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Conserved domains on  [gi|568935436|ref|XP_006534908|]
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tetratricopeptide repeat protein 28 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1291-1614 2.65e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.21  E-value: 2.65e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1291 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1370
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1371 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1446
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1447 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1520
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1521 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1599
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 568935436  1600 ----FSHPSNWAGFTLIGS 1614
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
848-1614 7.38e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


:

Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 147.81  E-value: 7.38e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  848 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 927
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  928 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1007
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1008 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1087
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1088 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1167
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1168 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1247
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1248 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1327
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1328 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1407
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1408 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1486
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1487 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1562
Cdd:COG4995   598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935436 1563 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1614
Cdd:COG4995   660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
416-675 1.17e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.95  E-value: 1.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  416 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 495
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  496 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 575
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  576 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 654
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 568935436  655 ASAYAALGTAYRMVQKYDKAL 675
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
692-901 1.46e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.31  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  692 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 771
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  772 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 851
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935436  852 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 901
Cdd:COG0457   140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
251-498 5.14e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.69  E-value: 5.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  251 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 330
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  331 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 410
Cdd:COG0457    72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  411 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 490
Cdd:COG0457   146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 568935436  491 IQSEARAL 498
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-302 2.20e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   30 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkMKLDKSPFVVVSVVGQELLT 109
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  110 AGHHGASVVVLEAALKIGtcslKLRGSVFSALSSAHWSLGNTEKStgymqqdLDVAKTLGDQTGEC-RAHGNLGSAFFSK 188
Cdd:COG2956    89 AGLLDRAEELLEKLLELD----PDDAEALRLLAEIYEQEGDWEKA-------IEVLERLLKLGPENaHAYCELAELYLEQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  189 GNYREALTNhrhqlvLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDDLSEARELGNmgaVYIAM 268
Cdd:COG2956   158 GDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPRLAE---LYEKL 225

                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935436  269 GDFENAVQCHEQHLRIAKDLGSKREEARAYSNLG 302
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLALADLLERKE 259
PHA03377 super family cl31823
EBNA-3C; Provisional
 1950-2334 2.64e-06

EBNA-3C; Provisional


The actual alignment was detected with superfamily member PHA03377:

Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.13  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1950 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2027
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2028 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2106
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2107 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2178
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2179 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2257
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2258 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2330
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                  ....
gi 568935436 2331 APRP 2334
Cdd:PHA03377  860 PPRL 863
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1291-1614 2.65e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.21  E-value: 2.65e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1291 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1370
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1371 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1446
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1447 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1520
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1521 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1599
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 568935436  1600 ----FSHPSNWAGFTLIGS 1614
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
848-1614 7.38e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 147.81  E-value: 7.38e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  848 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 927
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  928 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1007
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1008 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1087
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1088 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1167
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1168 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1247
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1248 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1327
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1328 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1407
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1408 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1486
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1487 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1562
Cdd:COG4995   598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935436 1563 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1614
Cdd:COG4995   660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
416-675 1.17e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.95  E-value: 1.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  416 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 495
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  496 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 575
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  576 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 654
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 568935436  655 ASAYAALGTAYRMVQKYDKAL 675
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
692-901 1.46e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.31  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  692 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 771
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  772 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 851
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935436  852 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 901
Cdd:COG0457   140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
251-498 5.14e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.69  E-value: 5.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  251 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 330
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  331 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 410
Cdd:COG0457    72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  411 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 490
Cdd:COG0457   146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 568935436  491 IQSEARAL 498
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 541-838 8.75e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.80  E-value: 8.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  541 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkYLLSLaqsLDNSQAKFRALGN 620
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHG 699
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  700 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYgnmgitkMNMNVMEDAIGYFEQqlaMLQQLSGNESVLDRg 778
Cdd:COG2956   149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlAELY-------LEQGDYEEAIAALER---ALEQDPDYLPALPR- 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  779 raygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 838
Cdd:COG2956   218 -----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 27-838 2.84e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.54  E-value: 2.84e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436    27 APAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQE 106
Cdd:TIGR02917  193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALV 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   107 LLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgn 180
Cdd:TIGR02917  271 DFQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------ 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   181 LGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGN 260
Cdd:TIGR02917  335 LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQ 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   261 MGAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIE 334
Cdd:TIGR02917  403 LGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHN 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   335 MRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQE 407
Cdd:TIGR02917  470 LLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILA 538

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   408 LSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIARE 487
Cdd:TIGR02917  539 LAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNE 592

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   488 LRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAK 566
Cdd:TIGR02917  593 AADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKP 666

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   567 DlHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgl 644
Cdd:TIGR02917  667 D-NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL-- 730

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   645 shhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQL 722
Cdd:TIGR02917  731 -------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   723 ElgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYE 802
Cdd:TIGR02917  798 K-----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLR 861

                          810       820       830
                   ....*....|....*....|....*....|....*..
gi 568935436   803 QYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 838
Cdd:TIGR02917  862 KAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR_12 pfam13424
Tetratricopeptide repeat;
735-810 1.45e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.45e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436   735 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 810
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 746-1049 2.75e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.25  E-value: 2.75e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   746 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 825
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   826 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 902
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   903 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 963
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   964 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1043
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305


                   ....*.
gi 568935436  1044 ASALFE 1049
Cdd:pfam17874  306 ALSLAE 311
TPR_12 pfam13424
Tetratricopeptide repeat;
416-487 1.78e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.78e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436   416 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 487
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
258-327 5.92e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 5.92e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935436   258 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 327
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-302 2.20e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   30 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkMKLDKSPFVVVSVVGQELLT 109
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  110 AGHHGASVVVLEAALKIGtcslKLRGSVFSALSSAHWSLGNTEKStgymqqdLDVAKTLGDQTGEC-RAHGNLGSAFFSK 188
Cdd:COG2956    89 AGLLDRAEELLEKLLELD----PDDAEALRLLAEIYEQEGDWEKA-------IEVLERLLKLGPENaHAYCELAELYLEQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  189 GNYREALTNhrhqlvLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDDLSEARELGNmgaVYIAM 268
Cdd:COG2956   158 GDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPRLAE---LYEKL 225

                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935436  269 GDFENAVQCHEQHLRIAKDLGSKREEARAYSNLG 302
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLALADLLERKE 259
TPR_12 pfam13424
Tetratricopeptide repeat;
214-287 2.31e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 2.31e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436   214 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 287
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 417-527 1.16e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  417 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 496
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568935436  497 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 527
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
PHA03377 PHA03377
EBNA-3C; Provisional
 1950-2334 2.64e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.13  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1950 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2027
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2028 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2106
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2107 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2178
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2179 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2257
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2258 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2330
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                  ....
gi 568935436 2331 APRP 2334
Cdd:PHA03377  860 PPRL 863
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1932-2254 2.82e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1932 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 2009
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2010 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2086
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2087 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2163
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2164 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2243
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734

                          330
                   ....*....|.
gi 568935436  2244 QSTPQPPRGPR 2254
Cdd:pfam05109  735 ATSPQAPSGQK 745
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 863-1099 3.33e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 52.61  E-value: 3.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  863 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 931
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  932 -DNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLVAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1005
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1006 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1082
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 568935436 1083 LGHHDEALAVAERGRTR 1099
Cdd:NF040586  660 LGDADEARELAREVLDR 676
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 779-803 1.76e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 1.76e-05
                            10        20
                    ....*....|....*....|....*
gi 568935436    779 RAYGNLGDCYEALGDYEEAIKYYEQ 803
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 536-567 4.68e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.68e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 568935436    536 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 567
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 295-327 4.81e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.81e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 568935436    295 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 327
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 376-584 7.67e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.91  E-value: 7.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  376 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 450
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  451 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 525
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436  526 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 584
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 858-891 9.58e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.58e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 568935436    858 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 891
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 909-1041 1.59e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  909 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 988
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935436  989 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1041
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 157-475 2.62e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  157 YMQQDLDVAKTLGDQTGEC-------------RAHGNLGSAFFSKGNYREALTNHRHqlVLAMKLKDREAASS------A 217
Cdd:NF040586  403 YLRGDYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEARELDED--TLERQRRVLGLGEDhphtlmT 480

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  218 LSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDlSEAREL---GNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREE 294
Cdd:NF040586  481 AGGLGADLRALGRFREALELDEETLERHRRVFGE-DHPRTLraaNNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHP 559

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  295 ARaysnLGSAYHYrrnfdkamsyhncvlelaqelmekpieMRAYAGLGHAARCMQDLERAKQYHEQQLGIAedlkDRAAE 374
Cdd:NF040586  560 RT----LLSANNL---------------------------ARDLRELGRYAEALDLLEEALERYREVLGGP----DHPDT 604

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  375 GRASSNLGIIHQMKGDYDTALKLHKthlciaqelSDYAAQGRAYG-----------NMGNAYNALGMYDQAvkyhrqeLQ 443
Cdd:NF040586  605 LRAAKSLAVALRRAGRLEEALELAE---------DTYERYRRRFGpdhpdtlaaalSLANDLRALGDADEA-------RE 668

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 568935436  444 ISMEVNDRASQA------STHG---NLAVAYQALGAHDRAL 475
Cdd:NF040586  669 LAREVLDRYRRVlgedhpFTLAcrnNLAVLLRALGDPEEAR 709
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 779-1107 4.69e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.21  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  779 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RATGSLQQALVCFEKR 844
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  845 LVVAHEL-GE--------ASNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 915
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  916 TALQY----HQLDLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMndlvakt 978
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAAL------- 651

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  979 vsysSLGRTHHALQNYSQAVMYLQEGL-RLAEQLGRRedeakirH--------GLGLSLWASGNLEEAQHQLYRASALFe 1049
Cdd:NF040586  652 ----SLANDLRALGDADEARELAREVLdRYRRVLGED-------HpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935436 1050 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1107
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
 1291-1614 2.65e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771 [Multi-domain]  Cd Length: 287  Bit Score: 192.21  E-value: 2.65e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1291 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1370
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1371 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1446
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1447 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1520
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1521 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1599
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268

                          330
                   ....*....|....*....
gi 568935436  1600 ----FSHPSNWAGFTLIGS 1614
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
848-1614 7.38e-36

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 444019 [Multi-domain]  Cd Length: 711  Bit Score: 147.81  E-value: 7.38e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  848 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 927
Cdd:COG4995    11 AALLAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALL 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  928 AEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRL 1007
Cdd:COG4995    91 AAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAAAAAAALLALAL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1008 AEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDlqtssYQALQRVLVSLGHHD 1087
Cdd:COG4995   171 ALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAA-----ALLALLLLALLALAA 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1088 EALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFHEHYLG 1167
Cdd:COG4995   246 AAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLL 325

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1168 DNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEEMNKQLNSVTDPTGF 1247
Cdd:COG4995   326 LLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAA 405

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1248 LRMVRHNNLLHRSCQSmTSLFSGTVSPSKDGTSSLPRRQNSLAkppLRALYDLLIAPMEGGLmhssgpvGRHRQLVLVLE 1327
Cdd:COG4995   406 AQLLRLLLAALALLLA-LAAYAAARLALLALIEYIILPDRLYA---FVQLYQLLIAPIEAEL-------PGIKRLVIVPD 474

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1328 GELYFVPFALLKgSASNEYLYERFTLIAVPAVRSLGPHSKCHLRKTPPtysssttmAAVIGNPKLPSAvmdrwlWGPMPS 1407
Cdd:COG4995   475 GALRLLPFAALP-DGKGQYLIERYAISYAPSLSLLRARPRPPLPAGLR--------VLAVGNPDFSRG------LPPLPG 539

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1408 AEEEAFMVSELL-GCQPLVGSMATKERVMSALTQAECVHFATHvswklsALVLtpntEGNPAGSkssfghpytipeSLRV 1486
Cdd:COG4995   540 AEAEVEAIAALLpGGTVLLGEEATEAALLAALPGYRILHLATH------GLFD----PDNPLRS------------GLLL 597

