd:pfam00615  81 eKEPTRDLFDEAQAEVYELMEKDSYPRFLKSPLYLRL 117
RGS smart00315
Regulator of G protein signalling domain; RGS family members are GTPase-activating proteins ...
443-558 1.96e-47

Regulator of G protein signalling domain; RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.


Pssm-ID: 214613  Cd Length: 118  Bit Score: 161.28  E-value: 1.96e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   443 SLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 522
Cdd:smart00315   1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL 80
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 568927000   523 QS--ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 558
Cdd:smart00315  81 ESeePPPDLFDEAQREVYELLEKDSFPRFLESDYYLRF 118
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
3-226 1.55e-10

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    3 ETEADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSK 82
Cdd:PHA03307   59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEML 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   83 DPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQEST 162
Cdd:PHA03307  139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927000  163 SQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPASRP 226
Cdd:PHA03307  219 SPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
19-227 7.48e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 58.63  E-value: 7.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   19 PGAEEPAPSKNPSPGQELPPGqdlPPSKDPSPSQELPagqDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPP 98
Cdd:pfam03154 292 PVPPQPFPLTPQSSQSQVPPG---PSPAAPGQSQQRI---HTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQ 365
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   99 RKDSSGQEAAPGPESPSSEDI-ATCPKPPQ-SPETSTSKDSPPGQGSSPTTELPSCQGLPAgqeSTSQDPLLSQEPPVIP 176
Cdd:pfam03154 366 LPNPQSHKHPPHLSGPSPFQMnSNLPPPPAlKPLSSLSTHHPPSAHPPPLQLMPQSQQLPP---PPAQPPVLTQSQSLPP 442
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568927000  177 ESSasvqkrlpSQESPSSLGSLPEKDLAEQT--ISSGEPPVATGAVLPASRPN 227
Cdd:pfam03154 443 PAA--------SHPPTSGLHQVPSQSPFPQHpfVPGGPPPITPPSGPPTSTSS 487
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
17-155 1.53e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  17 KGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLP---PSKDPSPSQELPVG 93
Cdd:NF038329 247 DGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKdglPGKDGKDGQPGKDG 326
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927000  94 QDLPPRKDSS-GQEAAPGPESPSSEDIAT-CPKPPQSPetSTSKDsppgqgSSPTTELPSCQGL 155
Cdd:NF038329 327 LPGKDGKDGQpGKPAPKTPEVPQKPDTAPhTPKTPQIP--GQSKD------VTPAPQNPSNRGL 382
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
17-202 3.33e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 3.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  17 KGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQElPAGQDLPPSKDPSPSQELPVGQ-- 94
Cdd:NF033839 290 KKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVK-PQLETPKPEVKPQPEKPKPEVKpq 368
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  95 ------DLPPRKDSSGQEAAPGPESPSSE--DIATCPKPPQSPETSTSKDSPPGQGSSPTTEL--------PSCQGLPAG 158
Cdd:NF033839 369 pekpkpEVKPQPETPKPEVKPQPEKPKPEvkPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVkpqpekpkPEVKPQPEK 448
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568927000 159 QESTSQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKD 202
Cdd:NF033839 449 PKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQAD 492
 
Name Accession Description Interval E-value
RGS_RGS3 cd08713
Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of ...
444-557 7.42e-79

Regulator of G protein signaling (RGS) domain found in the RGS3 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS3 protein. RGS3 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS3 induces apoptosis when overexpressed and is involved in cell migration through interaction with the Ephrin receptor. RGS3 exits as several splice isoforms and interacts with neuroligin, estrogen receptor-alpha, and 14-3-3 outside of the GPCR pathways.


Pssm-ID: 188668  Cd Length: 114  Bit Score: 243.62  E-value: 7.42e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08713    1 LEKLLLHKYGLAVFRAFLQTEFSEENLEFWLACEEYKKIKSQSKMASRAKKIFAEYIAIQSCKEVNLDSYTREHTKENLQ 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08713   81 NPTRGCFDLAQKRIYGLMEKDSYPRFLRSDLYQD 114
RGS pfam00615
Regulator of G protein signaling domain; RGS family members are GTPase-activating proteins for ...
443-558 2.46e-51

Regulator of G protein signaling domain; RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.


Pssm-ID: 459870  Cd Length: 117  Bit Score: 171.64  E-value: 2.46e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  443 SLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 522
Cdd:pfam00615   1 SFDSLLEDQPGRRLFRQFLESEFSEENLEFWLACEEFKKADPDEERLKKAKEIYNEFLAPGSPKEINLDSDLREEIRENL 80
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 568927000  523 -QSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 558
Cdd:pfam00615  81 eKEPTRDLFDEAQAEVYELMEKDSYPRFLKSPLYLRL 117
RGS_RGS8 cd08711
Regulator of G protein signaling (RGS) domain found in the RGS8 protein; The RGS (Regulator of ...
433-557 4.27e-50

Regulator of G protein signaling (RGS) domain found in the RGS8 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS8 protein. RGS8 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS8 is involved in G-protein-gated potassium channels regulation and predominantly expressed in the brain. RGS8 also is selectively expressed in the hematopoietic system (NK cells).


Pssm-ID: 188666  Cd Length: 125  Bit Score: 168.76  E-value: 4.27e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 433 TSEEALKWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDS 512
Cdd:cd08711    1 STEEATRWADSFDVLLSHKYGVAAFRAFLKTEFSEENLEFWLACEEFKKTRSTAKLVSKAHRIFEEFVDVQAPREVNIDF 80
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 568927000 513 YTREHTKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08711   81 QTREATRKNLQEPSLTCFDQAQGKVHSLMEKDSYPRFLRSKMYLD 125
RGS_RGS4 cd08714
Regulator of G protein signaling (RGS) domain found in the RGS4 protein; The RGS (Regulator of ...
444-557 5.91e-48

Regulator of G protein signaling (RGS) domain found in the RGS4 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS4 protein. RGS4 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. RGS4 is expressed widely in brain including prefrontal cortex, striatum, locus coeruleus (LC), and hippocampus and has been implicated in regulation of opioid, cholinergic, and serotonergic signaling. Dysfunctions in RGS4 proteins are involved in etiology of Parkinson's disease, addiction, and schizophrenia. RGS4 also is up-regulated in the failing human heart. RGS4 interacts with many binding partners outside of GPCR pathways, including calmodulin, COP, Kir3, PIP, calcium/CaM, PA, ErbB3, and 14-3-3.


Pssm-ID: 188669  Cd Length: 114  Bit Score: 162.74  E-value: 5.91e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08714    1 LENLINHECGLAAFKAFLKSEYSEENIDFWVSCEDYKKTKSPSKLSPKARKIYEEFISVQATKEVNLDSCTREETSRNML 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08714   81 EPTISCFDEAQKKIFTLMEKDSYRRFLKSRFYLD 114
RGS_RGS5 cd08717
Regulator of G protein signaling (RGS) domain found in the RGS5 protein; The RGS (Regulator of ...
444-555 1.34e-47

Regulator of G protein signaling (RGS) domain found in the RGS5 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS5 protein. RGS5 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Two splice isoforms of RGS5 has been found: RGS5L (long) which is expressed in smooth muscle cells (pericytes) and heart and RGS5S (short) which is highly expressed in the ciliary body of the eye, kidney, brain, spleen, skeletal muscle, and small intestine. Outside of the GPCR pathway, RGS5 interacts with the 14-3-3 protein.


Pssm-ID: 188672  Cd Length: 114  Bit Score: 161.70  E-value: 1.34e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08717    1 LDKLLQNSYGLASFKSFLKSEFSEENIEFWEACEDYKKTKSPLKMATKAKKIYEEFIQTEAPKEVNIDHFTKDVTMKNLV 80
                         90       100       110
                 ....*....|....*....|....*....|..
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08717   81 EPSSSSFDLAQKRIFALMEKDSLPRFVRSEFY 112
RGS smart00315
Regulator of G protein signalling domain; RGS family members are GTPase-activating proteins ...
443-558 1.96e-47

Regulator of G protein signalling domain; RGS family members are GTPase-activating proteins for heterotrimeric G-protein alpha-subunits.


Pssm-ID: 214613  Cd Length: 118  Bit Score: 161.28  E-value: 1.96e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   443 SLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 522
Cdd:smart00315   1 SLESLLSDPIGRLLFREFLESEFSEENLEFWLAVEEFKKAEDDEERIAKAREIYDKFLSPNAPKEVNLDSDLREKIEENL 80
                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 568927000   523 QS--ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 558
Cdd:smart00315  81 ESeePPPDLFDEAQREVYELLEKDSFPRFLESDYYLRF 118
RGS_RGS2 cd08709
Regulator of G protein signaling (RGS) domain found in the RGS2 protein; The RGS (Regulator of ...
444-557 1.59e-46

Regulator of G protein signaling (RGS) domain found in the RGS2 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS2 protein. RGS2 is a member of R4/RGS subfamily of RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G- alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS2 plays important roles in the regulation of blood pressure and the pathogenesis of human hypertension, as well as in bone formation in osteoblasts. Outside of the GPCR pathway RGS2 interacts with calmodulin, beta- COP, tubulin, PKG1-alpha, and TRPV6.


Pssm-ID: 188664  Cd Length: 114  Bit Score: 158.68  E-value: 1.59e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08709    1 FDELLASKYGVAAFRAFLKSEFSEENIEFWLACEDFKKTKSPQKLTSKAKKIYTDFIEKEAPKEINIDFQTKTLIAQNIQ 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08709   81 EATSGCFTAAQKRVYSLMENNSYPRFLESEFYQE 114
RGS_RGS16 cd08710
Regulator of G protein signaling (RGS) domain found in the RGS16 protein; The RGS (Regulator ...
444-557 1.25e-45

Regulator of G protein signaling (RGS) domain found in the RGS16 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS16 protein. RGS16 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS16 is a member of the R4/RGS subfamily and interacts with neuronal G-alpha0. RGS16 expression is upregulated by IL-17 of the NF-kappaB signaling pathway in autoimmune B cells.