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1487 QDD---ASDVESISDCPPlrellltaadlldlrlsvKLVVLSSSQEANGRV-TADGLVALTRAFLAAGAQCVLVALWPVP 1562
Cdd:COG4995   598 ADGlltAYELAQLDLSPA------------------ELVVLSACETGLGDVrGGEGVLGLARAFLYAGARSVVASLWSVD 659

                         730       740       750       760       770
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935436 1563 VAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKAFSHPSNWAGFTLIGS 1614
Cdd:COG4995   660 DEATAALMTEFYRNLAQGKSKAEALRQAQLALLKGSPYSHPYYWAAFVLIGN 711
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
416-675 1.17e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 113.95  E-value: 1.17e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  416 RAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseA 495
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  496 RALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqA 575
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDDAE------ALYNLGLALLELGRYDEAIEAYERALELDPDD------A 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  576 KAYCNLGLAFKALLNFAKAEEC-QKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLE 654
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELlEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250       260
                  ....*....|....*....|.
gi 568935436  655 ASAYAALGTAYRMVQKYDKAL 675
Cdd:COG0457   225 LALALLLALRLAALALYQYRA 245
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
776-1038 1.92e-25

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 107.40  E-value: 1.92e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  776 DRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 855
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYE------KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQ----ALEL--DP 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  856 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETdnpt 935
Cdd:COG0457    74 DDAEALNNLGLALQALGRYEEALEDYDKALELDPD------DAEALYNLGLALLELGRYDEAIEAYERALELDPDD---- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  936 cqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1015
Cdd:COG0457   144 --ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAE 221

                         250       260
                  ....*....|....*....|...
gi 568935436 1016 DEAKIRHGLGLSLWASGNLEEAQ 1038
Cdd:COG0457   222 LLLLALALLLALRLAALALYQYR 244
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
692-901 1.46e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 99.31  E-value: 1.46e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  692 PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMlqqlsgn 771
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALEL------- 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  772 esVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHEL 851
Cdd:COG0457    72 --DPDDAEALNNLGLALQALGRYEEALEDYDKALELD------PDDAEALYNLGLALLELGRYDEAIEAYER----ALEL 139

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935436  852 geASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAA 901
Cdd:COG0457   140 --DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
328-621 3.41e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 98.16  E-value: 3.41e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  328 LMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQqlgiaedlkdraaegrassnlgiihqmkgdydtALKLHKTHlciaqe 407
Cdd:COG0457     1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEK---------------------------------ALELDPDD------ 41

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  408 lsdyaaqGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 487
Cdd:COG0457    42 -------AEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPD 108

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  488 LrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 567
Cdd:COG0457   109 D------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ALYNLGIALEKLGRYEEALELLEKLEAAALA 176

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568935436  568 LHDKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRALGNL 621
Cdd:COG0457   177 ALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
494-736 5.86e-22

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 97.38  E-value: 5.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  494 EARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQdlALAKDLHDkls 573
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQ--ALELDPDD--- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  574 qAKAYCNLGLAFKALLNFAKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVkdrrl 653
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALED------YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDD----- 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  654 eASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLpgECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSL 733
Cdd:COG0457   144 -ADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA--AALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALA 220


                  ...
gi 568935436  734 EAQ 736
Cdd:COG0457   221 ELL 223
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
654-901 1.45e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 96.23  E-value: 1.45e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  654 EASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLkepsl 733
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELD------PDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD----- 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  734 eAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnr 813
Cdd:COG0457    76 -AEALNNLGLALQALGRYEEALEDYDKALELDPDDA---------EALYNLGLALLELGRYDEAIEAYERALELDP---- 141

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  814 mqDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKD 893
Cdd:COG0457   142 --DDADALYNLGIALEKLGRYEEALELLEKLE--AAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 568935436  894 RALESDAA 901
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 417-723 2.12e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 96.72  E-value: 2.12e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  417 AYGNMGNAYNAL--GMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 494
Cdd:COG2956     8 ALGWYFKGLNYLlnGQPDKAIDLLEEALELD------PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------R 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  495 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQ 574
Cdd:COG2956    76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE------ALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------N 143

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  575 AKAYCNLGLAFKALLNFAKAEECqkyllsLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlE 654
Cdd:COG2956   144 AHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD------Y 211

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568935436  655 ASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 723
Cdd:COG2956   212 LPALPRLAELYEKLGDPEEA-------LELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 655-1006 4.39e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 95.57  E-value: 4.39e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  655 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYQEQLELGRklkepsle 734
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVE------AHLALGNLYRRRGEYDRAIRIHQKLLERDP-------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  735 aqvygnmgitkmnmnvmedaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 814
Cdd:COG2956    74 -----------------------------------------DRAEALLELAQDYLKAGLLDRAEELLEKLLELDP----- 107

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  815 qDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvahELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdr 894
Cdd:COG2956   108 -DDAEALRLLAEIYEQEGDWEKAIEVLER------LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC--- 177

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  895 aleSDAACGLGGVYQQMGEYDTALQYhqldLQIAEETDNPTCQgrAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 974
Cdd:COG2956   178 ---ARALLLLAELYLEQGDYEEAIAA----LERALEQDPDYLP--ALPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248

                         330       340       350
                  ....*....|....*....|....*....|..
gi 568935436  975 VAktvsyssLGRTHHALQNYSQAVMYLQEGLR 1006
Cdd:COG2956   249 LA-------LADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
251-498 5.14e-21

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 94.69  E-value: 5.14e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  251 DLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIakdlgsKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelme 330
Cdd:COG0457     4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL------ 71

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  331 KPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSD 410
Cdd:COG0457    72 DPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALELDPDDAD 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  411 yaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRD 490
Cdd:COG0457   146 ------ALYNLGIALEKLGRYEEALELLEKLEAA--ALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLA 217


                  ....*...
gi 568935436  491 IQSEARAL 498
Cdd:COG0457   218 ALAELLLL 225
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 541-838 8.75e-21

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 94.80  E-value: 8.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  541 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkYLLSLaqsLDNSQAKFRALGN 620
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIR---IHQKL---LERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHG 699
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAI-------EVLERLLKLgPENAHAYC 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  700 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLE-AQVYgnmgitkMNMNVMEDAIGYFEQqlaMLQQLSGNESVLDRg 778
Cdd:COG2956   149 ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLlAELY-------LEQGDYEEAIAALER---ALEQDPDYLPALPR- 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  779 raygnLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQAL 838
Cdd:COG2956   218 -----LAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
217-476 5.53e-20

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 91.61  E-value: 5.53e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  217 ALSSLGHVYTAIGDYPNALASHKQCVLLakqskdDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeAR 296
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------AE 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  297 AYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegr 376
Cdd:COG0457    78 ALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDAD------ 145

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  377 ASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS 456
Cdd:COG0457   146 ALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLL 225

                         250       260
                  ....*....|....*....|
gi 568935436  457 THGNLAVAYQALGAHDRALQ 476
Cdd:COG0457   226 ALALLLALRLAALALYQYRA 245
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 784-1083 6.98e-20

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 92.10  E-value: 6.98e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  784 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGE 863
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDP------ETVEAHLALGNLYRRRGEYDRAIRIHQKLL------ERDPDRAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  864 LGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQldlQIAEETDNPTcqgRAYGN 943
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLE---RLLKLGPENA---HAYCE 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  944 LGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktvsYSSLGRTHHALQNYSQAVMYLQEGLRLAeqlgrrEDEAKIRHG 1023
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDP--DCARA----LLLLAELYLEQGDYEEAIAALERALEQD------PDYLPALPR 217

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1024 LGLSLWASGNLEEAQHQLYRAsalfetIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSL 1083
Cdd:COG2956   218 LAELYEKLGDPEEALELLRKA------LELDPSDDLLLALADLLERKEGLEAALALLERQ 271
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 461-763 1.17e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 91.33  E-value: 1.17e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  461 LAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHN 540
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  541 LGYAHYCLGNYQEAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQslDNSQAKFRalgn 620
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEK--LLELDPDD----AEALRLLAEIYEQEGDWEKAIEVLERLLKLGP--ENAHAYCE---- 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 699
Cdd:COG2956   150 LAELYLEQGDYDEAIEALEKALKLDPD------CARALLLLAELYLEQGDYEEA-------IAALERALEQdPDYLPALP 216

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436  700 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYgnmgitkMNMNVMEDAIGYFEQQLA 763
Cdd:COG2956   217 RLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLL-------ERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
176-434 1.34e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 90.45  E-value: 1.34e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  176 RAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAasSALSSLGHVYTAIGDYPNALASHKQCVLLakqskdDLSEA 255
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEK----ALELDPDDA--EALYNLGLAYLRLGRYEEALADYEQALEL------DPDDA 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  256 RELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEM 335
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALELDPDD------AEALYNLGLALLELGRYDEAIEAYERALEL------DPDDA 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  336 RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQG 415
Cdd:COG0457   145 DALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLL 224

                         250
                  ....*....|....*....
gi 568935436  416 RAYGNMGNAYNALGMYDQA 434
Cdd:COG0457   225 LALALLLALRLAALALYQY 243
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 27-838 2.84e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.54  E-value: 2.84e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436    27 APAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQE 106
Cdd:TIGR02917  193 VDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALV 270

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   107 LLTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgn 180
Cdd:TIGR02917  271 DFQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------ 334

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   181 LGSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGN 260
Cdd:TIGR02917  335 LASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQ 402

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   261 MGAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIE 334
Cdd:TIGR02917  403 LGISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHN 469

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   335 MRAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQE 407
Cdd:TIGR02917  470 LLGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILA 538

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   408 LSDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIARE 487
Cdd:TIGR02917  539 LAGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNE 592

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   488 LRDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAK 566
Cdd:TIGR02917  593 AADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKP 666

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   567 DlHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgl 644
Cdd:TIGR02917  667 D-NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL-- 730

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   645 shhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQL 722
Cdd:TIGR02917  731 -------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVV 797

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   723 ElgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYE 802
Cdd:TIGR02917  798 K-----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLR 861

                          810       820       830
                   ....*....|....*....|....*....|....*..
gi 568935436   803 QYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 838
Cdd:TIGR02917  862 KAVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 621-920 3.22e-19

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 90.17  E-value: 3.22e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSdlpgecRAHGH 700
Cdd:COG2956    14 KGLNYLLNGQPDKAIDLLEEALELDPE------TVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------EALLE 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  701 LAAVYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQqlamLQQLSGNESvldrgRA 780
Cdd:COG2956    82 LAQDYLKAGLLDRAEELLEKLLELDPD------DAEALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENA-----HA 146

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  781 YGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHElgeasnKAQA 860
Cdd:COG2956   147 YCELAELYLEQGDYDEAIEALEKALKLDP------DCARALLLLAELYLEQGDYEEAIAALERALEQDPD------YLPA 214

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  861 YGELGSLHSQLGNYEQAISCLERQLNIARDmkdraleSDAACGLGGVYQQMGEYDTALQY 920
Cdd:COG2956   215 LPRLAELYEKLGDPEEALELLRKALELDPS-------DDLLLALADLLERKEGLEAALAL 267
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 312-580 4.47e-19

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 94.29  E-value: 4.47e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  312 DKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLG----IAEDLKDRAAEGRASSNLGIIHQM 387
Cdd:COG3914    11 ALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALaageAAAAAAALLLLAALLELAALLLQA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  388 KGDYDTALklhkTHLCIAQELS-DYAAqgrAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndRASQASTHGNLAVAYQ 466
Cdd:COG3914    91 LGRYEEAL----ALYRRALALNpDNAE---ALFNLGNLLLALGRLEEALAALRRALAL------NPDFAEAYLNLGEALR 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  467 ALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHY 546
Cdd:COG3914   158 RLGRLEEAIAALRRALELDPDN------AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNAD------AHSNLLFALR 225

                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935436  547 CLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCN 580
Cdd:COG3914   226 QACDWEVYDRFEELLAALARGPSELSPFALLYLP 259
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 185-1051 6.47e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 90.91  E-value: 6.47e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   185 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALASHKQCVLL---AKQSKDDLSEArelgnm 261
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLgypKNQVLPLLARA------ 99

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   262 gavYIAMGDFENAVQCHEqhlriAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELMEKpiemRAYAGL 341
Cdd:TIGR02917  100 ---YLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----SLYAKL 163

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   342 GHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAygNM 421
Cdd:TIGR02917  164 GLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVLL--AL 233

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   422 GNAYNALGMYDQAVKYHRQELQIsmeVNDRASQASTHGnlAVAYQAlGAHDRALQHYQNHLNIARElrdiQSEARALSNL 501
Cdd:TIGR02917  234 ATILIEAGEFEEAEKHADALLKK---APNSPLAHYLKA--LVDFQK-KNYEDARETLQDALKSAPE----YLPALLLAGA 303

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   502 GNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYCN 580
Cdd:TIGR02917  304 SEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALSL 368

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   581 LGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAKFRAlgNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLeasayaA 660
Cdd:TIGR02917  369 LGEAYLALGDFEKAAE----YLAKATELDPENAAART--QLGISKLSQGDPSEAIADLETAAQLDPELGRADL------L 436

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   661 LGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY-G 739
Cdd:TIGR02917  437 LILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANlA 506

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   740 NMGITKMNmnvMEDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKYY 801
Cdd:TIGR02917  507 RIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQL 583

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   802 EQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAISC 880
Cdd:TIGR02917  584 KKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAITS 657

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   881 LERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFERA 957
Cdd:TIGR02917  658 LKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQKDYPAA 722

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   958 VVYQEQHLSIAAQmNDLVAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEEA 1037
Cdd:TIGR02917  723 IQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------AELYLA 782

                          890
                   ....*....|....
gi 568935436  1038 QHQLYRASALFETI 1051
Cdd:TIGR02917  783 QKDYDKAIKHYQTV 796
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 293-563 2.00e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.78  E-value: 2.00e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  293 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQElmekpiEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDra 372
Cdd:COG2956    40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE-- 111

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  373 aegrASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQgrAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDRA 452
Cdd:COG2956   112 ----ALRLLAEIYEQEGDWEKAIEVLER----LLKLGPENAH--AYCELAELYLEQGDYDEAIEA----LEKALKLDPDC 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  453 SQASThgNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 532
Cdd:COG2956   178 ARALL--LLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL 249

                         250       260       270
                  ....*....|....*....|....*....|.
gi 568935436  533 gegkvchNLGYAHYCLGNYQEAVKYYEQDLA 563
Cdd:COG2956   250 -------ALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 260-523 2.57e-17

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 84.40  E-value: 2.57e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  260 NMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYA 339
Cdd:COG2956    47 ALGNLYRRRGEYDRAIRIHQKLLERDPD------RAEALLELAQDYLKAGLLDRAEELLEKLLELD------PDDAEALR 114

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  340 GLGHAARCMQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYG 419
Cdd:COG2956   115 LLAEIYEQEGDWEKAIEVLERLLKLGPE------NAHAYCELAELYLEQGDYDEAIEA------LEKALKLDPDCARALL 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  420 NMGNAYNALGMYDQAVKYHRQELQISMEvndrasQASTHGNLAVAYQALGAHDRALQHYQNHLniarelrDIQSEARALS 499
Cdd:COG2956   183 LLAELYLEQGDYEEAIAALERALEQDPD------YLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLL 249

                         250       260
                  ....*....|....*....|....
gi 568935436  500 NLGNFHCSRGEYVQAAPYYEQYLR 523
Cdd:COG2956   250 ALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 177-443 2.01e-15

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 79.00  E-value: 2.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  177 AHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSSLGHVYTAIGDYPNALASHKQCVllakQSKDDLSEAR 256
Cdd:COG2956    44 AHLALGNLYRRRGEYDRAIRIHQK----LLERDPDRAE--ALLELAQDYLKAGLLDRAEELLEKLL----ELDPDDAEAL 113

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  257 ELgnMGAVYIAMGDFENAVQCHEQHLRIAKdlgskrEEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELmeKPIEMR 336
Cdd:COG2956   114 RL--LAEIYEQEGDWEKAIEVLERLLKLGP------ENAHAYCELAELYLEQGDYDEAIEA----LEKALKL--DPDCAR 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  337 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLkdraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 416
Cdd:COG2956   180 ALLLLAELYLEQGDYEEAIAALERALEQDPDY------LPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD 253

                         250       260
                  ....*....|....*....|....*..
gi 568935436  417 aygnmgnAYNALGMYDQAVKYHRQELQ 443
Cdd:COG2956   254 -------LLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
899-1169 2.15e-15

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 78.12  E-value: 2.15e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  899 DAACGLGGVYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMndlvakT 978
Cdd:COG0457     9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPD------DAEALYNLGLAYLRLGRYEEALADYEQALELDPDD------A 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  979 VSYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheaqls 1058
Cdd:COG0457    77 EALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNLGLALLELGRYDEAIEAYERA-------------- 136

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1059 tdykLSLFDLQTSSYQALQRVLVSLGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVL 1138
Cdd:COG0457   137 ----LELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212

                         250       260       270
                  ....*....|....*....|....*....|.
gi 568935436 1139 YYSLAAGYLYSWLLAPGAGILKFHEHYLGDN 1169
Cdd:COG0457   213 ILTLAALAELLLLALALLLALRLAALALYQY 243
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 205-888 4.49e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 81.67  E-value: 4.49e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   205 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAvqchE 279
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL------ALATILIEAGEFEEA----E 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   280 QHLRIAKdlgskreeARAYSNLGSAY-----HYRR-NFDKAMSYHNCVLELAQELMEkpieMRAYAGLGHAARcmQDLER 353
Cdd:TIGR02917  248 KHADALL--------KKAPNSPLAHYlkalvDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQ 313

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   354 AKQYHEQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQ 433
Cdd:TIGR02917  314 AYQYLNQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEK 381

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   434 AVKY-------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQ 492
Cdd:TIGR02917  382 AAEYlakateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQ 461

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   493 SEARALSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDL 568
Cdd:TIGR02917  462 PDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRA 535

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   569 HDKLSQAKAYCN--------LGLAFKA-------LLNFAKAEECQKYL---LSLAQS-LDNSQAKFRALGNLGDIFICKK 629
Cdd:TIGR02917  536 ILALAGLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAG 615

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   630 DINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALG 709
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAK 683

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   710 KYTMAFKCYQeQLElgrklKEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQ------------QLAMLQQLSGN------ 771
Cdd:TIGR02917  684 RTESAKKIAK-SLQ-----KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeavk 757

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   772 --ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghratgslqqALVCFEKRL 845
Cdd:TIGR02917  758 tlEAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL------------AWLYLELKD 819

                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*...
gi 568935436   846 VVAHELGE-----ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 888
Cdd:TIGR02917  820 PRALEYAEralklAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
141-395 8.68e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.50  E-value: 8.68e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  141 LSSAHWSLGNTEKSTGYMQQDLDVAKTLGDqtgecrAHGNLGSAFFSKGNYREALTNHRHqlvlAMKLKDREAAssALSS 220
Cdd:COG0457    14 LGLAYRRLGRYEEAIEDYEKALELDPDDAE------ALYNLGLAYLRLGRYEEALADYEQ----ALELDPDDAE--ALNN 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  221 LGHVYTAIGDYPNALASHKQcvllAKQSKDDLSEAreLGNMGAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSN 300
Cdd:COG0457    82 LGLALQALGRYEEALEDYDK----ALELDPDDAEA--LYNLGLALLELGRYDEAIEAYERALELDPDD------ADALYN 149

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  301 LGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSN 380
Cdd:COG0457   150 LGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229

                         250
                  ....*....|....*
gi 568935436  381 LGIIHQMKGDYDTAL 395
Cdd:COG0457   230 LLALRLAALALYQYR 244
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 433-640 2.89e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 75.41  E-value: 2.89e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  433 QAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQ---SEARALSNLGNFHCSRG 509
Cdd:COG3914    13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAallLLAALLELAALLLQALG 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  510 EYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsqAKAYCNLGLAFKALL 589
Cdd:COG3914    93 RYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNPDF------AEAYLNLGEALRRLG 160

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 568935436  590 NFAKAEECqkYLLSLAQSLDNSQakfrALGNLGDIFICKKDINGAIKFYEQ 640
Cdd:COG3914   161 RLEEAIAA--LRRALELDPDNAE----ALNNLGNALQDLGRLEEAIAAYRR 205
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 638-805 5.17e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.64  E-value: 5.17e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  638 YEQQLGLSHHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFK 716
Cdd:COG3914    54 AAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALnPDNAEALFNLGNLLLALGRLEEALA 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  717 CYQEQLELgrklkEPSLeAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLqqlsgnesvLDRGRAYGNLGDCYEALGDYEE 796
Cdd:COG3914   134 ALRRALAL-----NPDF-AEAYLNLGEALRRLGRLEEAIAALRRALELD---------PDNAEALNNLGNALQDLGRLEE 198


                  ....*....
gi 568935436  797 AIKYYEQYL 805
Cdd:COG3914   199 AIAAYRRAL 207
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 650-941 6.46e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 74.26  E-value: 6.46e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  650 DRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELgrklk 729
Cdd:COG3914    33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL----- 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  730 EPsleaqvygnmgitkmnmnvmedaigyfeqqlamlqqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAq 809
Cdd:COG3914   108 NP--------------------------------------------DNAEALFNLGNLLLALGRLEEALAALRRALALN- 142

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  810 slnrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIAR 889
Cdd:COG3914   143 -----PDFAEAYLNLGEALRRLGRLEEAIAALRR----ALEL--DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935436  890 DmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPTCQGRAY 941
Cdd:COG3914   212 D------NADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 461-732 1.11e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 73.49  E-value: 1.11e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  461 LAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHN 540
Cdd:COG3914     4 AALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLEL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  541 LGYAHYCLGNYQEAVKYYEQDLALAKDLHDklsqakAYCNLGLAFKALLNFAKAEECqkYLLSLAQSLDNSQakfrALGN 620
Cdd:COG3914    84 AALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAA--LRRALALNPDFAE----AYLN 151

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKAlgyhtqeLEVYQELSDL-PGECRAHG 699
Cdd:COG3914   152 LGEALRRLGRLEEAIAALRRALELDPD------NAEALNNLGNALQDLGRLEEA-------IAAYRRALELdPDNADAHS 218

                         250       260       270
                  ....*....|....*....|....*....|...
gi 568935436  700 HLAAVYMALGKYTMAFKCYQEQLELGRKLKEPS 732
Cdd:COG3914   219 NLLFALRQACDWEVYDRFEELLAALARGPSELS 251
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 655-806 1.88e-11

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 1.88e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  655 ASAYAALGTAYRMVQKYDKALgyhtqelEVYQELSDL-PGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepsl 733
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAE-------ALLEKALELdPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD------ 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436  734 EAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLS 806
Cdd:COG4783    71 EPEARLNLGLALLKAGDYDEALALLEKALKLDP---------EHPEAYLRLARAYRALGRPDEAIAALEKALE 134
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 405-567 1.14e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 61.75  E-value: 1.14e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  405 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevndrasqastHGNLAVAYQALGAHDRALQHYQNhlni 484
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-------------FALLGEILLQLGDLDEAIVLLHE---- 63

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  485 ARELRdiQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 564
Cdd:COG4783    64 ALELD--PDEPEARLNLGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALEL 135


                  ...
gi 568935436  565 AKD 567
Cdd:COG4783   136 DPD 138
TPR_12 pfam13424
Tetratricopeptide repeat;
735-810 1.45e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.45e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436   735 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 810
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 784-930 2.10e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 60.98  E-value: 2.10e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  784 LGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeASNKAQAYGE 863
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDP------DNPEAFALLGEILLQLGDLDEAIVLLHE----ALEL--DPDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  864 LGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 930
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPEH------PEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 405-566 2.65e-10

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 61.13  E-value: 2.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  405 AQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNI 484
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  485 ARElrdiqsEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLAL 564
Cdd:COG5010    84 DPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN------AYSNLAALLLSLGQDDEAKAALQRALGT 151