Pssm-ID: 188665  Cd Length: 114  Bit Score: 156.38  E-value: 1.25e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08710    1 FDLLLNSKNGVAAFHAFLKTEFSEENLEFWLACEEFKKIRSATKLASRAHHIFEEFIRSEAPKEVNIDHETRELTRTNLQ 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08710   81 AATTSCFDVAQGKTRTLMEKDSYPRFLKSPAYRD 114
RGS_RGS18 cd08712
Regulator of G protein signaling (RGS) domain found in the RGS18 protein; The RGS (Regulator ...
444-557 2.28e-44

Regulator of G protein signaling (RGS) domain found in the RGS18 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS18 protein. RGS18 is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS18 is a member of the R4/RGS subfamily and is expressed predominantly in osteoclasts where it acts as a negative regulator of the acidosis-induced osteoclastogenic OGR1/NFAT signaling pathway. RANKL (receptor activator of nuclear factor B ligand) stimulates osteoclastogenesis by inhibiting expression of RGS18.


Pssm-ID: 188667  Cd Length: 114  Bit Score: 153.17  E-value: 2.28e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08712    1 FDKLLSHKDGLEAFTRFLKTEFSEENIEFWIACEDYKKSKTPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVTTNSIE 80
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08712   81 QPTLTSFDAAQSRVYQLMEQDSYPRFLKSDIYLD 114
RGS cd07440
Regulator of G protein signaling (RGS) domain superfamily; The RGS domain is an essential part ...
448-557 2.71e-42

Regulator of G protein signaling (RGS) domain superfamily; The RGS domain is an essential part of the Regulator of G-protein Signaling (RGS) protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. While inactive, G-alpha-subunits bind GDP, which is released and replaced by GTP upon agonist activation. GTP binding leads to dissociation of the alpha-subunit and the beta-gamma-dimer, allowing them to interact with effectors molecules and propagate signaling cascades associated with cellular growth, survival, migration, and invasion. Deactivation of the G-protein signaling controlled by the RGS domain accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in the reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins are also involved in apoptosis and cell proliferation, as well as modulation of cardiac development. Several RGS proteins can fine-tune immune responses, while others play important roles in neuronal signals modulation. Some RGS proteins are principal elements needed for proper vision.


Pssm-ID: 188659 [Multi-domain]  Cd Length: 113  Bit Score: 147.54  E-value: 2.71e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 448 LLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKK-VKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ--S 524
Cdd:cd07440    1 LRDPYGLEYFRQFLKSEHCEENLEFWLAVEKFKKtTSSDEELKSKAKEIYDKYISKDAPKEINIPESIREEIEENLEepY 80
                         90       100       110
                 ....*....|....*....|....*....|...
gi 568927000 525 ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd07440   81 PDPDCFDEAQEHILNLLEKDSYPRFLKSDLYLK 113
RGS_RGS1 cd08715
Regulator of G protein signaling (RGS) domain found in the RGS1 protein; The RGS (Regulator of ...
444-558 4.09e-42

Regulator of G protein signaling (RGS) domain found in the RGS1 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS1 protein. RGS1 is a member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS 1 is expressed predominantly in hematopoietic compartments, including T and B lymphocytes, and may play a major role in chemokine-mediated homing of lymphocytes to secondary lymphoid organs. In addition, RGS1 interacts with calmodulin and 14-3-3 protein outside of the GPCR pathway.


Pssm-ID: 188670  Cd Length: 114  Bit Score: 147.02  E-value: 4.09e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQsKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQ 523
Cdd:cd08715    1 LEKLLASQTGQNVFRSFLKSEFSEENIEFWLACEDYKKTESD-LLPCKAEEIYKEFVQSDAAKQINIDFRTRESTAKKIK 79
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDL 558
Cdd:cd08715   80 APTPTCFDEAQKVIYILMERDSYPRFLKSDIYLNL 114
RGS_RGS21 cd08723
Regulator of G protein signaling (RGS) domain found in the RGS21 protein; The RGS (Regulator ...
447-555 2.84e-40

Regulator of G protein signaling (RGS) domain found in the RGS21 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part RGS21 protein, a member of RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, apoptosis, and cell proliferation, as well as modulation of cardiac development. RGS21 is a member of the R4/RGS subfamily and its mRNA was detected only in sensory taste cells that express sweet taste receptors and the taste G-alpha subunit, gustducin, suggesting a potential role in regulating taste transduction.


Pssm-ID: 188678  Cd Length: 111  Bit Score: 142.12  E-value: 2.84e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 447 LLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQSIT 526
Cdd:cd08723    1 LLANQAGLDAFRTFLKSEFSEENVEFWLACEDFKKTKSSTEIALKAQMIYSEFIQADAPKEINIDFHTRDLISQNISEPT 80
                         90       100
                 ....*....|....*....|....*....
gi 568927000 527 RGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08723   81 LKCFDEAQSLIYCLMAKDSFPRFLKSEVY 109
RGS_R7-like cd08705
Regulator of G protein signaling (RGS) domain found in the R7 subfamily of proteins; The RGS ...
439-557 2.35e-39

Regulator of G protein signaling (RGS) domain found in the R7 subfamily of proteins; The RGS (Regulator of G-protein Signaling) domain is an essential part of the R7 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R7 subfamily includes RGS6, RGS7, RGS9, and RGS11, all of which, in humans, are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes. In addition, R7 proteins were found to bind many other proteins outside of the G protein signaling pathways including: m-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, guanylyl cyclase, among others.


Pssm-ID: 188660  Cd Length: 121  Bit Score: 139.68  E-value: 2.35e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 439 KWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVkSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHT 518
Cdd:cd08705    4 RWGFSFSELLKDPVGREQFLKFLEKEFSGENLRFWEACQDLKYG-PQSQVPEKVQEIYQEFLAPGAPSWINIDSKTMEIT 82
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 568927000 519 KENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08705   83 LKNLKDPHRYTFDAAQEHIYMLMKKDSYPRFLRSDIYKE 121
RGS_RZ-like cd08718
Regulator of G protein signaling (RGS) domain found in the RZ protein; The RGS (Regulator of ...
440-555 1.64e-38

Regulator of G protein signaling (RGS) domain found in the RZ protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, which results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS.


Pssm-ID: 188673  Cd Length: 118  Bit Score: 137.21  E-value: 1.64e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 440 WSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTK 519
Cdd:cd08718    1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKKEANKHVIEEKARLIYEDYISILSPKEVSLDSRVREVIN 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568927000 520 ENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08718   81 RNMLEPSPHTFDDAQLQIYTLMHRDSYPRFLNSAIY 116
RGS_RGS20 cd08746
Regulator of G protein signaling (RGS) domain found in the RGS20 protein; The RGS (Regulator ...
428-557 2.00e-38

Regulator of G protein signaling (RGS) domain found in the RGS20 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS20 protein (also known as RGSZ1), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP resulting in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins include RGS17, RGS19 (former GAIP), and the splice variant of RGS20, Ret-RGS. RGS20 is expressed exclusively in brain, with the highest concentrations in the temporal lobe and the caudate nucleus and may play a role in signaling regulation in these brain regions. RGS20 acts as a GAP of both G-alpha-z and G-alpha-I and controls signaling in the mu opioid receptor pathway.


Pssm-ID: 188700 [Multi-domain]  Cd Length: 167  Bit Score: 138.97  E-value: 2.00e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 428 KSFKPTSEEALKWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKE 507
Cdd:cd08746   38 ESPKPTLEEVCAWGQSFDKLMLTPAGRNAFREFLRTEFSEENMLFWMACEELKKEANKSVIEEKARIIYEDYISILSPKE 117
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568927000 508 VNLDSYTREHTKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08746  118 VSLDSRVREVINRNMLEPSQHTFDDAQLQIYTLMHRDSYPRFMNSAIYKN 167
RGS_RGS13 cd08716
Regulator of G protein signaling (RGS) domain found in the RGS13 protein; The RGS (Regulator ...
445-555 2.62e-36

Regulator of G protein signaling (RGS) domain found in the RGS13 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS13 protein. RGS13 is member of the R4/RGS subfamily of the RGS family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha subunits. The RGS domain controls G-protein signaling by accelerating the GTPase activity of the G-alpha subunit which leads to G protein deactivation and promotes desensitization. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS13 is predominantly expressed in T and B lymphocytes and in mast cells, and plays a role in adaptive immune responses. RGS13 also found in Rgs13, which is also expressed in dendritic cells and in neuroendocrine cells of the thymus, gastrointestinal, and respiratory tracts. Outside of the GPCR pathway, RGS5 interacts with the PIP3 protein.


Pssm-ID: 188671  Cd Length: 114  Bit Score: 131.20  E-value: 2.62e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 445 EKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQS 524
Cdd:cd08716    2 ENLMATKYGPIIYATYLKTEHSDENIEFWLACETYKKIASQRKRISMARKLFASYIQPQAPREINIDSPTRKAIIRNIQE 81
                         90       100       110
                 ....*....|....*....|....*....|.
gi 568927000 525 ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08716   82 PTQSCFDEAQRIVYMHMERDSYPRFLESKFY 112
RGS_RGS19 cd08745
Regulator of G protein signaling (RGS) domain found in the RGS19 protein; The RGS (Regulator ...
440-555 1.84e-35

Regulator of G protein signaling (RGS) domain found in the RGS19 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS19 protein (also known as GAIP), a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling is controlled by RGS domains, which accelerate GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, resulting in a reassociation of the alpha-subunit with the beta-gamma-dimer and an inhibition of downstream activity. As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The RZ subfamily of RGS proteins includes RGS17, RGS20, and its splice variant Ret-RGS. RGS19 participates in regulation of dopamine receptor D2R and D3R, as well as beta-adrenergic receptors .


Pssm-ID: 188699  Cd Length: 118  Bit Score: 129.02  E-value: 1.84e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 440 WSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTK 519
Cdd:cd08745    1 WAQSFDKLMKSPAGRNVFREFLRTEYSEENMLFWLACEELKAEANKHVIDEKARLIYEDYISILSPKEVSLDSRVREGIN 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568927000 520 ENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08745   81 RKMQEPSSHTFDDAQLQIYTLMHRDSYPRFLNSPIY 116
RGS_R12-like cd08706
Regulator of G protein signaling (RGS) domain found in the R12 subfamily of proteins; The RGS ...
444-557 6.06e-34

Regulator of G protein signaling (RGS) domain found in the R12 subfamily of proteins; The RGS (Regulator of G-protein Signaling) domain is an essential part of the R12 (Neuronal RGS) protein subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play a critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of G-protein signaling, controlled by RGS domain, accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP that results in reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. The R12 RGS subfamily includes RGS10, RGS12 and RGS14 all of which are highly selective for G-alpha-i1 over G-alpha-q.


Pssm-ID: 188661  Cd Length: 113  Bit Score: 124.74  E-value: 6.06e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSyTREHTKENLQ 523
Cdd:cd08706    1 FERLLQDPVGVKYFTEFLKKEFSEENILFWQACEKFKKIPDKKQLVQEAREIYDTFLSSKASSPVNIDS-QAQLAEEMLE 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08706   80 EPHPDMFQKQQLQIFNLMKFDSYSRFLKSPLYQQ 113
RGS_RGS6 cd08737
Regulator of G protein signaling (RGS) domain found in the RGS6 protein; The RGS (Regulator of ...
439-559 1.46e-29

Regulator of G protein signaling (RGS) domain found in the RGS6 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS6 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). Other members of the R7 subfamily (Neuronal RGS) include: RGS7, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS6 exists in multiple splice isoforms with identical RGS domains, but possess complete or incomplete GGL domains and distinct N- and C-terminal domains. RGS6 interacts with SCG10, a neuronal growth-associated protein and therefore regulates neuronal differentiation. Another RGS6-binding protein is DMAP1, a component of the Dnmt1 complex involved in repression of newly replicated genes. Mutations of a critical residue required for interaction of RGS6 protein with G proteins did not affect the ability of RGS6 to interact with both SCG10 and DMAP1. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis.


Pssm-ID: 188691  Cd Length: 125  Bit Score: 112.80  E-value: 1.46e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 439 KWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQsKMAAKAKKIFAEFIAIQACKEVNLDSYTREHT 518
Cdd:cd08737    5 RWGFSLDEVLKDPVGRDQFLRFLESEFSSENLRFWLAVQDLKKQPLQ-DVAKRVEEIWQEFLAPGAPSAINLDSHSYEKT 83
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 568927000 519 KENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLI 559
Cdd:cd08737   84 SQNVKDPGRYTFEDAQEHIYKLMKSDSYARFLRSNAYQDLL 124
RGS_RGS11 cd08740
Regulator of G protein signaling (RGS) domain found in the RGS11 protein; The RGS (Regulator ...
439-561 6.84e-28

Regulator of G protein signaling (RGS) domain found in the RGS11 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS11 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS9, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS11 is expressed exclusively in retinal ON-bipolar neurons in which it forms complexes with G-beta-5 and R7AP (RGS7 anchor protein ) and plays crucial roles in processing the light responses of retinal neurons.


Pssm-ID: 188694  Cd Length: 126  Bit Score: 108.46  E-value: 6.84e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 439 KWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKvKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHT 518
Cdd:cd08740    5 RWGFSFRELLNDPVGRKEFLDFLEKEFSAENLSFWEACEELRY-GEQSKIPELVDSVYQQFLAPGATRWVNIDSKTMERT 83
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 568927000 519 KENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLDLINQ 561
Cdd:cd08740   84 LEGLKQPHRYVLDDAQMHIYMLMKKDSYPRFLKSDLYKNLLAE 126
RGS_RGS17 cd08744
Regulator of G protein signaling (RGS) domain found in the RGS17 protein; The RGS (Regulator ...
440-555 7.28e-28

Regulator of G protein signaling (RGS) domain found in the RGS17 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS17 protein, a member of the RZ subfamily of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, the RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play critical regulatory roles as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of the G-protein signaling controlled by the RGS domain, which accelerates GTPase activity of the alpha subunit by hydrolysis of GTP to GDP, results in reassociation of the alpha-subunit with the beta-gamma-dimer and inhibition of downstream activity. The RZ subfamily of RGS proteins includes RGS19 (former GAIP), RGS20, and its splice variant Ret-RGS. RGS17 is a relatively non-selective GAP for G-alpha-z and other G-alpha-i/o proteins. RGS17 blocks dopamine receptor-mediated inhibition of cAMP accumulation; it also blocks thyrotropin releasing hormone-stimulated Ca++ mobilization. RGS17, like other members of RZ subfamily, can act either as a GAP or as G-protein effector antogonist.


Pssm-ID: 188698  Cd Length: 118  Bit Score: 107.89  E-value: 7.28e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 440 WSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTK 519
Cdd:cd08744    1 WSQNFDKMMKTPAGRNLFREFLRTEYSEENLLFWLACEDLKKEQNKKVIEEKARLIYEDYISILSPKEVSLDSRVREVIN 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568927000 520 ENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08744   81 RNLLDPNPHMYEDAQLQIYTLMHRDSFPRFLNSQIY 116
RGS_RGS10 cd08741
Regulator of G protein signaling (RGS) domain found in the RGS10 protein; RGS (Regulator of ...
444-557 3.92e-26

Regulator of G protein signaling (RGS) domain found in the RGS10 protein; RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS10 protein. RGS10 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS10 belong to the R12 RGS subfamily, which includes RGS12 and RGS14, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS10 exists in 2 splice isoforms. RGS10A is specifically expressed in osteoclasts and is a key component in the RANKL signaling mechanism for osteoclast differentiation, whereas RGS10B expressed in brain and in immune tissues and has been implicated in diverse processes including: promoting of dopaminergic neuron survival via regulation of the microglial inflammatory response, modulation of presynaptic and postsynaptic G-protein signalling, as well as a possible role in regulation of gene expression.


Pssm-ID: 188695  Cd Length: 113  Bit Score: 102.81  E-value: 3.92e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKEnLQ 523
Cdd:cd08741    1 LENLLEDPEGVKRFREFLKKEFSEENVLFWLACEDFKKMQDKTQMQEKAKEIYMTFLSSKASSQVNVEGQSRLNEKI-LE 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 524 SITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08741   80 EPHPLMFQKLQDQIFNLMKYDSYSRFLKSDLFLK 113
RGS_RGS9 cd08739
Regulator of G protein signaling (RGS) domain found in the RGS9 protein; The RGS (Regulator of ...
439-555 1.10e-25

Regulator of G protein signaling (RGS) domain found in the RGS9 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS9 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS7, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. RGS9 forms constitutive complexes with G-beta-5 subunit and controls such fundamental functions as vision and behavior. RGS9 exists in two splice isoforms: RGS9-1 which regulates phototransduction in rods and cones and RGS9-2 which regulates dopamine and opioid signaling in the basal ganglia. In addition, RGS9 was found to bind many other proteins outside of G protein signaling pathways including: mu-opioid receptor, beta-arrestin, alpha-actinin-2, NMDAR, polycystin, spinophilin, and guanylyl cyclase, among others.


Pssm-ID: 188693  Cd Length: 121  Bit Score: 102.03  E-value: 1.10e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 439 KWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKkVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHT 518
Cdd:cd08739    4 RWAFNFSELIRDPKGRQSFQLFLKKEFSGENLGFWEACEDLK-YGDQSKVKEKAEEIYKLFLAPGARRWINIDGKTMDIT 82
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568927000 519 KENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08739   83 VKGLKHPHRYVLDAAQTHIYMLMKKDSYARYLKSPIY 119
RGS_RGS14 cd08743
Regulator of G protein signaling (RGS) domain found in the RGS14 protein; RGS (Regulator of ...
440-557 1.98e-23

Regulator of G protein signaling (RGS) domain found in the RGS14 protein; RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS14 protein. RGS14 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS14 belong to the R12 RGS subfamily, which includes RGS10 and RGS12, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS14 binds and regulates the subcellular localization and activities of H-Ras and Raf kinases in cells and thereby integrates G protein and Ras/Raf signaling pathways.


Pssm-ID: 188697  Cd Length: 129  Bit Score: 95.87  E-value: 1.98e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 440 WSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQ--SKMAAKAKKIFAEFIAIQACKEVNLDSYTReH 517
Cdd:cd08743    7 WAVSFERLLQDPLGVEYFTEFLKKEFSAENVNFWKACERFQQIPASdtQQLAQEARKIYNEFLSSSSQSPVNIDQQAW-I 85
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 568927000 518 TKENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08743   86 GEDMLATPSPDMFRAQQLQIFNLMKFDSYARFVKSPLYQD 125
RGS_RGS7 cd08738
Regulator of G protein signaling (RGS) domain found in the RGS7 protein; The RGS (Regulator of ...
439-555 3.10e-22

Regulator of G protein signaling (RGS) domain found in the RGS7 protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS7 protein, a member of R7 subfamily of the RGS protein family. RGS is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. Other members of the R7 subfamily (Neuronal RGS) include: RGS6, RGS9, and RGS11, all of which are expressed predominantly in the nervous system, form an obligatory complex with G-beta-5, and play important roles in the regulation of crucial neuronal processes such as vision and motor control. Additionally they have been implicated in many neurological conditions such as anxiety, schizophrenia, and drug dependence. R7 RGS proteins are key modulators of the pharmacological effects of drugs involved in the development of tolerance and addiction. In addition, RGS7 was found to bind a component of the synaptic fusion complex, snapin, and some other proteins outside of G protein signaling pathways.


Pssm-ID: 188692  Cd Length: 121  Bit Score: 92.09  E-value: 3.10e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 439 KWSESLEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKvKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHT 518
Cdd:cd08738    4 RWGFGMDEALKDPVGREQFLKFLESEFSSENLRFWLAVEDLKK-RPIREVPSRVQEIWQEFLAPGAPSAINLDSKSYDKT 82
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568927000 519 KENLQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08738   83 TQNVKDPGRYTFEDAQEHIYKLMKSDSYPRFIRSSAY 119
RGS_RGS12 cd08742
Regulator of G protein signaling (RGS) domain found in the RGS12 protein; RGS (Regulator of ...
444-555 3.15e-18

Regulator of G protein signaling (RGS) domain found in the RGS12 protein; RGS (Regulator of G-protein Signaling) domain is an essential part of the RGS12 protein. RGS12 is a member of the RA/RGS subfamily of RGS proteins family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS12 belong to the R12 RGS subfamily, which includes RGS10 and RGS14, all of which are highly selective for G-alpha-i1 over G-alpha-q. RGS12 exist in multiple splice variants: RGS12s (short) contains the core RGS/RBD/GoLoco domains, while RGS12L (long) has additional N-terminal PDZ and PTB domains. RGS12 splice variants show distinct expression patterns, suggesting that they have discrete functions during mouse embryogenesis. RGS12 also may play a critical role in coordinating Ras-dependent signals that are required for promoting and maintaining neuronal differentiation.