                  ..
gi 568935436  565 AK 566
Cdd:COG5010   152 SP 153
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 746-1049 2.75e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.25  E-value: 2.75e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   746 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 825
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   826 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 902
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   903 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 963
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   964 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1043
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305


                   ....*.
gi 568935436  1044 ASALFE 1049
Cdd:pfam17874  306 ALSLAE 311
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 776-898 4.65e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 59.63  E-value: 4.65e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  776 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrmqDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHelgeas 855
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP------DNADALLDLAEALLAAGDTEEAEELLERALALDP------ 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 568935436  856 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIA-RDMKDRALES 898
Cdd:COG4235    83 DNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLpADAPARLLEA 126
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
464-570 1.06e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 1.06e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  464 AYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYVQAAPYyEQYLRLAPDlqdmegEGKVCHNLGY 543
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 568935436  544 AHYCLGNYQEAVKYYEQDLALAKDLHD 570
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 372-527 1.27e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 58.66  E-value: 1.27e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  372 AAEGRASSNLGIIHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYhrqeLQISMEVNDR 451
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLE------KALELDPDNPEAFALLGEILLQLGDLDEAIVL----LHEALELDPD 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436  452 ASQAstHGNLAVAYQALGAHDRALQHYQnhlniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:COG4783    71 EPEA--RLNLGLALLKAGDYDEALALLE------KALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
706-1156 1.56e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 63.72  E-value: 1.56e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  706 MALGKYTMAFKCYQEQLELGRKLKEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQQL-AMLQQLSGNESVLDR---GRAY 781
Cdd:COG3899   716 LARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALaARALAALAALRHGNPpasARAY 795

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  782 GNLGDCYeaLGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGEASNKAQAY 861
Cdd:COG3899   796 ANLGLLL--LGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLAL 873

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  862 GELGSLHSQLGNYEQAISCLERQLNIARDM------KDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT 935
Cdd:COG3899   874 AAAAAAAAAAAALAAAAAAAARLLAAAAAAlaaaaaAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  936 CQGRAYGNLGLTYESLgTFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQLGRRE 1015
Cdd:COG3899   954 LAAALALAAAAAAAAA-AALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAA 1032

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1016 DEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVSLGHHDEALAVAER 1095
Cdd:COG3899  1033 AAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALA 1112

                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935436 1096 GRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGA 1156
Cdd:COG3899  1113 ALALAAALAALALAAAARAAAALLLLAAALALALAALLLLAALLLALALLLLALAALALAA 1173
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 848-1047 1.68e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.68e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  848 AHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQI 927
Cdd:COG3914    28 LAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  928 aeetdNPTCqGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLvaktvsYSSLGRTHHALQNYSQAVMYLQEGLRL 1007
Cdd:COG3914   108 -----NPDN-AEALFNLGNLLLALGRLEEALAALRRALALNPDFAEA------YLNLGEALRRLGRLEEAIAALRRALEL 175

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 568935436 1008 AEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1047
Cdd:COG3914   176 DP------DNAEALNNLGNALQDLGRLEEAIAAYRRALEL 209
TPR_12 pfam13424
Tetratricopeptide repeat;
416-487 1.78e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.78e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436   416 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 487
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
858-930 2.85e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.47  E-value: 2.85e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436   858 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 930
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 450-596 3.48e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 57.66  E-value: 3.48e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  450 DRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlq 529
Cdd:COG5010     9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN-- 86

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  530 dmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEE 596
Cdd:COG5010    87 ----NPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKA 143
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 855-1008 4.75e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.12  E-value: 4.75e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  855 SNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQ-YHQLdlqIAEETDN 933
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIVlLHEA---LELDPDE 71

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436  934 PtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLvaktvsYSSLGRTHHALQNYSQAVMYLQEGLRLA 1008
Cdd:COG4783    72 P----EARLNLGLALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
COG3899 COG3899
Predicted ATPase [General function prediction only];
450-1047 5.14e-09

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 62.18  E-value: 5.14e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  450 DRASQASTHGNLAVAYQALGAHDRALQHYQ--NHLNIARELRDIqseARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:COG3899   661 PPEERRALHRRIARALEARGPEPLEERLFElaHHLNRAGERDRA---ARLLLRAARRALARGAYAEALRYLERALELLPP 737

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  528 LQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL-------AKDLHDKLSQAKAYCNLGLAFkaLLNFAKAEECQKY 600
Cdd:COG3899   738 DPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYANLGLLL--LGDYEEAYEFGEL 815

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  601 LLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLEASAYAALGTAYRMVQkyDKALGYHTQ 680
Cdd:COG3899   816 ALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAA--ALAAAAAAA 893

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  681 ELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKEPSLEAQvygnmgitkmnmnvmEDAIGYFEQ 760
Cdd:COG3899   894 ARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAA---------------AAAALAAAL 958

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  761 QLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVC 840
Cdd:COG3899   959 ALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLA 1038

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  841 FEKRLVVAHELGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 920
Cdd:COG3899  1039 AAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAA 1118

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  921 HQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVyQEQHLSIAAQMNDLVAKTVSYSSLGRTHHALQNYSQAVMY 1000
Cdd:COG3899  1119 ALAALALAAAARAAAALLLLAAALALALAALLLLAALLL-ALALLLLALAALALAAALAALAAALLAAAAAAAAAAALLA 1197

                         570       580       590       600
                  ....*....|....*....|....*....|....*....|....*..
gi 568935436 1001 LQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASAL 1047
Cdd:COG3899  1198 ALLALAARLAALLALALLALEAAALLLLLLLAALALAAALLALRLLA 1244
TPR_12 pfam13424
Tetratricopeptide repeat;
258-327 5.92e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 5.92e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935436   258 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 327
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
453-527 6.93e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.32  E-value: 6.93e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436   453 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
424-530 7.70e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 54.79  E-value: 7.70e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  424 AYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQhYQNHLNIARElrdiqsEARALSNLGN 503
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELD------PDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 568935436  504 FHCSRGEYVQAAPYYEQYLRLAPDLQD 530
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
COG3899 COG3899
Predicted ATPase [General function prediction only];
267-525 1.51e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 60.64  E-value: 1.51e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  267 AMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLEL-------AQELMEKPIEMRAYA 339
Cdd:COG3899   717 ARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaALRHGNPPASARAYA 796

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  340 GLGHAARcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYG 419
Cdd:COG3899   797 NLGLLLL--GDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALA 874

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  420 nMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALS 499
Cdd:COG3899   875 -AAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAA 953

                         250       260
                  ....*....|....*....|....*.
gi 568935436  500 NLGNFHCSRGEYVQAAPYYEQYLRLA 525
Cdd:COG3899   954 LAAALALAAAAAAAAAAALAAAAAAA 979
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-302 2.20e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 57.82  E-value: 2.20e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   30 YFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLqkMKLDKSPFVVVSVVGQELLT 109
Cdd:COG2956    11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKL--LERDPDRAEALLELAQDYLK 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  110 AGHHGASVVVLEAALKIGtcslKLRGSVFSALSSAHWSLGNTEKStgymqqdLDVAKTLGDQTGEC-RAHGNLGSAFFSK 188
Cdd:COG2956    89 AGLLDRAEELLEKLLELD----PDDAEALRLLAEIYEQEGDWEKA-------IEVLERLLKLGPENaHAYCELAELYLEQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  189 GNYREALTNhrhqlvLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQcvlLAKQSKDDLSEARELGNmgaVYIAM 268
Cdd:COG2956   158 GDYDEAIEA------LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALER---ALEQDPDYLPALPRLAE---LYEKL 225

                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935436  269 GDFENAVQCHEQHLRIAKDLGSKREEARAYSNLG 302
Cdd:COG2956   226 GDPEEALELLRKALELDPSDDLLLALADLLERKE 259
TPR_12 pfam13424
Tetratricopeptide repeat;
214-287 2.31e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 2.31e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436   214 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 287
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 210-486 2.32e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 59.62  E-value: 2.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  210 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDlg 289
Cdd:COG3914    33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD-- 110

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  290 skreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEkpiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLk 369
Cdd:COG3914   111 ----NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALELDPDN- 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  370 draAEgrASSNLGIIHQMKGDYDTALKlhktHLCIAQELSdyAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQIsmevn 449
Cdd:COG3914   180 ---AE--ALNNLGNALQDLGRLEEAIA----AYRRALELD--PDNADAHSNLLFALRQACDWEVYDRFEELLAAL----- 243

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 568935436  450 drASQASTHGNLAVAYQalgAHDRALQHYQNHLNIAR 486
Cdd:COG3914   244 --ARGPSELSPFALLYL---PDDDPAELLALARAWAQ 275
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 293-447 2.54e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.81  E-value: 2.54e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  293 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYAGLGHAARCMQDLERA-KQYHEQqlgiaedLKDR 371
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEALLEKALELD------PDNPEAFALLGEILLQLGDLDEAiVLLHEA-------LELD 68

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436  372 AAEGRASSNLGIIHQMKGDYDTALKLhkthlcIAQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISME 447
Cdd:COG4783    69 PDEPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
COG3899 COG3899
Predicted ATPase [General function prediction only];
281-575 2.82e-08

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 59.49  E-value: 2.82e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  281 HLRIAKDlgskREEARAYsNLGSAYHYRRN--FDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYH 358
Cdd:COG3899   694 HLNRAGE----RDRAARL-LLRAARRALARgaYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALL 768

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  359 EQQLGI-------AEDLKDRAAEGRASSNLGIIhqMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGMY 431
Cdd:COG3899   769 ERALAAralaalaALRHGNPPASARAYANLGLL--LLGDYEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPL 846

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  432 DQAVKYHRQELQISMEVNDRA------SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNFH 505
Cdd:COG3899   847 REALELLREALEAGLETGDAAlallalAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAA 926

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  506 CSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQA 575
Cdd:COG3899   927 AAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAALEAAAA 996
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
787-890 2.84e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 53.25  E-value: 2.84e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  787 CYEALGDYEEAIKYYEQylsvaqSLNRMQDQAKAYRGLGNGHRATGSLQQALVcFEKrlvvAHELgeASNKAQAYGELGS 866
Cdd:COG3063     1 LYLKLGDLEEAEEYYEK------ALELDPDNADALNNLGLLLLEQGRYDEAIA-LEK----ALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....
gi 568935436  867 LHSQLGNYEQAISCLERQLNIARD 890
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPS 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 735-891 3.36e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 3.36e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  735 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQslnrm 814
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKALELDP---------DNPEAFALLGEILLQLGDLDEAIVLLHEALELDP----- 69

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  815 qDQAKAYRGLGNGHRATGSLQQALVCFEKRLvvahelGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 891
Cdd:COG4783    70 -DEPEARLNLGLALLKAGDYDEALALLEKAL------KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 858-1095 4.71e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 4.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  858 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLggvYQQMGEYDTALQYHQLDLQIAEETDNPTCQ 937
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLL---LAALAEAAAAALLALAAGEAAAAAAALLLL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  938 GRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDlvaktvSYSSLGRTHHALQNYSQAVMYLQEGLRLAEqlgrreDE 1017
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAE------ALFNLGNLLLALGRLEEALAALRRALALNP------DF 145

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568935436 1018 AKIRHGLGLSLWASGNLEEAQHQLYRASALFETiRHEAqlstdyklslfdlqtssYQALQRVLVSLGHHDEALAVAER 1095
Cdd:COG3914   146 AEAYLNLGEALRRLGRLEEAIAALRRALELDPD-NAEA-----------------LNNLGNALQDLGRLEEAIAAYRR 205
TPR_12 pfam13424
Tetratricopeptide repeat;
376-444 9.43e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 9.43e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935436   376 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 444
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_12 pfam13424
Tetratricopeptide repeat;
776-890 9.43e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 9.43e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   776 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLnrmqdqakayrgLGNGHRATgslqqalvcfekrlvvahelgeas 855
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRL------------LGPDHPLT------------------------ 44