Pssm-ID: 188696  Cd Length: 115  Bit Score: 80.49  E-value: 3.15e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVKSQSK--MAAKAKKIFAEFIAIQACKEVNLDSYTrEHTKEN 521
Cdd:cd08742    1 FERLLQDPVGVRYFSEFLRKEFSEENILFWQACEYFNHVPAHDKkeLSYRAREIFSKFLCSKATTPVNIDSQA-QLADDI 79
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 522 LQSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08742   80 LNAPHPDMFKEQQLQIFNLMKFDSYTRFLKSPLY 113
RGS_Axin cd08707
Regulator of G protein signaling (RGS) domain found in the Axin protein; The RGS (Regulator of ...
444-556 3.29e-15

Regulator of G protein signaling (RGS) domain found in the Axin protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the Axin protein. Axin is a member of the RA/RGS subfamily of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, and skeletal and muscle development. The RGS domain of Axin is specifically interacts with the heterotrimeric G-alpha12 protein, but not with closely related G-alpha13, and provides a unique tool to regulate G-alpha12-mediated signaling processes. The RGS domain of Axin also interacts with the tumor suppressor protein APC (Adenomatous Polyposis Coli) in order to control the cytoplasmic level of the proto-oncogene, beta-catenin.


Pssm-ID: 188662  Cd Length: 117  Bit Score: 72.11  E-value: 3.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 444 LEKLLLHKYGLEVFQAFLRTEFSEENLEFWLACEDFKKVK-SQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENL 522
Cdd:cd08707    1 LHSLLDDQDGIELFRTYLEQEGCADLLDFWFACNGFRKMSdSEEKRSKLAKAIYRRYIKDNGIVSRQLKPATKSFIKECI 80
                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 568927000 523 --QSITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYL 556
Cdd:cd08707   81 kkQQLDPAMFDQAQTEIQTTMEENTYPSFLKSDIYL 116
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
3-226 1.55e-10

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 64.42  E-value: 1.55e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    3 ETEADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSK 82
Cdd:PHA03307   59 AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEML 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   83 DPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQEST 162
Cdd:PHA03307  139 RPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS 218
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927000  163 SQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPASRP 226
Cdd:PHA03307  219 SPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRP 282
PHA03247 PHA03247
large tegument protein UL36; Provisional
12-232 4.59e-09

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 59.57  E-value: 4.59e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   12 PLVEGKGPGAEEPAPSKnpSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELP-AGQDLPPSKDPSPSQE- 89
Cdd:PHA03247 2772 PAAPAAGPPRRLTRPAV--ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPtSAQPTAPPPPPGPPPPs 2849
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   90 LPVGQDLPP----RKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPScqgLPAGQESTSQD 165
Cdd:PHA03247 2850 LPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPP---PPQPQPQPPPP 2926
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000  166 PLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAeqTISSGEPPVATGAVlPASRPNFVIPE 232
Cdd:PHA03247 2927 PQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG--ALVPGRVAVPRFRV-PQPAPSREAPA 2990
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
19-227 7.48e-09

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 58.63  E-value: 7.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   19 PGAEEPAPSKNPSPGQELPPGqdlPPSKDPSPSQELPagqDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPP 98
Cdd:pfam03154 292 PVPPQPFPLTPQSSQSQVPPG---PSPAAPGQSQQRI---HTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQ 365
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   99 RKDSSGQEAAPGPESPSSEDI-ATCPKPPQ-SPETSTSKDSPPGQGSSPTTELPSCQGLPAgqeSTSQDPLLSQEPPVIP 176
Cdd:pfam03154 366 LPNPQSHKHPPHLSGPSPFQMnSNLPPPPAlKPLSSLSTHHPPSAHPPPLQLMPQSQQLPP---PPAQPPVLTQSQSLPP 442
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568927000  177 ESSasvqkrlpSQESPSSLGSLPEKDLAEQT--ISSGEPPVATGAVLPASRPN 227
Cdd:pfam03154 443 PAA--------SHPPTSGLHQVPSQSPFPQHpfVPGGPPPITPPSGPPTSTSS 487
RGS_AKAP2_2 cd08721
Regulator of G protein signaling (RGS) domain 2 found in the A-kinase anchoring protein, ...
457-555 2.17e-08

Regulator of G protein signaling (RGS) domain 2 found in the A-kinase anchoring protein, D-AKAP2; The RGS (Regulator of G-protein Signaling) domain is an essential part of the D-AKAP2 (A-kinase anchoring protein), a member of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. D-AKAP2 contains two RGS domains which play an important role in spatiotemporal localization of cAMP-dependent PKA (cyclic AMP-dependent protein kinase) that regulates many different signaling pathways by phosphorylation of target proteins. This cd contains the second RGS domain.


Pssm-ID: 188676  Cd Length: 121  Bit Score: 52.73  E-value: 2.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 457 FQAFLRTEFSEENLEFWLACEDFKKV-----KSQSKMAAK--AKKIFAEFIAIQACKEVNLDSYTREHTKenlQSITRG- 528
Cdd:cd08721   11 FMEYMEQEGARNLLQFWLAADNFQSQlaakeGQYDGQQAQndAMIIYDKYFSLQATEPLGFDDKTRLEVE---SNICREg 87
                         90       100       110
                 ....*....|....*....|....*....|..
gi 568927000 529 -----CFDLAQKRIFGLMEKDSYPRFLRSDLY 555
Cdd:cd08721   88 gplpsCFEAPLLQALTTLEQHYLPGFLSSQLY 119
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
33-249 6.58e-08

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 55.65  E-value: 6.58e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  33 GQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPRKDSSGQEAAPGPE 112
Cdd:PRK12323 370 GGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPA 449
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 113 SPSSedIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVIPESSASVQKRLPSQESP 192
Cdd:PRK12323 450 PAPA--PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIP 527
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000 193 SSLGSLPEKDLAEQTissgEPPVATGAVLPASRPNFVIPEVRLDNAYSQLDGAHGGS 249
Cdd:PRK12323 528 DPATADPDDAFETLA----PAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGD 580
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
16-223 3.05e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 53.34  E-value: 3.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  16 GKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQelPVGQD 95
Cdd:PRK12323 371 GAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARG--PGGAP 448
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  96 LPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVI 175
Cdd:PRK12323 449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPD 528
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 568927000 176 PESSASVQKRLPSQESPSSlGSLPEKDLAEQTISSGEPPVATGAVLPA 223
Cdd:PRK12323 529 PATADPDDAFETLAPAPAA-APAPRAAAATEPVVAPRPPRASASGLPD 575
RGS_SNX13 cd08719
Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein; ...
454-555 4.41e-07

Regulator of G protein signaling (RGS) domain found in the Sorting Nexin 13 (SNX13) protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the SNX13 (Sorting Nexin 13) protein, a member of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. The RGS-domain of SNX13 plays a major role through attenuation of Galphas-mediated signaling and regulates endocytic trafficking and degradation of the epidermal growth factor receptor. Snx13-null mice were embryonic lethal around midgestation which supports an essential role for SNX13 in mouse development and regulation of endocytosis dynamics.


Pssm-ID: 188674  Cd Length: 135  Bit Score: 49.33  E-value: 4.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 454 LEVFQAFLRTEFSEENLEFWLACEDFK--------KVKSQSKMA------------AKAKKIFAEFIAIQACKEVNLDSY 513
Cdd:cd08719    8 LSYFIDFMQSVGGQAYLFFWLTVEGYRvsaeqqlsELHLRQRGGehqrsdvyemlrAAALNIYDQYLSEKASPRVPLDDS 87
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568927000 514 TREHTKENLQSIT--RGCFDLAQKRIFGLMEKDS--YPRFLRSDLY 555
Cdd:cd08719   88 LVKKLLNRLRNDTpsDLWFDDIQQKVFDIMQEDErfYPAFKKSPAY 133
PHA03247 PHA03247
large tegument protein UL36; Provisional
25-231 7.83e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 7.83e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   25 APSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDlPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPRKDSSG 104
Cdd:PHA03247 2591 APPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPD-PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  105 QEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQG--SSPTTELPSCQGLPAGQESTSQDPLLSQEPPVIPESSASV 182
Cdd:PHA03247 2670 LGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTpePAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPA 2749
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568927000  183 QKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVAT---GAVLPASRPNFVIP 231
Cdd:PHA03247 2750 TPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTrpaVASLSESRESLPSP 2801
PHA03247 PHA03247
large tegument protein UL36; Provisional
12-226 1.10e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   12 PLVEGKGPGAEEPAPSKNP---SPGQELPPGQDLPPSKDPSPSQE-----LPAGQDLPPSKDPSPSQELPAGQDLP---- 79
Cdd:PHA03247 2694 SLTSLADPPPPPPTPEPAPhalVSATPLPPGPAAARQASPALPAApappaVPAGPATPGGPARPARPPTTAGPPAPappa 2773
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   80 -PSKDPSPSQELPVGQDLpprkdSSGQEAAPGPESPS-----------SEDIATCPKPPQSPETSTSKDSPPGQGSSPTT 147
Cdd:PHA03247 2774 aPAAGPPRRLTRPAVASL-----SESRESLPSPWDPAdppaavlapaaALPPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  148 ELPSCQGLPAGQESTSQDPllSQEPPVIPESSASVQ-KRLPSQESPSSLGSLPEKDLAEQ---TISSGEPPVATGAVLPA 223
Cdd:PHA03247 2849 SLPLGGSVAPGGDVRRRPP--SRSPAAKPAAPARPPvRRLARPAVSRSTESFALPPDQPErppQPQAPPPPQPQPQPPPP 2926

                  ...
gi 568927000  224 SRP 226
Cdd:PHA03247 2927 PQP 2929
RGS-like_1 cd08734
Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 1; These ...
455-551 1.45e-06

Uncharacterized Regulator of G protein Signaling (RGS) domain subfamily, child 1; These uncharacterized RGS-like domains consists largely of hypothetical proteins. The RGS domain is an essential part of the Regulator of G-protein Signaling (RGS) protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. As a major G-protein regulator, the RGS domain containing proteins that are involved in many crucial cellular processes. RGS proteins play critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. Several RGS proteins can fine-tune immune responses, while others play an important role in neuronal signal modulation. Some RGS proteins are the principal elements needed for proper vision.