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 568935436   856 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 890
Cdd:pfam13424   45 --ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 686-808 1.15e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.15e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  686 QELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVMEDAIGYFEQqlaML 765
Cdd:COG4235     8 QALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL-----DPD-NADALLDLAEALLAAGDTEEAEELLER---AL 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 568935436  766 QQLSGNEsvldrgRAYGNLGDCYEALGDYEEAIKYYEQYLSVA 808
Cdd:COG4235    79 ALDPDNP------EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 415-527 1.33e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.70  E-value: 1.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  415 GRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsE 494
Cdd:COG4235    17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLD------PDNADALLDLAEALLAAGDTEEAEELLERALALDPD------N 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 568935436  495 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:COG4235    85 PEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 573-724 1.80e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.50  E-value: 1.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  573 SQAKAYCNLGLAFKALLNFAKAEEcqkyllSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLGLSHHvkdrr 652
Cdd:COG4783     2 ACAEALYALAQALLLAGDYDEAEA------LLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPD----- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935436  653 lEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDlpgecrAHGHLAAVYMALGKYTMAFKCYQEQLEL 724
Cdd:COG4783    71 -EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE------AYLRLARAYRALGRPDEAIAALEKALEL 135
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 646-805 1.80e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 1.80e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  646 HHVKDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELG 725
Cdd:COG5010     5 EGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLD 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  726 RKlkepslEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSgnesvldrgRAYGNLGDCYEALGDYEEAIKYYEQYL 805
Cdd:COG5010    85 PN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNP---------NAYSNLAALLLSLGQDDEAKAALQRAL 149
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 701-845 2.45e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.12  E-value: 2.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  701 LAAVYMALGKYTMAFKCYQEQLELgrklkEPSlEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQqlsgnesvlDRGRA 780
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALEL-----DPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDP---------DEPEA 74

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436  781 YGNLGDCYEALGDYEEAIKYYEQYLSvaqslnRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 845
Cdd:COG4783    75 RLNLGLALLKAGDYDEALALLEKALK------LDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 433-565 3.05e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 51.55  E-value: 3.05e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  433 QAVKYHRQELQismevnDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALSNLGNFHCSRGEYV 512
Cdd:COG4235     1 EAIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568935436  513 QAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA 565
Cdd:COG4235    69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 541-687 5.23e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.96  E-value: 5.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  541 LGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkyllSLAQSLDNSQAKFRALGN 620
Cdd:COG4783    10 LAQALLLAGDYDEAEALLEKALELDPD------NPEAFALLGEILLQLGDLDEAIV------LLHEALELDPDEPEARLN 77

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  621 LGDIFICKKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 687
Cdd:COG4783    78 LGLALLKAGDYDEALALLEKALKLDPE------HPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
430-664 5.45e-07

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.00  E-value: 5.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  430 MYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE-------ARALSNLG 502
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRalalpdlAQLYYERG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  503 NFHCSRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLG 582
Cdd:COG4785    81 VAYDSLGDYDLAIADFDQALELDPDLAE------AYNNRGLAYLLLGDYDAALEDFDRALELDPD------YAYAYLNRG 148

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  583 LAFKALLNFAKAEEcqkyLLSLAQSLDNSQAkFRALgnLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLEASAYAALG 662
Cdd:COG4785   149 IALYYLGRYELAIA----DLEKALELDPNDP-ERAL--WLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLA 221


                  ..
gi 568935436  663 TA 664
Cdd:COG4785   222 LA 223
COG3899 COG3899
Predicted ATPase [General function prediction only];
191-525 8.01e-07

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 54.86  E-value: 8.01e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  191 YREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYiaMGD 270
Cdd:COG3899   728 LERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEALLERALAARALAALAALRHGNPPASARAYANLGLLL--LGD 805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  271 FENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMRAYAGLGHAARCMQD 350
Cdd:COG3899   806 YEEAYEFGELALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAA 885

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  351 LERAKQYHEQQLGIAE------DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNA 424
Cdd:COG3899   886 LAAAAAAAARLLAAAAaalaaaAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAA 965

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  425 YNALGmYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNLGNF 504
Cdd:COG3899   966 AAAAA-ALAAAAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALA 1044

                         330       340
                  ....*....|....*....|.
gi 568935436  505 HCSRGEYVQAAPYYEQYLRLA 525
Cdd:COG3899  1045 LLAALAAAAAAAAAAAALAAA 1065
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 482-645 1.05e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.73  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  482 LNIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQD 561
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  562 LALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFICKKDINGAIKFYEQQ 641
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKE----YYEKALALSPDNP--NAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 568935436  642 LGLS 645
Cdd:COG5010   149 LGTS 152
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 417-527 1.16e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  417 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 496
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568935436  497 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 527
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
867-969 1.23e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.63  E-value: 1.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  867 LHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLdlqIAEETDNPtcqgRAYGNLGL 946
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEKA---LKLDPNNA----EALLNLAE 67

                          90       100
                  ....*....|....*....|...
gi 568935436  947 TYESLGTFERAVVYQEQHLSIAA 969
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDP 90
TPR_12 pfam13424
Tetratricopeptide repeat;
900-970 1.34e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.34e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436   900 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 970
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 202-365 1.34e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 1.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  202 LVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQH 281
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  282 LRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELmeKPIEMRAYAGLGHAARCMQDLERAKQYHEQQ 361
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 568935436  362 LGIA 365
Cdd:COG5010   149 LGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
704-813 1.74e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 48.24  E-value: 1.74e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  704 VYMALGKYTMAFKCYQEQLELGRKlkepslEAQVYGNMGITKMNMNVMEDAIGYfeQQLAMLQQlsgnesvlDRGRAYGN 783
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL--EKALKLDP--------NNAEALLN 64

                          90       100       110
                  ....*....|....*....|....*....|
gi 568935436  784 LGDCYEALGDYEEAIKYYEQYLSVAQSLNR 813
Cdd:COG3063    65 LAELLLELGDYDEALAYLERALELDPSALR 94
TPR_12 pfam13424
Tetratricopeptide repeat;
980-1049 1.81e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 1.81e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935436   980 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1049
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
TPR_7 pfam13176
Tetratricopeptide repeat;
538-571 1.99e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.99e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935436   538 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 571
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TPR_12 pfam13424
Tetratricopeptide repeat;
293-367 2.60e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 2.60e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436   293 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELM--EKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 367
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PHA03377 PHA03377
EBNA-3C; Provisional
 1950-2334 2.64e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.13  E-value: 2.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1950 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2027
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2028 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2106
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2107 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2178
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2179 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2257
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2258 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2330
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859


                  ....
gi 568935436 2331 APRP 2334
Cdd:PHA03377  860 PPRL 863
TPR_7 pfam13176
Tetratricopeptide repeat;
860-895 2.74e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.99  E-value: 2.74e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935436   860 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 895
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 1932-2254 2.82e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1932 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 2009
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2010 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2086
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2087 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2163
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2164 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2243
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734

                          330
                   ....*....|.
gi 568935436  2244 QSTPQPPRGPR 2254
Cdd:pfam05109  735 ATSPQAPSGQK 745
TPR_12 pfam13424
Tetratricopeptide repeat;
539-607 2.84e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 2.84e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935436   539 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQS 607
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 863-1099 3.33e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 52.61  E-value: 3.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  863 ELGSLHSQLGNYEQAiscleRQLNIA--RDMKDRALESD-------AACGLGGVYQQMGEYDTALQYHQLDLQIAEET-- 931
Cdd:NF040586  439 HLANALRSLGRYEEA-----RELDEDtlERQRRVLGLGEdhphtlmTAGGLGADLRALGRFREALELDEETLERHRRVfg 513

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  932 -DNPTCQgRAYGNLGLTYESLGTFERAVVYQEQHLsiaAQMNDLVAKT-----VSYSSLGRTHHALQNYSQAVMYLQEGL 1005
Cdd:NF040586  514 eDHPRTL-RAANNLAVSLRLLGDYREALELDREVL---RRRRRVLGPDhprtlLSANNLARDLRELGRYAEALDLLEEAL 589

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1006 RLAEQLGRREDEA---KIRHGLGLSLWASGNLEEAqHQLyrASALFEtiRHEAQLSTDYKLSLfdLQTSSYQALQRVlvs 1082
Cdd:NF040586  590 ERYREVLGGPDHPdtlRAAKSLAVALRRAGRLEEA-LEL--AEDTYE--RYRRRFGPDHPDTL--AAALSLANDLRA--- 659

                         250
                  ....*....|....*..
gi 568935436 1083 LGHHDEALAVAERGRTR 1099
Cdd:NF040586  660 LGDADEARELAREVLDR 676
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 322-485 3.63e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.19  E-value: 3.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  322 LELAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTH 401
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  402 LCIAQElsdyaaQGRAYGNMGNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLAVAYQALGAHDRALQHYQNH 481
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALS------PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ....
gi 568935436  482 LNIA 485
Cdd:COG5010   149 LGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
507-608 3.88e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 3.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  507 SRGEYVQAAPYYEQYLRLAPDLQDmegegkVCHNLGYAHYCLGNYQEAVKYyeqDLALAKDLHDklsqAKAYCNLGLAFK 586
Cdd:COG3063     4 KLGDLEEAEEYYEKALELDPDNAD------ALNNLGLLLLEQGRYDEAIAL---EKALKLDPNN----AEALLNLAELLL 70

                          90       100
                  ....*....|....*....|..
gi 568935436  587 ALLNFAKAEECQKYLLSLAQSL 608
Cdd:COG3063    71 ELGDYDEALAYLERALELDPSA 92
TPR_7 pfam13176
Tetratricopeptide repeat;
780-812 3.91e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.22  E-value: 3.91e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935436   780 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 812
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
384-490 4.00e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 4.00e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  384 IHQMKGDYDTALKLHKthlciaQELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRqelqiSMEVNdrASQASTHGNLAV 463
Cdd:COG3063     1 LYLKLGDLEEAEEYYE------KALELDPDNADALNNLGLLLLEQGRYDEAIALEK-----ALKLD--PNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 568935436  464 AYQALGAHDRALQHYQNHLNIARELRD 490
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
264-368 4.28e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.09  E-value: 4.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  264 VYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYhncvlELAQELmeKPIEMRAYAGLGH 343
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIAL-----EKALKL--DPNNAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*
gi 568935436  344 AARCMQDLERAKQYHEQQLGIAEDL 368
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSA 92
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1934-2269 4.89e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.10  E-value: 4.89e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1934 RATLPRRQTSPQARRGASKEEEEYEGFSII---SMEPLATYQGEGKTRFSPDPKQPCVKAPGGvrlSVSSKGSVSTPNSP 2010
Cdd:PHA03307   50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEApanESRSTPTWSLSTLAPASPAREGSPTPPGPS---SPDPPPPTPPPASP 126

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2011 VkmtliPSPNSPFQKVGKLASSDTGESDQSS-------TETDSTVKSQEESTPKLD-PQELAQRILEETKSHLLAVERLQ 2082
Cdd:PHA03307  127 P-----PSPAPDLSEMLRPVGSPGPPPAASPpaagaspAAVASDAASSRQAALPLSsPEETARAPSSPPAEPPPSTPPAA 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2083 RSGGPAGPDREDSVVAPSST------TVFRASETSAFSKPILShQRSQLSPLTVKPQPPARSSSLPKVS-SPATSEVSGK 2155
Cdd:PHA03307  202 ASPRPPRRSSPISASASSPApapgrsAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIwEASGWNGPSS 280

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2156 DGLSPPGSSHPSPGRDTPVS------PADPPLFRLKYPSSPYSAHISKSPR--NTSPACSAPSPALSYSSAGSARSSPAD 2227
Cdd:PHA03307  281 RPGPASSSSSPRERSPSPSPsspgsgPAPSSPRASSSSSSSRESSSSSTSSssESSRGAAVSPGPSPSRSPSPSRPPPPA 360

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 568935436 2228 APDEKVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRD 2269
Cdd:PHA03307  361 DPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRD 402
TPR_1 pfam00515
Tetratricopeptide repeat;
779-810 5.58e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 5.58e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935436   779 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 810
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 212-367 6.19e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.88  E-value: 6.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  212 EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSkddlSEARELgnMGAVYIAMGDFENAVQCHEQHLRIAKDlgsk 291
Cdd:COG4783     1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDN----PEAFAL--LGEILLQLGDLDEAIVLLHEALELDPD---- 70