Pssm-ID: 188688  Cd Length: 109  Bit Score: 47.08  E-value: 1.45e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 455 EVFQAFLRTEFSEENLEFWLACEDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNL-DSYTRE--HTKENLQSITR---- 527
Cdd:cd08734    6 PLFGFSAESDFSGENLSFLTLVKEYKRLSNPAEKFTLASKIYKEFISSESPFQINIsSAMLRRldNDFELLTGAFAnvds 85
                         90       100
                 ....*....|....*....|....
gi 568927000 528 GCFDLAQKRIFGLMEKDSYPRFLR 551
Cdd:cd08734   86 GLNTPFNEEISKIEASDLYPAFVK 109
PHA03247 PHA03247
large tegument protein UL36; Provisional
24-221 2.09e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 2.09e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   24 PAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPrkdss 103
Cdd:PHA03247 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP----- 2969
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  104 GQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSS---------PTTELPSCQGLPAGQESTSQDPLLSQEPPV 174
Cdd:PHA03247 2970 GRVAVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSlalheetdpPPVSLKQTLWPPDDTEDSDADSLFDSDSER 3049
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568927000  175 IPESSASV---QKRLPSQESPSSlgSLPEKDLAEQTISS-GEPPVATGAVL 221
Cdd:PHA03247 3050 SDLEALDPlppEPHDPFAHEPDP--ATPEAGARESPSSQfGPPPLSANAAL 3098
PHA03247 PHA03247
large tegument protein UL36; Provisional
16-232 2.81e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 2.81e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   16 GKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQ--ELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPsqeLPVG 93
Cdd:PHA03247 2642 PPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSppQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHA---LVSA 2718
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   94 QDLPPRKDSSGQEAAPGPESPSsediatcpkPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLlsQEPP 173
Cdd:PHA03247 2719 TPLPPGPAAARQASPALPAAPA---------PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRL--TRPA 2787
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568927000  174 VIPESSASVQKRLPSQESPSSLGSLPEKDL--AEQTISSGEPPVATGAVLPASRPNFVIPE 232
Cdd:PHA03247 2788 VASLSESRESLPSPWDPADPPAAVLAPAAAlpPAASPAGPLPPPTSAQPTAPPPPPGPPPP 2848
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
6-221 2.98e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 2.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   6 ADEKEMPLVEGKGPGAEEPAPSKNPSPGQ---ELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSK 82
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPAAPAAPAApaaPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  83 DPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPscqGLPAGQEST 162
Cdd:PRK07764 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP---PEPDDPPDP 751
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 568927000 163 SQDPLLSQEPPVIPESSASVQKRLPSQESPsslgslPEKDLAEQTISSGEPPVATGAVL 221
Cdd:PRK07764 752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSE------EEEMAEDDAPSMDDEDRRDAEEV 804
RGS_FLBA cd08708
Regulator of G protein signaling (RGS) domain found in the FLBA (Fluffy Low BrlA) protein; The ...
457-556 3.15e-06

Regulator of G protein signaling (RGS) domain found in the FLBA (Fluffy Low BrlA) protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the FLBA (Fluffy Low BrlA) protein. FLBA is a member of the RGS protein family, a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes such as regulation of intracellular trafficking, glial differentiation, embryonic axis formation, skeletal and muscle development, and cell migration during early embryogenesis. RGS proteins play a critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. Deactivation of the G-protein signaling controlled by the RGS domain accelerates the GTPase activity of the alpha subunit by hydrolysis of GTP to GDP which results in reassociation of the alpha-subunit with the beta-gamma-dimer and thereby inhibition of downstream activity. As a major G-protein regulator, RGS domain containing proteins are involved in many crucial cellular processes. The RGS domain of the FLBA protein antagonizes G protein signaling to block proliferation and allow development. It is required for control of mycelial proliferation and activation of asexual sporulation in yeast.


Pssm-ID: 188663  Cd Length: 148  Bit Score: 46.99  E-value: 3.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 457 FQAFLRTEFSEENLEFWLACEDFKK--------VKSQSKMAAK----------AKKIFAEFIAIQACKEVNLDSYTRE-- 516
Cdd:cd08708   15 FREHLEKEFCEENLSFYLEVKEFLKkmtilsklLDFKSSQAADedldreslaqAYHIYNTYLAPGSPCELNIDHNLRNri 94
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568927000 517 ----------HTKENLQSI--TRGCFDLAQKRIF-GLMEKDSYPRFLRSDLYL 556
Cdd:cd08708   95 ttimtekivgEDDSMAESLqgVEALFEEAQNAVFkPLMAGDSVPKFLKQPEYL 147
PHA03247 PHA03247
large tegument protein UL36; Provisional
16-235 5.86e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 5.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   16 GKGPGAEEPAPSKNPSPGQELP-----PGQD------------LPPSKDPSPSQelPAGQDLPPSKD----------PSP 68
Cdd:PHA03247  266 DRAPETARGATGPPPPPEAAAPngaaaPPDGvwgaalagaplaLPAPPDPPPPA--PAGDAEEEDDEdgamevvsplPRP 343
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   69 SQELPAG---QDLPPSKDPSPSQELPVGQDLPPRKD--SSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGS 143
Cdd:PHA03247  344 RQHYPLGfpkRRRPTWTPPSSLEDLSAGRHHPKRASlpTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPV 423
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  144 SPTTELPSCQGLPAGQESTSQDPLLSQEPPViPESSASVQKRLPSQESPSSLGSLPEKdlaeqtiSSGEPPVATGAVLPA 223
Cdd:PHA03247  424 PASAPPPPATPLPSAEPGSDDGPAPPPERQP-PAPATEPAPDDPDDATRKALDALRER-------RPPEPPGADLAELLG 495
                         250
                  ....*....|..
gi 568927000  224 SRPNFVIPEVRL 235
Cdd:PHA03247  496 RHPDTAGTVVRL 507
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
5-129 6.09e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 6.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   5 EADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDP 84
Cdd:PRK07764 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 568927000  85 SPS---QELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSP 129
Cdd:PRK07764 459 AAApsaQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
1-224 6.84e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 6.84e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    1 MFETEADEKEMPLVEGKGPGAEEPAPSKNPS------PGQELPPGQDLPPSKDPSPSQELPAGQDLPP-SKDPSPSQELP 73
Cdd:PHA03307  103 EGSPTPPGPSSPDPPPPTPPPASPPPSPAPDlsemlrPVGSPGPPPAASPPAAGASPAAVASDAASSRqAALPLSSPEET 182
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   74 AGQDLPPSKDPSPSQELPVGQDLPPRKDSSGQEAAPGPeSPSSEDIATCPKPPQSPETSTSKDSPPGQG--------SSP 145
Cdd:PHA03307  183 ARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSP-APAPGRSAADDAGASSSDSSSSESSGCGWGpenecplpRPA 261
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  146 TTELPSCQGLPAGQESTSQDPLLSQEPPVIPESSASVQ------KRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGA 219
Cdd:PHA03307  262 PITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSpsspgsGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAV 341

                  ....*
gi 568927000  220 VLPAS 224
Cdd:PHA03307  342 SPGPS 346
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
3-214 9.02e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 48.92  E-value: 9.02e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   3 ETEADEKEMPlveGKGPGAEEPAPSknpSPGQELPPGQDLPPSKDPSPSQElpagqdlppSKDPSPSQELPAGQDLPPSK 82
Cdd:PTZ00449 501 EEDSDKHDEP---PEGPEASGLPPK---APGDKEGEEGEHEDSKESDEPKE---------GGKPGETKEGEVGKKPGPAK 565
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  83 DPSPSQeLPVGQDLPPrkdssgqeaapGPESPSSediatcPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPagqest 162
Cdd:PTZ00449 566 EHKPSK-IPTLSKKPE-----------FPKDPKH------PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIP------ 621
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 568927000 163 sqdpllsqEPPVIPESSASvQKRLPSQESPSSlgslPEKDLAEQTISSGEPP 214
Cdd:PTZ00449 622 --------KSPKRPESPKS-PKRPPPPQRPSS----PERPEGPKIIKSPKPP 660
PHA03247 PHA03247
large tegument protein UL36; Provisional
8-192 9.20e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.78  E-value: 9.20e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    8 EKEMPLVEGKGP---GAEEPAPSKNPSPGQELP-------PGQDLPP----------------SKDPSPsqelPAGQDLP 61
Cdd:PHA03247 2485 EARFPFAAGAAPdpgGGGPPDPDAPPAPSRLAPailpdepVGEPVHPrmltwirgleelasddAGDPPP----PLPPAAP 2560
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   62 PskdPSPSQELPagqdlPPSKDPSPSQelPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQ 141
Cdd:PHA03247 2561 P---AAPDRSVP-----PPRPAPRPSE--PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568927000  142 GSSPTTELPscQGLPAGQESTSQDPLLSQEPPVIPESSASVQKRLPSQESP 192
Cdd:PHA03247 2631 PSPAANEPD--PHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
23-192 1.19e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 48.63  E-value: 1.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   23 EPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQElpvgqdlpPRKDS 102
Cdd:PHA03307  271 EASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSR--------GAAVS 342
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  103 SGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTteLPSCQGLPAGQESTSQDP--LLSQEPPVIPESSA 180
Cdd:PHA03307  343 PGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRPT--RRRARAAVAGRARRRDATgrFPAGRPRPSPLDAG 420
                         170
                  ....*....|..
gi 568927000  181 SVQKRLPSQESP 192
Cdd:PHA03307  421 AASGAFYARYPL 432
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
5-201 1.66e-05