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436  292 reEARAYSNLGSAYHYRRNFDKAMSYhncvleLAQELMEKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 367
Cdd:COG4783    71 --EPEARLNLGLALLKAGDYDEALAL------LEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 27-283 6.42e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.11  E-value: 6.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   27 APAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKMKLDKSPfvVVSVVGQE 106
Cdd:COG2956    42 VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAE--ALRLLAEI 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  107 LLTAGHHGASVVVLEAALKIGTCSLKLRgsvfSALSSAHWSLGNTEKSTGYMQQDLDVAKTLGdqtgecRAHGNLGSAFF 186
Cdd:COG2956   120 YEQEGDWEKAIEVLERLLKLGPENAHAY----CELAELYLEQGDYDEAIEALEKALKLDPDCA------RALLLLAELYL 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  187 SKGNYREALTnhrhqlVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARelgnmgaVYI 266
Cdd:COG2956   190 EQGDYEEAIA------ALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALAD-------LLE 256

                         250
                  ....*....|....*..
gi 568935436  267 AMGDFENAVQCHEQHLR 283
Cdd:COG2956   257 RKEGLEAALALLERQLR 273
TPR_12 pfam13424
Tetratricopeptide repeat;
335-407 6.99e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 6.99e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436   335 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 407
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
867-1091 7.12e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.53  E-value: 7.12e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  867 LHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEETD--NPTcQGRAYGNL 944
Cdd:COG4785     1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlaLPD-LAQLYYER 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  945 GLTYESLGTFERAVvyqeQHLSIAAQMNDLVAKTvsYSSLGRTHHALQNYSQAVMYLQEGLRLaeqlgrREDEAKIRHGL 1024
Cdd:COG4785    80 GVAYDSLGDYDLAI----ADFDQALELDPDLAEA--YNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436 1025 GLSLWASGNLEEAQHQLYRASALFET------IRHEAQLSTDYKLSLFDLQtssyQALQRVLVSLGHHDEALA 1091
Cdd:COG4785   148 GIALYYLGRYELAIADLEKALELDPNdperalWLYLAERKLDPEKALALLL----EDWATAYLLQGDTEEARE 216
TPR_8 pfam13181
Tetratricopeptide repeat;
779-810 8.32e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 44.31  E-value: 8.32e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935436   779 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 810
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
939-1010 1.08e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 1.08e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436   939 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 1010
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
856-958 1.13e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.76  E-value: 1.13e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  856 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQyhqlDLQIAEETDnPT 935
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALE----DFDRALELD-PD 139

                          90       100
                  ....*....|....*....|...
gi 568935436  936 cQGRAYGNLGLTYESLGTFERAV 958
Cdd:COG4785   140 -YAYAYLNRGIALYYLGRYELAI 161
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 836-968 1.46e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 1.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  836 QALVCFEKRLVvahelgEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYD 915
Cdd:COG4235     1 EAIARLRQALA------ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568935436  916 TALQYhqLDLQIAEETDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 968
Cdd:COG4235    69 EAEEL--LERALALDPDNP----EALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 851-968 1.49e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 47.26  E-value: 1.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  851 LGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEe 930
Cdd:COG5010    47 RDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN------NPELYYNLALLYSRSGDKDEAKEYYEKALALSP- 119

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 568935436  931 tDNPtcqgRAYGNLGLTYESLGTFERAVVYQEQHLSIA 968
Cdd:COG5010   120 -DNP----NAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
175-247 1.67e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 1.67e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436   175 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 247
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 752-861 1.74e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 45.75  E-value: 1.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  752 EDAIGYFEQqlaMLQQLSGNESvldRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDqakAYRGLGNGHRAT 831
Cdd:COG1729    10 DEAIAAFKA---FLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPD---ALLKLGLSYLEL 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 568935436  832 GSLQQALVCFEKrLVVAHELGEASNKAQAY 861
Cdd:COG1729    81 GDYDKARATLEE-LIKKYPDSEAAKEARAR 109
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 779-803 1.76e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.59  E-value: 1.76e-05
                            10        20
                    ....*....|....*....|....*
gi 568935436    779 RAYGNLGDCYEALGDYEEAIKYYEQ 803
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 260-373 1.93e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 1.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  260 NMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAqelmekPIEMRAYA 339
Cdd:COG4235    22 LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTEEAEELLERALALD------PDNPEALY 89

                          90       100       110
                  ....*....|....*....|....*....|....
gi 568935436  340 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAA 373
Cdd:COG4235    90 LLGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
352-584 1.98e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  352 ERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAaqgRAYGNMGNAYNALGMY 431
Cdd:COG4785    17 AAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDR----ALALPDLA---QLYYERGVAYDSLGDY 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  432 DQAVKYHRQELQIsmevndRASQASTHGNLAVAYQALGAHDRALQHYqnhlNIARELRDiqSEARALSNLGNFHCSRGEY 511
Cdd:COG4785    90 DLAIADFDQALEL------DPDLAEAYNNRGLAYLLLGDYDAALEDF----DRALELDP--DYAYAYLNRGIALYYLGRY 157

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436  512 VQAAPYYEQYLRLAPDLQDMegegkvcHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQAKAYCNLGLA 584
Cdd:COG4785   158 ELAIADLEKALELDPNDPER-------ALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARELFKLALA 223
TPR_12 pfam13424
Tetratricopeptide repeat;
655-727 2.05e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 2.05e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436   655 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRK 727
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 562-724 2.07e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.88  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  562 LALAKDLHDKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQ 641
Cdd:COG5010     1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  642 LGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYhtqeLEVYQELSdlPGECRAHGHLAAVYMALGKYTMAFKCYQEQ 721
Cdd:COG5010    81 LQLDPN------NPELYYNLALLYSRSGDKDEAKEY----YEKALALS--PDNPNAYSNLAALLLSLGQDDEAKAALQRA 148


                  ...
gi 568935436  722 LEL 724
Cdd:COG5010   149 LGT 151
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 513-642 2.67e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.77  E-value: 2.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  513 QAAPYYEQYLRLAPDlqdmEGEGKVchNLGYAHYCLGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFA 592
Cdd:COG4235     1 EAIARLRQALAANPN----DAEGWL--LLGRAYLRLGRYDEALAAYEKALRLDPD------NADALLDLAEALLAAGDTE 68

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935436  593 KAEEcqkyLLSLAQSLDNSQAkfRALGNLGDIFICKKDINGAIKFYEQQL 642
Cdd:COG4235    69 EAEE----LLERALALDPDNP--EALYLLGLAAFQQGDYAEAIAAWQKLL 112
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
907-1011 2.73e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 2.73e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  907 VYQQMGEYDTALQYHQLDLQIAEEtdnptcQGRAYGNLGLTYESLGTFERAVVYQEqhlSIAAQMNDLVAktvsYSSLGR 986
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK---ALKLDPNNAEA----LLNLAE 67

                          90       100
                  ....*....|....*....|....*
gi 568935436  987 THHALQNYSQAVMYLQEGLRLAEQL 1011
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSA 92
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
548-645 2.84e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.78  E-value: 2.84e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  548 LGNYQEAVKYYEQDLALAKDlhdklsQAKAYCNLGLAFKALLNFAKAEECQKyllslAQSLDNSQAkfRALGNLGDIFIC 627
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNA--EALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 568935436  628 KKDINGAIKFYEQQLGLS 645
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 774-928 3.28e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.49  E-value: 3.28e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  774 VLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELge 853
Cdd:COG5010    10 LPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQ----ALQL-- 83

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436  854 ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTALQYHQLDLQIA 928
Cdd:COG5010    84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPD------NPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1967-2266 3.32e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 3.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1967 PLATYQGEGKTRFSPDPKQPCVKA----PGGVRLSVSSKGSVSTPNSPvKMTLIPSPNSPfqkvgKLASSDTGESDQSST 2042
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSrarrPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2043 ETDSTVKSQEESTPKLDPQELAqrileetkshllAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAfsKPILSHQR 2122
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDP------------APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV--GSLTSLAD 2700

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2123 SQLSPLTVKPQPPARSSSLPKVSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPlfRLKYPSSPYSAHISKSPRNT 2202
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA--RPPTTAGPPAPAPPAAPAAG 2778

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935436 2203 SPACSAPSPALSYSSAGSARSSPADAPDEKVQAVHSLKML-WQSTPQPPRGPRKTCRGAPGTLTS 2266
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALpPAASPAGPLPPPTSAQPTAPPPPP 2843
TPR_7 pfam13176
Tetratricopeptide repeat;
497-532 3.35e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.91  E-value: 3.35e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935436   497 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 532
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
628-728 4.63e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 44.01  E-value: 4.63e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  628 KKDINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHtqelevyQELSDLPGECRAHGHLAAVYMA 707
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALE-------KALKLDPNNAEALLNLAELLLE 71

                          90       100
                  ....*....|....*....|.
gi 568935436  708 LGKYTMAFKCYQEQLELGRKL 728
Cdd:COG3063    72 LGDYDEALAYLERALELDPSA 92
TPR_12 pfam13424
Tetratricopeptide repeat;
616-687 4.63e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 4.63e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436   616 RALGNLGDIFICKKDINGAIKFYEQQLGLSHHV--KDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 687
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
776-946 5.10e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.83  E-value: 5.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  776 DRGRAYGNLGDCYEALGDYEEAIKYYEQylsvAQSLNrmQDQAKAYRGLGNGHRATGSLQQALVCFEKrlvvAHELgeAS 855
Cdd:COG4785    71 DLAQLYYERGVAYDSLGDYDLAIADFDQ----ALELD--PDLAEAYNNRGLAYLLLGDYDAALEDFDR----ALEL--DP 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  856 NKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALesdaacgLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT 935
Cdd:COG4785   139 DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAL-------WLYLAERKLDPEKALALLLEDWATAYLLQGDT 211

                         170
                  ....*....|.
gi 568935436  936 CQGRAYGNLGL 946
Cdd:COG4785   212 EEARELFKLAL 222
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1932-2337 5.18e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.17  E-value: 5.18e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1932 PQRATLPRRQTSPQARRGASKEEEEYEGFSI-ISMEPLATYQGEGKTRFSPDPKqPCVKAPGGVRLSVSSKGSVSTPNSP 2010
Cdd:PHA03247 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAArPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALP 2736

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2011 VKMTLIPSPNSPfqkvgklaSSDTGESDQSSTETDSTVKSqeeSTPKLDPQELAQRILEETKSHLLAVerlQRSGGPAGP 2090
Cdd:PHA03247 2737 AAPAPPAVPAGP--------ATPGGPARPARPPTTAGPPA---PAPPAAPAAGPPRRLTRPAVASLSE---SRESLPSPW 2802

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2091 DRED--SVVAPSSTTVFRASETSAFSKPilshqrsqlsPLTVKPQPPARSSSLPKVSSPATSEVSgkDGLSPPGSSHPSP 2168
Cdd:PHA03247 2803 DPADppAAVLAPAAALPPAASPAGPLPP----------PTSAQPTAPPPPPGPPPPSLPLGGSVA--PGGDVRRRPPSRS 2870

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2169 GRDTPVSPADPPLFRLKYPSSPYSAHISKSPRNTSPACSAPSPAlsyssagsarSSPADAPDEKVQAvhslkmlwQSTPQ 2248
Cdd:PHA03247 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP----------PPPQPQPQPPPPP--------QPQPP 2932

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2249 PPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGKEEGG---ADRLELKELSVQRHDEVPPKVPTNGHWCTDTATLTTAGG 2325
Cdd:PHA03247 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGrvaVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012

                         410
                  ....*....|..
gi 568935436 2326 RSTTAAPRPLRL 2337
Cdd:PHA03247 3013 LHEETDPPPVSL 3024
TPR_7 pfam13176
Tetratricopeptide repeat;
258-291 5.74e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.14  E-value: 5.74e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935436   258 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSK 291
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
COG3899 COG3899
Predicted ATPase [General function prediction only];
846-1233 9.21e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 47.93  E-value: 9.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  846 VVAHELGEASNKAQAYGEL---GSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQMGEYDTALQYhq 922
Cdd:COG3899   690 ELAHHLNRAGERDRAARLLlraARRALARGAYAEALRYLERALELLPPDPEEEYRLALLLELAEALYLAGRFEEAEAL-- 767