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 47.76  E-value: 1.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   5 EADEKEMPLVEGKGPGAEEPAPSKNP-SPGQELPPGQDLPPSKDPSPsqELPAGQDLP-----------PSKDPSP---- 68
Cdd:PTZ00449 566 EHKPSKIPTLSKKPEFPKDPKHPKDPeEPKKPKRPRSAQRPTRPKSP--KLPELLDIPkspkrpespksPKRPPPPqrps 643
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  69 SQELPAGQDLPPSKDPSPSQELPVGQDLPPR-KDSSGQEAA---------------------PGPESPSSEDIATCPKPP 126
Cdd:PTZ00449 644 SPERPEGPKIIKSPKPPKSPKPPFDPKFKEKfYDDYLDAAAksketkttvvldesfesilkeTLPETPGTPFTTPRPLPP 723
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 127 QSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQ-----ESTSQDPL------LSQEPPVIPES----SASVQKRLPSQES 191
Cdd:PTZ00449 724 KLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEErtffhETPADTPLpdilaeEFKEEDIHAETgepdEAMKRPDSPSEHE 803
                        250
                 ....*....|...
gi 568927000 192 PSSLG---SLPEK 201
Cdd:PTZ00449 804 DKPPGdhpSLPKK 816
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
12-226 1.81e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 47.86  E-value: 1.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   12 PLVEGKGPGAEEPAPSKNPSPGQELPPGQDLP---PSKDPSP----SQELPAGQDlPPSKDPSPSQELPAGQD------- 77
Cdd:PHA03307  181 ETARAPSSPPAEPPPSTPPAAASPRPPRRSSPisaSASSPAPapgrSAADDAGAS-SSDSSSSESSGCGWGPEnecplpr 259
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   78 LPPSKDPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTT----ELPSCQ 153
Cdd:PHA03307  260 PAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTssssESSRGA 339
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568927000  154 GLPAGQESTSQDPLLSQEPPVIPES-----SASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVatgavLPASRP 226
Cdd:PHA03307  340 AVSPGPSPSRSPSPSRPPPPADPSSprkrpRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGR-----FPAGRP 412
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
14-249 1.89e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 47.67  E-value: 1.89e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  14 VEGKGPGAEEPAPSKNPSPGQElPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVG 93
Cdd:PRK07764 587 VVGPAPGAAGGEGPPAPASSGP-PEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDG 665
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  94 QDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPScqglpAGQESTSQDPLLSQEPP 173
Cdd:PRK07764 666 GDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQ-----AAQGASAPSPAADDPVP 740
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000 174 VIPESSASVQKRLPSQESPSSLGSlpekdlaeqtissgEPPVATGAVLPASRPNFviPEVRL-DNAYSQLDGAHGGS 249
Cdd:PRK07764 741 LPPEPDDPPDPAGAPAQPPPPPAP--------------APAAAPAAAPPPSPPSE--EEEMAeDDAPSMDDEDRRDA 801
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
22-193 1.92e-05

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 47.84  E-value: 1.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   22 EEPAPSKNPSPGQElppGQDLPPSKDPSPSQELPAGQdlPPSKDPSPSQELPAGQDLPPSKDPSP----SQELP--VGQD 95
Cdd:pfam03154 373 KHPPHLSGPSPFQM---NSNLPPPPALKPLSSLSTHH--PPSAHPPPLQLMPQSQQLPPPPAQPPvltqSQSLPppAASH 447
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   96 LPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQgsSPTTELPSCQGLPAGQESTSQDPLLSQEPPvi 175
Cdd:pfam03154 448 PPTSGLHQVPSQSPFPQHPFVPGGPPPITPPSGPPTSTSSAMPGIQ--PPSSASVSSSGPVPAAVSCPLPPVQIKEEA-- 523
                         170
                  ....*....|....*...
gi 568927000  176 PESSASVQKRLPSQESPS 193
Cdd:pfam03154 524 LDEAEEPESPPPPPRSPS 541
PHA03247 PHA03247
large tegument protein UL36; Provisional
18-224 2.33e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   18 GPGAEEPAPSKNPSPGQELPPgqdlpPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQ--- 94
Cdd:PHA03247 2550 DPPPPLPPAAPPAAPDRSVPP-----PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDThap 2624
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   95 DLPPRKDSSGQEAAPGPE---SPSSEDIATCPKPPQS--PETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPlLS 169
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPpptVPPPERPRDDPAPGRVsrPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADP-PP 2703
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568927000  170 QEPPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTissgePPVATGAVLPAS 224
Cdd:PHA03247 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP-----PAVPAGPATPGG 2753
PHA03247 PHA03247
large tegument protein UL36; Provisional
20-232 6.09e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.08  E-value: 6.09e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   20 GAEEPAPSKNPSPGQelPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPR 99
Cdd:PHA03247 2866 PPSRSPAAKPAAPAR--PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL 2943
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  100 KDSSGQEAAPGPE--SPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTelPSCQGLPAGQESTSQDPLLSQEPPVIPE 177
Cdd:PHA03247 2944 APTTDPAGAGEPSgaVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASST--PPLTGHSLSRVSSWASSLALHEETDPPP 3021
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 568927000  178 SSASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPASRPNFVIPE 232
Cdd:PHA03247 3022 VSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPE 3076
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
18-223 1.08e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 45.14  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   18 GPGAEEPAPSKN----PSPGQELPPGQdlPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPS-KDPSPSQelpV 92
Cdd:pfam03154 312 GPSPAAPGQSQQrihtPPSQSQLQSQQ--PPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHlSGPSPFQ---M 386
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   93 GQDLPPRKDSSGQEAAPGPESPSSEdiatcPKP----PQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGqestSQDPLL 168
Cdd:pfam03154 387 NSNLPPPPALKPLSSLSTHHPPSAH-----PPPlqlmPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTS----GLHQVP 457
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568927000  169 SQEP----PVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPA 223
Cdd:pfam03154 458 SQSPfpqhPFVPGGPPPITPPSGPPTSTSSAMPGIQPPSSASVSSSGPVPAAVSCPLPP 516
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
16-245 1.27e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 44.84  E-value: 1.27e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  16 GKGPGAEEPA--PSKNPSPGQELPPGQD-----------LPPSKDPSPSQELPAG--QDLPPSKDPSPSQELPAGQDlpP 80
Cdd:PRK07003 365 GGAPGGGVPArvAGAVPAPGARAAAAVGasavpavtavtGAAGAALAPKAAAAAAatRAEAPPAAPAPPATADRGDD--A 442
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  81 SKDPSPSQelpVGQDLPPRKDSSGQEAAPGPESPSSEDIATcpkPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQE 160
Cdd:PRK07003 443 ADGDAPVP---AKANARASADSRCDERDAQPPADSGSASAP---ASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAA 516
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 161 STSQDPllsqEPPVIPESSASVQKRLPSQESPSSLGSLPEKDL---AEQTISSGEPPVATGAVLPA-----------SRP 226
Cdd:PRK07003 517 SREDAP----AAAAPPAPEARPPTPAAAAPAARAGGAAAALDVlrnAGMRVSSDRGARAAAAAKPAaapaaapkpaaPRV 592
                        250
                 ....*....|....*....
gi 568927000 227 NFVIPEVRLDNAYSQLDGA 245
Cdd:PRK07003 593 AVQVPTPRARAATGDAPPN 611
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
73-197 1.73e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  73 PAGQDLPPSKDPSPSQELPVGQDLPPrkDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSC 152
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAP--AAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSA 464
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 568927000 153 QGLPAGQESTSQDPLLSQEPPVIPESSASVqkRLPSQESPSSLGS 197
Cdd:PRK07764 465 QPAPAPAAAPEPTAAPAPAPPAAPAPAAAP--AAPAAPAAPAGAD 507
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
12-206 1.83e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.48  E-value: 1.83e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  12 PLVEGKGPGAEEPAPSKNPSPGqelppgqdlpPSKDPSPSQELPAGQDLPPskdpspsqelPAGQDLPPSKDPSPSQELP 91
Cdd:PRK12323 432 ALAAARQASARGPGGAPAPAPA----------PAAAPAAAARPAAAGPRPV----------AAAAAAAPARAAPAAAPAP 491
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  92 VGQDLPPRKDSSGQEAAPGPespssEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAgqestSQDPLLSQE 171
Cdd:PRK12323 492 ADDDPPPWEELPPEFASPAP-----AQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPR-----AAAATEPVV 561
                        170       180       190
                 ....*....|....*....|....*....|....*
gi 568927000 172 PPVIPESSASVQKRLPSQESPSSLGSLPEKDLAEQ 206
Cdd:PRK12323 562 APRPPRASASGLPDMFDGDWPALAARLPVRGLAQQ 596
dnaA PRK14086
chromosomal replication initiator protein DnaA;
19-166 2.22e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 44.05  E-value: 2.22e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  19 PGAEEPAPSKNPSPG---------QELPPGQDLPPSKDPSPSQELPAGQ--DLPPSKDPSPSQELPAG----QDLPPSKD 83
Cdd:PRK14086 106 SEPELPRPGRRPYEGyggpraddrPPGLPRQDQLPTARPAYPAYQQRPEpgAWPRAADDYGWQQQRLGfpprAPYASPAS 185
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  84 PSPSQEL---PVGQDLP----PRKDSSGQEaaPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTT-ELPSCQGL 155
Cdd:PRK14086 186 YAPEQERdrePYDAGRPeydqRRRDYDHPR--PDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVpIRPSAPGP 263
                        170
                 ....*....|.
gi 568927000 156 PAGQESTSQDP 166
Cdd:PRK14086 264 LAAQPAPAPGP 274
ECM1 pfam05782
Extracellular matrix protein 1 (ECM1); This family consists of several eukaryotic ...
21-145 2.31e-04

Extracellular matrix protein 1 (ECM1); This family consists of several eukaryotic extracellular matrix protein 1 (ECM1) sequences. ECM1 has been shown to regulate endochondral bone formation, stimulate the proliferation of endothelial cells and induce angiogenesis. Mutations in the ECM1 gene can cause lipoid proteinosis, a disorder which causes generalized thickening of skin, mucosae and certain viscera. Classical features include beaded eyelid papules and laryngeal infiltration leading to hoarseness.