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  923 ldlqiaeetdnptcqgraygnlgltyeslgtFERAVVYQEQHLSIAAQMNDLVAKTVSYSSLGRTHhaLQNYSQAVMYLQ 1002
Cdd:COG3899   768 -------------------------------LERALAARALAALAALRHGNPPASARAYANLGLLL--LGDYEEAYEFGE 814

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1003 EGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFETIRHEAQLSTDYKLSLFDLQTSSYQALQRVLVS 1082
Cdd:COG3899   815 LALALAERLGDRRLEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAA 894

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1083 LGHHDEALAVAERGRTRAFADLLVERQTGQQDSDPYSPITIDQILEMVNAQRGLVLYYSLAAGYLYSWLLAPGAGILKFH 1162
Cdd:COG3899   895 RLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAA 974

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935436 1163 EHYLGDNSVESSSDFQAGSSAALPVATNSTLEQHIASVREALGVESYYSRACASSETESEAGDIMEQQLEE 1233
Cdd:COG3899   975 AAAAAAAAAAAAAAAALEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALAL 1045
PHA03378 PHA03378
EBNA-3B; Provisional
 2011-2334 1.05e-04

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 47.75  E-value: 1.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2011 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESTPKLDPQELaQRILEETKSHLlaverlqRSGG 2086
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQL-------ASSA 589

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2087 PAGPDREDSVVAPSS-----TTVFRASETSA----------------------FSKPILS--HQRSQLSPLTVK------ 2131
Cdd:PHA03378  590 PSYAQTPWPVPHPSQtpeppTTQSHIPETSAprqwpmplrpipmrplrmqpitFNVLVFPtpHQPPQVEITPYKptwtqi 669

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2132 ------PQPPARSSSLPKVSSPATSEVSGKdglsppgsshpspgRDTPVSPADPPLFRLKYPSSPYSAH--ISKSPRNTS 2203
Cdd:PHA03378  670 ghipyqPSPTGANTMLPIQWAPGTMQPPPR--------------APTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRAR 735

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2204 PACSAPSPALSYSSAGSARSSPADAPDE-KVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGK 2282
Cdd:PHA03378  736 PPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935436 2283 EEGGADRLELKELSVQRHDEVPPkvptnghwctdTATLTTAGGRSTTAAPRP 2334
Cdd:PHA03378  816 GQQGPTKQILRQLLTGGVKRGRP-----------SLKKPAALERQAAAGPTP 856
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 752-838 1.40e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 1.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  752 EDAIGYFEQQLAMLQqlsgnesvlDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVA-QSLNRMQDQAKAYRGLGNGHRA 830
Cdd:COG5010    71 EESLALLEQALQLDP---------NNPELYYNLALLYSRSGDKDEAKEYYEKALALSpDNPNAYSNLAALLLSLGQDDEA 141


                  ....*...
gi 568935436  831 TGSLQQAL 838
Cdd:COG5010   142 KAALQRAL 149
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
348-445 1.69e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 1.69e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  348 MQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGDYDTALKLHKthlciAQELSDYAAQgrAYGNMGNAYNA 427
Cdd:COG3063     5 LGDLEEAEEYYEKALELDPD------NADALNNLGLLLLEQGRYDEAIALEK-----ALKLDPNNAE--ALLNLAELLLE 71

                          90
                  ....*....|....*...
gi 568935436  428 LGMYDQAVKYHRQELQIS 445
Cdd:COG3063    72 LGDYDEALAYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
776-845 1.80e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.46  E-value: 1.80e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  776 DRGRAYGNLGDCYEALGDYEEAIKYyeqylsvAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRL 845
Cdd:COG3063    24 DNADALNNLGLLLLEQGRYDEAIAL-------EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 917-1096 1.81e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 46.91  E-value: 1.81e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  917 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDLVAktvsYSSLGRTHHALQNYSQ 996
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL----LELAALLLQALGRYEE 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  997 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRAsalfetirheAQLSTDYklslfdlqTSSYQAL 1076
Cdd:COG3914    97 ALALYRRALALNP------DNAEALFNLGNLLLALGRLEEALAALRRA----------LALNPDF--------AEAYLNL 152

                         170       180
                  ....*....|....*....|
gi 568935436 1077 QRVLVSLGHHDEALAVAERG 1096
Cdd:COG3914   153 GEALRRLGRLEEAIAALRRA 172
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 217-317 2.00e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.46  E-value: 2.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  217 ALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAVQCHEQHLRIAKDlgskreEAR 296
Cdd:COG4235    19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALL------DLAEALLAAGDTEEAEELLERALALDPD------NPE 86

                          90       100
                  ....*....|....*....|.
gi 568935436  297 AYSNLGSAYHYRRNFDKAMSY 317
Cdd:COG4235    87 ALYLLGLAAFQQGDYAEAIAA 107
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 536-567 2.00e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 2.00e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935436   536 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 567
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 792-883 2.51e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 42.67  E-value: 2.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  792 GDYEEAIKYYEQYLSVAQSLNRmqdQAKAYRGLGNGHRATGSLQQALVCFEKrlvVAHELGEASNKAQAYGELGSLHSQL 871
Cdd:COG1729     7 GDYDEAIAAFKAFLKRYPNSPL---APDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLEL 80

                          90
                  ....*....|..
gi 568935436  872 GNYEQAISCLER 883
Cdd:COG1729    81 GDYDKARATLEE 92
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 1964-2340 2.86e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 46.30  E-value: 2.86e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  1964 SMEPLATyqGEGKTRFSPD----PKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTL------IPSPNSPFQKVGKLASSD 2033
Cdd:pfam03154   13 SMSTLRS--GRKKQTASPDgrasPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSkkikeeAPSPLKSAKRQREKGASD 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2034 TGESDQSSTETDstvKSQEESTPKlDPQE------LAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRA 2107
Cdd:pfam03154   91 TEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQI 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2108 SETSafsKPILSHQrsqlSPLTVKPQPPARSSSLPKVSSPATSEVSgkdglsppgsshpspGRDTPVSPADPPLFRLKYP 2187
Cdd:pfam03154  167 LQTQ---PPVLQAQ----SGAASPPSPPPPGTTQAATAGPTPSAPS---------------VPPQGSPATSQPPNQTQST 224

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2188 SSPYSAhISKSPRNTSPACSAPSPALsyssagsaRSSPADAPDEKVQAvhslkmlwQSTPQPP-RGPrktcrGAPGTLTs 2266
Cdd:pfam03154  225 AAPHTL-IQQTPTLHPQRLPSPHPPL--------QPMTQPPPPSQVSP--------QPLPQPSlHGQ-----MPPMPHS- 281

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  2267 krdvlslLNLSPRHGKEEGGADRLELKELSVQRHDEVPPKVPTNGHwctDTATLTTAGGRSTTAAPRPLR---LPLA 2340
Cdd:pfam03154  282 -------LQTGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSPAAPGQ---SQQRIHTPPSQSQLQSQQPPReqpLPPA 348
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
224-330 2.93e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  224 VYTAIGDYPNALASHKQCVLLAKqskdDLSEAreLGNMGAVYIAMGDFENAVQChEQHLRIAKDlgskreEARAYSNLGS 303
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDP----DNADA--LNNLGLLLLEQGRYDEAIAL-EKALKLDPN------NAEALLNLAE 67

                          90       100
                  ....*....|....*....|....*..
gi 568935436  304 AYHYRRNFDKAMSYHNCVLELAQELME 330
Cdd:COG3063    68 LLLELGDYDEALAYLERALELDPSALR 94
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 293-397 3.33e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.69  E-value: 3.33e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  293 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEkpiemrAYAGLGHAARCMQDLERAKQYHEQQLGIAEDlkdra 372
Cdd:COG4235    15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALDPD----- 83

                          90       100
                  ....*....|....*....|....*
gi 568935436  373 aEGRASSNLGIIHQMKGDYDTALKL 397
Cdd:COG4235    84 -NPEALYLLGLAAFQQGDYAEAIAA 107
TPR_7 pfam13176
Tetratricopeptide repeat;
417-452 3.43e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.83  E-value: 3.43e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935436   417 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 452
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_8 pfam13181
Tetratricopeptide repeat;
858-890 4.09e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.69  E-value: 4.09e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935436   858 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 890
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 779-806 4.14e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.43  E-value: 4.14e-04
                           10        20
                   ....*....|....*....|....*...
gi 568935436   779 RAYGNLGDCYEALGDYEEAIKYYEQYLS 806
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 536-567 4.68e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.68e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 568935436    536 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 567
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 295-327 4.81e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.81e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 568935436    295 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 327
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 376-584 7.67e-04

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 44.91  E-value: 7.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  376 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEV---ND 450
Cdd:NF040586  521 RAANNLAVSLRLLGDYREALELDREVLRRRRRVlgPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlggPD 600

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  451 RASQASTHGNLAVAYQALGAHDRALQHyqnHLNIARELRDIQSEA-----RALSNLGNFHCSRGEYVQAapyyeqyLRLA 525
Cdd:NF040586  601 HPDTLRAAKSLAVALRRAGRLEEALEL---AEDTYERYRRRFGPDhpdtlAAALSLANDLRALGDADEA-------RELA 670

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436  526 PD----LQDMEGEGkvcH--------NLGYAHYCLGNYQEAVKYYEQDLALakdLHDKLSQAKAY---CNLGLA 584
Cdd:NF040586  671 REvldrYRRVLGED---HpftlacrnNLAVLLRALGDPEEARELAEAALEG---LRERLGPDHPYtlaAAVNLA 738
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
262-399 7.99e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 43.37  E-value: 7.99e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  262 GAVYIAMGDFENAVQCHEQHLRIAKDLgskreeARAYSNLGSAYHYRRNFDKAMSYHNCVLELaqelmeKPIEMRAYAGL 341
Cdd:COG4785    80 GVAYDSLGDYDLAIADFDQALELDPDL------AEAYNNRGLAYLLLGDYDAALEDFDRALEL------DPDYAYAYLNR 147

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935436  342 GHA-------ARCMQDLERAKQYHEQQ------LGIAE-DLKDRAAEGRASSNLGIIHQMKGDYDTALKLHK 399
Cdd:COG4785   148 GIAlyylgryELAIADLEKALELDPNDperalwLYLAErKLDPEKALALLLEDWATAYLLQGDTEEARELFK 219
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 752-888 8.19e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 42.25  E-value: 8.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  752 EDAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEqylsvaqslnrmqDQAKAYRGLGNGHRAT 831
Cdd:COG5010    35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP-------------NNPELYYNLALLYSRS 101

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 568935436  832 GSLQQALVCFEKrlvvAHELgeASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 888
Cdd:COG5010   102 GDKDEAKEYYEK----ALAL--SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 2084-2356 8.26e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 8.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2084 SGGPAGPDREDSVVAPSST--TVFRASETSafskPILSHQRSQLSPLTVKPQP--PARSSSLPKVSSPaTSEVSgkdgLS 2159
Cdd:pfam05109  446 TGLPSSTHVPTNLTAPASTgpTVSTADVTS----PTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSP-TSAVT----TP 516

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2160 PPGSSHPSPGRDTPVSPADPPLFRLKYPSS----PYSAHISKSPRNTSPACSAPSPALSYSSAGSARSSP---ADAP--- 2229
Cdd:pfam05109  517 TPNATSPTPAVTTPTPNATSPTLGKTSPTSavttPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPtvg 596

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  2230 DEKVQAVHSLKML--WQSTP---QPPRGPRKTCRGAPGTLTSKRDvlSLLNLSPRHGKEEGGAdrlELKELSVQRHDEVP 2304
Cdd:pfam05109  597 ETSPQANTTNHTLggTSSTPvvtSPPKNATSAVTTGQHNITSSST--SSMSLRPSSISETLSP---STSDNSTSHMPLLT 671

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 568935436  2305 PKVPTNGHWCTDTATLTTAGGRSTTA--APRPLRLPLANGykflsPGRLFPSSK 2356
Cdd:pfam05109  672 SAHPTGGENITQVTPASTSTHHVSTSspAPRPGTTSQASG-----PGNSSTSTK 720
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 858-891 9.58e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.58e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 568935436    858 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 891
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 917-1044 1.22e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  917 ALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAqmNDLVAktvsYSSLGRTHHALQNYSQ 996
Cdd:COG5010    33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDP--NNPEL----YYNLALLYSRSGDKDE 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 568935436  997 AVMYLQEGLRLAEqlgrreDEAKIRHGLGLSLWASGNLEEAQHQLYRA 1044
Cdd:COG5010   107 AKEYYEKALALSP------DNPNAYSNLAALLLSLGQDDEAKAALQRA 148
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 368-501 1.50e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  368 LKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDyaaqgrAYGNMGNAYNALGMYDQAVKYHRQELQISme 447
Cdd:COG4235    10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD------ALLDLAEALLAAGDTEEAEELLERALALD-- 81

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 568935436  448 vndrASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEARALSNL 501
Cdd:COG4235    82 ----PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 909-1041 1.59e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  909 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 988
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935436  989 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1041
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 416-440 1.61e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 1.61e-03
                            10        20
                    ....*....|....*....|....*
gi 568935436    416 RAYGNMGNAYNALGMYDQAVKYHRQ 440
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 406-527 1.72e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.72e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  406 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 477
Cdd:PRK11447  294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935436  478 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:PRK11447  374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
TPR_1 pfam00515
Tetratricopeptide repeat;
495-527 2.00e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 2.00e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935436   495 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 527
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 858-920 2.07e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 2.07e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436  858 AQAYGELGSLHSQLGNYEQAISCLERqlnIARDMKDRALESDAACGLGGVYQQMGEYDTALQY 920
Cdd:COG1729    30 PDALYWLGEAYYALGDYDEAAEAFEK---LLKRYPDSPKAPDALLKLGLSYLELGDYDKARAT 89
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 553-677 2.21e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.37  E-value: 2.21e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  553 EAVKYYEQdlALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQslDNSQAkfraLGNLGDIFICKKDIN 632
Cdd:COG4235     1 EAIARLRQ--ALAANPND----AEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA----LLDLAEALLAAGDTE 68

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568935436  633 GAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGY 677
Cdd:COG4235    69 EAEELLERALALDPD------NPEALYLLGLAAFQQGDYAEAIAA 107
ycf3 CHL00033
photosystem I assembly protein Ycf3
 386-527 2.27e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  386 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 463
Cdd:CHL00033   46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935436  464 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 527
Cdd:CHL00033  115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
ycf3 CHL00033
photosystem I assembly protein Ycf3
 451-565 2.51e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  451 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 529
Cdd:CHL00033   31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 568935436  530 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 565
Cdd:CHL00033  108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-224 2.52e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 43.06  E-value: 2.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   27 APAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMveaamkspmrdtleptyqqlqkmkldkspfvvvsvvGQE 106
Cdd:COG3914    78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL------------------------------------GNL 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  107 LLTAGHHGASVVVLEAALKIGtcslklrgsvfSALSSAHWSLGNTEKSTGYMQQDLDVAKT-LGDQTGECRAHGNLGSAF 185
Cdd:COG3914   122 LLALGRLEEALAALRRALALN-----------PDFAEAYLNLGEALRRLGRLEEAIAALRRaLELDPDNAEALNNLGNAL 190

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 568935436  186 FSKGNYREALTNHRHqlVLAMKLKDREAASSALSSLGHV 224
Cdd:COG3914   191 QDLGRLEEAIAAYRR--ALELDPDNADAHSNLLFALRQA 227
TPR_1 pfam00515
Tetratricopeptide repeat;
416-444 2.58e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.58e-03
                           10        20
                   ....*....|....*....|....*....
gi 568935436   416 RAYGNMGNAYNALGMYDQAVKYHRQELQI 444
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 157-475 2.62e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.98  E-value: 2.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  157 YMQQDLDVAKTLGDQTGEC-------------RAHGNLGSAFFSKGNYREALTNHRHqlVLAMKLKDREAASS------A 217
Cdd:NF040586  403 YLRGDYESARDLAERALERwrerlgpddrqtlRLRFHLANALRSLGRYEEARELDED--TLERQRRVLGLGEDhphtlmT 480

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  218 LSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDlSEAREL---GNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREE 294
Cdd:NF040586  481 AGGLGADLRALGRFREALELDEETLERHRRVFGE-DHPRTLraaNNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHP 559

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  295 ARaysnLGSAYHYrrnfdkamsyhncvlelaqelmekpieMRAYAGLGHAARCMQDLERAKQYHEQQLGIAedlkDRAAE 374
Cdd:NF040586  560 RT----LLSANNL---------------------------ARDLRELGRYAEALDLLEEALERYREVLGGP----DHPDT 604

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  375 GRASSNLGIIHQMKGDYDTALKLHKthlciaqelSDYAAQGRAYG-----------NMGNAYNALGMYDQAvkyhrqeLQ 443
Cdd:NF040586  605 LRAAKSLAVALRRAGRLEEALELAE---------DTYERYRRRFGpdhpdtlaaalSLANDLRALGDADEA-------RE 668

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 568935436  444 ISMEVNDRASQA------STHG---NLAVAYQALGAHDRAL 475
Cdd:NF040586  669 LAREVLDRYRRVlgedhpFTLAcrnNLAVLLRALGDPEEAR 709
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
420-525 2.68e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.79  E-value: 2.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  420 NMGNAYNALGMYDQAVKYHRQELQismevndRASQASTHG--NLAVAYQALGAHDRALQHyqnhlniARELRDIQSE--- 494
Cdd:COG4700    94 RLADALLELGRYDEAIELYEEALT-------GIFADDPHIllGLAQALFELGRYAEALET-------LEKLIAKNPDfks 159

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 568935436  495 -------ARALSNLGNFHCSRGEYVQAA---PYYEQYLRLA 525
Cdd:COG4700   160 sdahllyARALEALGDLEAAEAELEALArrySGPEARYRYA 200
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 463-560 2.85e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.59  E-value: 2.85e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  463 VAYQALGAHDRALQHYQNhlnIARELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMEgegKVCHNLG 542
Cdd:COG1729     1 KALLKAGDYDEAIAAFKA---FLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP---DALLKLG 74

                          90
                  ....*....|....*...
gi 568935436  543 YAHYCLGNYQEAVKYYEQ 560
Cdd:COG1729    75 LSYLELGDYDKARATLEE 92
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 255-287 3.69e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.69e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 568935436    255 ARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 287
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 695-724 3.76e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.76e-03
                            10        20        30
                    ....*....|....*....|....*....|
gi 568935436    695 CRAHGHLAAVYMALGKYTMAFKCYQEQLEL 724
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
TPR_1 pfam00515
Tetratricopeptide repeat;
536-567 3.79e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 3.79e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935436   536 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 567
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
COG3899 COG3899
Predicted ATPase [General function prediction only];
104-516 4.22e-03

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 42.54  E-value: 4.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  104 GQELLTAGHHGASVVVLEAALKIGTCSL-------KLRGSVFSALSSAHWSLGNTEKSTGYMQQDLDVAKTLGDQTGECR 176
Cdd:COG3899   752 AEALYLAGRFEEAEALLERALAARALAAlaalrhgNPPASARAYANLGLLLLGDYEEAYEFGELALALAERLGDRRLEAR 831

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  177 AHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEAR 256
Cdd:COG3899   832 ALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAA 911

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  257 ELGnMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKPIEMR 336
Cdd:COG3899   912 ALA-AAELARLAAAAAAAAALALAAAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAAAAAAAAAAA 990

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  337 AYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGR 416
Cdd:COG3899   991 LEAAAAALLALLAAAAAAAAAAAALAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLA 1070

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  417 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSEAR 496
Cdd:COG3899  1071 AAAAAAAAAAAAAAAAALAAALAAAALAAAAAAALALAAALAALALAAALAALALAAAARAAAALLLLAAALALALAALL 1150

                         410       420
                  ....*....|....*....|
gi 568935436  497 ALSNLGNFHCSRGEYVQAAP 516
Cdd:COG3899  1151 LLAALLLALALLLLALAALA 1170
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 779-1107 4.69e-03

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 42.21  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  779 RAYGNLGDCYEALGDYEEAikyYEqyLSVAqSLNRMQDQakayRGLGNGH--------------RATGSLQQALVCFEKR 844
Cdd:NF040586  435 RLRFHLANALRSLGRYEEA---RE--LDED-TLERQRRV----LGLGEDHphtlmtagglgadlRALGRFREALELDEET 504

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  845 LVVAHEL-GE--------ASNKAQAYGELGSLHSQLGNYEQAiscLERQLNIARDMKDRALESdaACGLGGVYQQMGEYD 915
Cdd:NF040586  505 LERHRRVfGEdhprtlraANNLAVSLRLLGDYREALELDREV---LRRRRRVLGPDHPRTLLS--ANNLARDLRELGRYA 579

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  916 TALQY----HQLDLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAV------------VYQEQH-LSIAAQMndlvakt 978
Cdd:NF040586  580 EALDLleeaLERYREVLGGPDHPD-TLRAAKSLAVALRRAGRLEEALelaedtyeryrrRFGPDHpDTLAAAL------- 651

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436  979 vsysSLGRTHHALQNYSQAVMYLQEGL-RLAEQLGRRedeakirH--------GLGLSLWASGNLEEAQHQLYRASALFe 1049
Cdd:NF040586  652 ----SLANDLRALGDADEARELAREVLdRYRRVLGED-------HpftlacrnNLAVLLRALGDPEEARELAEAALEGL- 719

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935436 1050 tirhEAQLSTDYKLSLfdlqtSSYQALQRVLVSLGHHDEAL-AVAERGRTRAFADLLVE 1107
Cdd:NF040586  720 ----RERLGPDHPYTL-----AAAVNLANDLAALGDLDAALgEEALERLRRLLGEDLRA 769
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 2116-2254 5.22e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 5.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2116 PILSHQRSQLSPLTVKPQPPARSSSLPKVSSPATSEvsgkdglsppgsshpspgrdTPVSPADPplFRLKYPSSPYSAHI 2195
Cdd:PTZ00449  563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK--------------------RPRSAQRP--TRPKSPKLPELLDI 620

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935436 2196 SKSPRN----TSPAcSAPSPalsyssagSARSSPadapdEKVQAVHSLKmlwqsTPQPPRGPR 2254
Cdd:PTZ00449  621 PKSPKRpespKSPK-RPPPP--------QRPSSP-----ERPEGPKIIK-----SPKPPKSPK 664
TPR_1 pfam00515
Tetratricopeptide repeat;
295-327 5.79e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 5.79e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935436   295 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 327
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
457-490 5.84e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.36  E-value: 5.84e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935436   457 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 490
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
TPR_10 pfam13374
Tetratricopeptide repeat;
539-569 6.61e-03

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 6.61e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 568935436   539 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 569
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1980-2252 7.62e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.70  E-value: 7.62e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 1980 SPDPKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVK--SQEESTPK 2057
Cdd:PHA03307  178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwGPENECPL 257

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2058 LDPQELAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAFSKPILShqrsqlspltvkpqpPAR 2137
Cdd:PHA03307  258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS---------------SSR 322

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436 2138 SSSLPKVSSpaTSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPLFR-----LKYPSSPYSAHISKSPRNTSPACSAPS-P 2211
Cdd:PHA03307  323 ESSSSSTSS--SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkrprpSRAPSSPAASAGRPTRRRARAAVAGRArR 400

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 568935436 2212 ALSYSSAGSARSSP----ADAPDEKVQAVHSLKML----WQSTPQPPRG 2252
Cdd:PHA03307  401 RDATGRFPAGRPRPspldAGAASGAFYARYPLLTPsgepWPGSPPPPPG 449
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 210-489 8.14e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 40.76  E-value: 8.14e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   210 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLG 289
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   290 SKREEA--RAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 366
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPD-AAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935436   367 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 440
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259

                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 568935436   441 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 489
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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