Pssm-ID: 461739  Cd Length: 518  Bit Score: 44.06  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   21 AEEPAPSKNPS-PGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPskdPSPSQELPVGQDLPPR 99
Cdd:pfam05782   4 AAPPSPPQTRGlPVDHPDTSQHDPPFEGQSEVQPPPSQEAIPVQEEELPPPQLPVEKKVDP---PLPQEAIPLQEELPPP 80
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 568927000  100 KDSSGQEAApGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSP 145
Cdd:pfam05782  81 QLPIEQKEI-DPPFPQQEEITPSKQREEKPAPLVGQGHPEPESWNP 125
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
23-151 3.84e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 3.84e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  23 EPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQDLPPRKDS 102
Cdd:PRK07764 379 ERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPP 458
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 568927000 103 SGQ-EAAPGPESPSSEdiATCPKPPQSPETSTSKDSPPGQGSSPTTELPS 151
Cdd:PRK07764 459 AAApSAQPAPAPAAAP--EPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGA 506
PHA03378 PHA03378
EBNA-3B; Provisional
26-226 4.25e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 43.52  E-value: 4.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  26 PSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQD--LPPSKDPSPSQELPA--GQDLPPSKDPSPSQElPVGQDLPPRKD 101
Cdd:PHA03378 649 PTPHQPPQVEITPYKPTWTQIGHIPYQPSPTGANtmLPIQWAPGTMQPPPRapTPMRPPAAPPGRAQR-PAAATGRARPP 727
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 102 SSGQ------EAAPGPESPSsediATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVI 175
Cdd:PHA03378 728 AAAPgrarppAAAPGRARPP----AAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAG 803
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 568927000 176 PESSASVQKRLPSQESPSslgSLPEKDLAEQTISSGEPPVATGAVLPASRP 226
Cdd:PHA03378 804 PTSMQLMPRAAPGQQGPT---KQILRQLLTGGVKRGRPSLKKPAALERQAA 851
RGS_RGS22_1 cd08731
Regulator of G protein signaling domain RGS_RGS22_1; The RGS (Regulator of G-protein Signaling) ...
451-555 5.02e-04

Regulator of G protein signaling domain RGS_RGS22_1; The RGS (Regulator of G-protein Signaling) domain found in the RGS22 protein, a member of the RA/RGS subfamily of the RGS protein family, which is a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins play critical regulatory role as GTPase activating proteins (GAPs) of the heterotrimeric G-protein G-alpha-subunits. RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. RGS22 contains at least 3 copies of the RGS domain in vertebrata and exists in multiple splicing variants. RGS22 is predominantly expressed in testis and believed to play an important role in spermatogenesis.


Pssm-ID: 188686  Cd Length: 125  Bit Score: 40.40  E-value: 5.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 451 KYGLEVFQAFLRTEFSEENLEFWLACEDFKKvKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQS------ 524
Cdd:cd08731    5 EQGLEVFKAFLLNTRGEKLFVFWLDVEPYKA-KDKVEAYLQSKRIFAKYQVASTKRELLPPSAEPLRTRVLNAAakklep 83
                         90       100       110
                 ....*....|....*....|....*....|....
gi 568927000 525 ITRGCFDLAQKRIFGLME---KDSYPRFLRSDLY 555
Cdd:cd08731   84 KINKNFARIQLDIFRGLEslvLDHMTRTAFPQFL 117
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
18-140 5.03e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 43.13  E-value: 5.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  18 GPGAEEPAP---SKNPSPGQELPpgQDLPPSKDPSPSQELPAGQdlPPSKDPSPSqeLPaGQDLPPSkdpspsqelPVGQ 94
Cdd:PRK14959 383 GSAAEGPASggaATIPTPGTQGP--QGTAPAAGMTPSSAAPATP--APSAAPSPR--VP-WDDAPPA---------PPRS 446
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 568927000  95 DLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPG 140
Cdd:PRK14959 447 GIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSG 492
dnaA PRK14086
chromosomal replication initiator protein DnaA;
16-141 5.11e-04

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 42.89  E-value: 5.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  16 GKGPGAEEPAPSKNPSPGqeLPPGQDLPPSKDPSPSQEL---PAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPV 92
Cdd:PRK14086 156 GAWPRAADDYGWQQQRLG--FPPRAPYASPASYAPEQERdrePYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPP 233
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 568927000  93 GQDLPPRkdssgqEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQ 141
Cdd:PRK14086 234 GAGHVHR------GGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPGE 276
PHA03247 PHA03247
large tegument protein UL36; Provisional
5-200 7.19e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 7.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000    5 EADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSK---------DPSPSQELPAG 75
Cdd:PHA03247 2912 QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRvavprfrvpQPAPSREAPAS 2991
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   76 QDLPPSKDPSP-----SQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETStSKDSPPGQGSSPTTELP 150
Cdd:PHA03247 2992 STPPLTGHSLSrvsswASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLE-ALDPLPPEPHDPFAHEP 3070
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 568927000  151 ScqglPAGQESTSQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPE 200
Cdd:PHA03247 3071 D----PATPEAGARESPSSQFGPPPLSANAALSRRYVRSTGRSALAVLIE 3116
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
3-173 9.45e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 9.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   3 ETEADEKEMPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPA-GQDLPPS 81
Cdd:PRK07003 465 ERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTpAAAAPAA 544
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  82 KDPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSkdSPPGQGSSPTTELPSCQGLPAGQES 161
Cdd:PRK07003 545 RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVP--TPRARAATGDAPPNGAARAEQAAES 622
                        170
                 ....*....|..
gi 568927000 162 TSQDPLLSQEPP 173
Cdd:PRK07003 623 RGAPPPWEDIPP 634
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
17-155 1.53e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 468478 [Multi-domain]  Cd Length: 440  Bit Score: 41.04  E-value: 1.53e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  17 KGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLP---PSKDPSPSQELPVG 93
Cdd:NF038329 247 DGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKdglPGKDGKDGQPGKDG 326
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568927000  94 QDLPPRKDSS-GQEAAPGPESPSSEDIAT-CPKPPQSPetSTSKDsppgqgSSPTTELPSCQGL 155
Cdd:NF038329 327 LPGKDGKDGQpGKPAPKTPEVPQKPDTAPhTPKTPQIP--GQSKD------VTPAPQNPSNRGL 382
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
19-139 1.58e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 41.39  E-value: 1.58e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  19 PGAEEPAPsknPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPVGQ-DLP 97
Cdd:PRK07994 361 PAAPLPEP---EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQgATK 437
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 568927000  98 PRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPP 139
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479
PLN03209 PLN03209
translocon at the inner envelope of chloroplast subunit 62; Provisional
14-188 1.62e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional


Pssm-ID: 178748 [Multi-domain]  Cd Length: 576  Bit Score: 41.45  E-value: 1.62e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  14 VEGKGPGAEE---PAPSKNPSPGQELPPGQDLPP---SKDPSPSQELPAGQDLPPSKDPSPSQ--------------ELP 73
Cdd:PLN03209 328 VPPKESDAADgpkPVPTKPVTPEAPSPPIEEEPPqpkAVVPRPLSPYTAYEDLKPPTSPIPTPpssspassksvdavAKP 407
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  74 AGQDLPPSKDPSPS------------QELPVG-----QDLPPRKDSSgqeaaPGPESPSSEDIATCPKPPQSPET----- 131
Cdd:PLN03209 408 AEPDVVPSPGSASNvpevepaqveakKTRPLSpyaryEDLKPPTSPS-----PTAPTGVSPSVSSTSSVPAVPDTapata 482
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000 132 STSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQEPPVIPESSASVQKRLPS 188
Cdd:PLN03209 483 ATDAAAPPPANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPT 539
Pneumo_att_G pfam05539
Pneumovirinae attachment membrane glycoprotein G;
27-175 1.78e-03

Pneumovirinae attachment membrane glycoprotein G;


Pssm-ID: 114270 [Multi-domain]  Cd Length: 408  Bit Score: 40.80  E-value: 1.78e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   27 SKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSKDPSP-------SQELPVGQDLPP- 98
Cdd:pfam05539 197 SQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPPSQRGPSGSPQHPPSTTSQdqsttgdGQEHTQRRKTPPa 276
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568927000   99 --RKDSSGQEAAPGPESPSSEDIATCPKPpqspeTSTSKDSPPGQGSSPttelPSCQGLPAGQESTSQDPLLSQEPPVI 175
Cdd:pfam05539 277 tsNRRSPHSTATPPPTTKRQETGRPTPRP-----TATTQSGSSPPHSSP----PGVQANPTTQNLVDCKELDPPKPNSI 346
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
106-234 2.19e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 40.91  E-value: 2.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 106 EAAPGPESP--SSEDIATCPKPPQSPETSTSKDSPPGQGSSPTtelPSCQGLPAGQESTSqdpllsqePPVIPESSASVQ 183
Cdd:PRK14971 367 DDASGGRGPkqHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAA---QPSAPQSATQPAGT--------PPTVSVDPPAAV 435
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 568927000 184 KRLPSQESPSSLG---SLPEKDLAEQTISSGEPPVATGAVLPASRPNFVIPEVR 234
Cdd:PRK14971 436 PVNPPSTAPQAVRpaqFKEEKKIPVSKVSSLGPSTLRPIQEKAEQATGNIKEAP 489
PRK14959 PRK14959
DNA polymerase III subunits gamma and tau; Provisional
11-147 2.21e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184923 [Multi-domain]  Cd Length: 624  Bit Score: 40.82  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  11 MPLVEGKGPGAEEPAPSKNPSPGQELPPGQDLPPskdpsPSQELPagQDLPPSKDPSPSQELPAGQdlPPSKDPSPSqeL 90
Cdd:PRK14959 366 MPVESLRPSGGGASAPSGSAAEGPASGGAATIPT-----PGTQGP--QGTAPAAGMTPSSAAPATP--APSAAPSPR--V 434
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000  91 PvGQDLPPRKDSSGQEAAPGPESPSsediaTCPKPPQSPETSTSKDSPPGQGSSPTT 147
Cdd:PRK14959 435 P-WDDAPPAPPRSGIPPRPAPRMPE-----ASPVPGAPDSVASASDAPPTLGDPSDT 485
PspC_subgroup_2 NF033839
pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...
17-202 3.33e-03

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.


Pssm-ID: 468202 [Multi-domain]  Cd Length: 557  Bit Score: 40.14  E-value: 3.33e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  17 KGPGAEEPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQElPAGQDLPPSKDPSPSQELPVGQ-- 94
Cdd:NF033839 290 KKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVK-PQLETPKPEVKPQPEKPKPEVKpq 368
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  95 ------DLPPRKDSSGQEAAPGPESPSSE--DIATCPKPPQSPETSTSKDSPPGQGSSPTTEL--------PSCQGLPAG 158
Cdd:NF033839 369 pekpkpEVKPQPETPKPEVKPQPEKPKPEvkPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVkpqpekpkPEVKPQPEK 448
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 568927000 159 QESTSQDPLLSQEPPVIPESSASVQKRLPSQESPSSLGSLPEKD 202
Cdd:NF033839 449 PKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPDNSKPQAD 492
PHA03379 PHA03379
EBNA-3A; Provisional
19-228 3.41e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 40.43  E-value: 3.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  19 PGAEEPAPSKNPSPGQELPPGQDLPP-------SKDPSPSQELPAGqdlpPSKDPSPSQELPAG-QDLPPSKDPSPSqel 90
Cdd:PHA03379 428 PQSLETATSHGSAQVPEPPPVHDLEPgplhdqhSMAPCPVAQLPPG----PLQDLEPGDQLPGVvQDGRPACAPVPA--- 500
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  91 PVGQDLPPRKDSSGQEA--APGPESPSSEDIATCPKP------PQSPETSTSKDSPPGQGSSPTTELPSCQG---LPAGQ 159
Cdd:PHA03379 501 PAGPIVRPWEASLSQVPgvAFAPVMPQPMPVEPVPVPtvalerPVCPAPPLIAMQGPGETSGIVRVRERWRPapwTPNPP 580
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568927000 160 ESTSQDPL---LSQEPPVIPESSASVQKRLP-----SQESPSSLGSLPEKDLAEQTISSGEPPVATGAVLPASRPNF 228
Cdd:PHA03379 581 RSPSQMSVrdrLARLRAEAQPYQASVEVQPPqltqvSPQQPMEYPLEPEQQMFPGSPFSQVADVMRAGGVPAMQPQY 657
PHA03169 PHA03169
hypothetical protein; Provisional
3-145 3.44e-03

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 39.95  E-value: 3.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   3 ETEADEKEMPLVEGKGPGAEEpAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGQDLPPSK 82
Cdd:PHA03169 112 EELASGLSPENTSGSSPESPA-SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSP 190
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568927000  83 DPSPSQELPVGQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSP 145
Cdd:PHA03169 191 GPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSH 253
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
19-154 3.93e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 40.08  E-value: 3.93e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  19 PGAEEPAPSknPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPSKDPSPSQELPAGqdLPPSKDPSPSQELPVGqdlPP 98
Cdd:PRK14951 366 PAAAAEAAA--PAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAA--APPAPVAAPAAAAPAA---AP 438
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 568927000  99 RKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQG 154
Cdd:PRK14951 439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
12-192 3.93e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 40.14  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   12 PLVEGKGPGAEEPAPSKNPSPGQELPPGqdlPPSKDPS-PSQELPAGQDLPPSKDP--SPSQELPAGQDLPPSKDPSPSQ 88
Cdd:pfam03154 171 PPVLQAQSGAASPPSPPPPGTTQAATAG---PTPSAPSvPPQGSPATSQPPNQTQStaAPHTLIQQTPTLHPQRLPSPHP 247
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   89 ELpvgQDLPPRKDSSGQEAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPgQGSSPTTELPSCQGLPAGQestSQDPLL 168
Cdd:pfam03154 248 PL---QPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVPP-QPFPLTPQSSQSQVPPGPS---PAAPGQ 320
                         170       180
                  ....*....|....*....|....
gi 568927000  169 SQEPPVIPESSASVQKRLPSQESP 192
Cdd:pfam03154 321 SQQRIHTPPSQSQLQSQQPPREQP 344
RGS_AKAP2_1 cd08735
Regulator of G protein signaling (RGS) domain 1 found in the A-kinase anchoring protein, ...
477-555 4.04e-03

Regulator of G protein signaling (RGS) domain 1 found in the A-kinase anchoring protein, D-AKAP2; The RGS (Regulator of G-protein Signaling) domain is an essential part of the D-AKAP2 (A-kinase anchoring protein), a member of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. D-AKAP2 contains two RGS domains which play an important role in spatiotemporal localization of cAMP-dependent PKA (cyclic AMP-dependent protein kinase) that regulates many different signaling pathways by phosphorylation of target proteins. This cd contains the first RGS domain.


Pssm-ID: 188689 [Multi-domain]  Cd Length: 171  Bit Score: 38.59  E-value: 4.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 477 EDFKKVKSQSKMAAKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQS----ITRGCFDLAQKRIFGLMEKDSYPRFLRS 552
Cdd:cd08735   87 TDDDDEKSMKSIERDAVSIYTKYISPDAAKPIPITEEIRNDIVAKICGedgqVDPNCFVEAQSFVFSAMEQDHFTEFLRS 166

                 ...
gi 568927000 553 DLY 555
Cdd:cd08735  167 HFF 169
RGS_SNX14 cd08722
Regulator of G protein signaling (RGS) domain found in the Sorting Nexin14 (SNX14) protein; ...
457-557 5.72e-03

Regulator of G protein signaling (RGS) domain found in the Sorting Nexin14 (SNX14) protein; The RGS (Regulator of G-protein Signaling) domain is an essential part of the SNX14 (Sorting Nexin14) protein, a member of the RGS protein family. They are a diverse group of multifunctional proteins that regulate cellular signaling events downstream of G-protein coupled receptors (GPCRs). RGS proteins regulate many aspects of embryonic development such as glial differentiation, embryonic axis formation, skeletal and muscle development, cell migration during early embryogenesis, as well as apoptosis, cell proliferation, and modulation of cardiac development. SNX14 is believed to regulates membrane trafficking in motor neurons.


Pssm-ID: 188677  Cd Length: 127  Bit Score: 37.32  E-value: 5.72e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000 457 FQAFLRTEFSEENLEFWLACEDFKK------VKSQSKMA--AKAKKIFAEFIAIQACKEVNLDSYTREHTKENLQS---- 524
Cdd:cd08722   11 FMQFLKEEGAVHLLQFCLTVEDFNRrilnpdLTDEEKQSlhKEAQEIYKTYFLPEAPDRIHFPPDIVEEIKQILEGgpek 90
                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 568927000 525 ----ITRGCFDLAQKRIFGLMEKDSYPRFLRSDLYLD 557
Cdd:cd08722   91 ivklRTSRPLFEAYEHVYSLLESVFCPLFCHSDEYFI 127
PTZ00441 PTZ00441
sporozoite surface protein 2 (SSP2); Provisional
23-138 7.07e-03

sporozoite surface protein 2 (SSP2); Provisional


Pssm-ID: 240420 [Multi-domain]  Cd Length: 576  Bit Score: 39.18  E-value: 7.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  23 EPAPSKNPSPGQELPPGQDLPPSKDPSPSQELPAGQDLPPS-KDPSPSQEL-----PAGQDLPPSKD---PSPSQELPVG 93
Cdd:PTZ00441 285 EPEPLPVPAPVPPTPEDDNPRPTDDEFAVPNFNEGLDVPDNpQDPVPPPNEgkdgnPNEENLFPPGDdevPDESNVPPNP 364
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 568927000  94 QDLPPRKDSSGQEAAPGPESPSSEDIatcPKPPQSPETSTSKDSP 138
Cdd:PTZ00441 365 PNVPGGSNSEFSSDVENPPNPPNPDI---PEQEPNIPEDSNKEVP 406
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
13-104 7.09e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.16  E-value: 7.09e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000  13 LVE-GKGPGAEEPAPSKNPSPGQELPPgQDlPPSKDPSPSQELPAGQDLPPSKDPSP-SQELPAGQdlPPSKDPSPSQel 90
Cdd:PRK14954 370 LIElVRNDGGVAPSPAGSPDVKKKAPE-PD-LPQPDRHPGPAKPEAPGARPAELPSPaSAPTPEQQ--PPVARSAPLP-- 443
                         90
                 ....*....|....
gi 568927000  91 PVGQDLPPRKDSSG 104
Cdd:PRK14954 444 PSPQASAPRNVASG 457
PRK10263 PRK10263
DNA translocase FtsK; Provisional
12-231 9.36e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 38.91  E-value: 9.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   12 PLVEGKGPGAEEPAPSKNPSPGQELPPgqdlpPSKDPSPSQELPAGQDLPPSKDPSPSQELPAgQDLPPSKDPSPSQELP 91
Cdd:PRK10263  344 PPVASVDVPPAQPTVAWQPVPGPQTGE-----PVIAPAPEGYPQQSQYAQPAVQYNEPLQQPV-QPQQPYYAPAAEQPAQ 417
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927000   92 VGQDLPPRKDSSGQEA-APGPESPSSEDiATCPKPPQSPETSTSKDSPPGQGSSPTTELPSCQGLPAGQESTSQDPLLSQ 170
Cdd:PRK10263  418 QPYYAPAPEQPAQQPYyAPAPEQPVAGN-AWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVV 496
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568927000  171 E------PPV-----IPESSASVQKRLPSQESPsslgsLPEKDLAEQTISSGEPPVATGAVLPASRPNFVIP 231
Cdd:PRK10263  497 EetkparPPLyyfeeVEEKRAREREQLAAWYQP-----IPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSP 563
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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