|
Name |
Accession |
Description |
Interval |
E-value |
| TPR_MLP1_2 |
pfam07926 |
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of ... |
1112-1238 |
7.95e-27 |
|
TPR/MLP1/MLP2-like protein; The sequences featured in this family are similar to a region of human TPR protein and to yeast myosin-like proteins 1 (MLP1) and 2 (MLP2). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores. TPR is thought to be a component of nuclear pore complex- attached intra-nuclear filaments, and is implicated in nuclear protein import. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerization of kinase domains or by targeting these kinases to the nuclear pore complex. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity.
Pssm-ID: 462316 [Multi-domain] Cd Length: 129 Bit Score: 107.34 E-value: 7.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1112 LSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQK 1191
Cdd:pfam07926 3 LSSLQSEIKRLKEEAADAEAQLQKLQEDLEKQAEIAREAQQNYERELVLHAEDIKALQALREELNELKAEIAELKAEAES 82
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568907995 1192 AESQLLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKL 1238
Cdd:pfam07926 83 AKAELEESEESWEEQKKELEKELSELEKRIEDLNEQNKLLHDQLESL 129
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
847-1687 |
5.20e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 111.30 E-value: 5.20e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 847 KLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLNS---QIEKLEHEIS 923
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAlanEISRLEQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 924 HLKKKLENEVEQRhtltRNLDVQLLDTKRQLD-TEINLHLNTKEL------LKNAQKDIATLKQHLNNMEAQLASQSTQR 996
Cdd:TIGR02168 306 ILRERLANLERQL----EELEAQLEELESKLDeLAEELAELEEKLeelkeeLESLEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 997 TGQpgdRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLnkEKQVTEEVHKNIEVRLKESAEFQTQL 1076
Cdd:TIGR02168 382 ETL---RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1077 EKKLMEVEKEKQELQDDKRK--AIESMEQQLSELKKTLSTVQNEVQEaLQRASTALSNEQQARRDCQEQAKIAVEAQNKY 1154
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQAldAAERELAQLQARLDSLERLQENLEG-FSEGVKALLKNQSGLSGILGVLSELISVDEGY 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1155 EREL------MLHAADVEALQAAKEQVSKMT---SIRQHLEETTQKAESQLleckaswEERERVLKDEVSKSVSRCEDLE 1225
Cdd:TIGR02168 536 EAAIeaalggRLQAVVVENLNAAKKAIAFLKqneLGRVTFLPLDSIKGTEI-------QGNDREILKNIEGFLGVAKDLV 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1226 KQNRLLHDQIEKLSD--KVVTSMKDAVQ-------APLNVSLNEE---------GKSQEQILEILRfirREKEIAETRFE 1287
Cdd:TIGR02168 609 KFDPKLRKALSYLLGgvLVVDDLDNALElakklrpGYRIVTLDGDlvrpggvitGGSAKTNSSILE---RRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1288 VAQVESlryrqrvellerelqeLQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNkmLREEKERLEQNLQQMQA 1367
Cdd:TIGR02168 686 IEELEE----------------KIAELEKALAELRKELEELEEELEQLRKELEELSRQISA--LRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1368 KVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDpDTEEYRKLLSEKEIHTKRIQQLNEEV 1447
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA-LREALDELRAELTLLNEEAANLRERL 826
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1448 GRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKA 1527
Cdd:TIGR02168 827 ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1528 metstqssgdHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEK-ETEARSLQEQTVQLQSELSRLRQDLqd 1606
Cdd:TIGR02168 907 ----------ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEySLTLEEAEALENKIEDDEEEARRRL-- 974
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1607 ktteeqlrqqmnektwktlALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELdvrmTALKSQYEGRISRLERELR 1686
Cdd:TIGR02168 975 -------------------KRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDL----TEAKETLEEAIEEIDREAR 1031
|
.
gi 568907995 1687 E 1687
Cdd:TIGR02168 1032 E 1032
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
195-1125 |
1.73e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 93.20 E-value: 1.73e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 195 EAEKRdLIRTNERLSQeVEYLTEDVKRlneklkesnttkgelQLKLDELQASdVAVKYREKRlEQEKELLHNQNSWLNTE 274
Cdd:TIGR02168 176 ETERK-LERTRENLDR-LEDILNELER---------------QLKSLERQAE-KAERYKELK-AELRELELALLVLRLEE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 275 LKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNeln 354
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN--- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 355 ahikLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEkEMLEKIGKLEKELENANDLL 434
Cdd:TIGR02168 314 ----LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE-ELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 435 SATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQEnkRINKYLDEIVKEVEAKAPILKRQ 514
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE--ELEEELEELQEELERLEEALEEL 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 515 REEYERAQKAVASLSAKLEQAMKEI---QRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRV-------LLMELEEA 584
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLdslERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGR 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 585 RGNHVIRDEEVSSADIssssEVISQHLVSYRNIEELQQQNQRLLFALRELGETREREEQETTSSkiaelqhkLENSLAEL 664
Cdd:TIGR02168 547 LQAVVVENLNAAKKAI----AFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD--------LVKFDPKL 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 665 EQLRESRQHQMQLVDSIVRQRDMYRILLSQTTgmaiplqASSLDDISLlstpkrssTSQTVSTPAPEPVIDSTeaIEAKA 744
Cdd:TIGR02168 615 RKALSYLLGGVLVVDDLDNALELAKKLRPGYR-------IVTLDGDLV--------RPGGVITGGSAKTNSSI--LERRR 677
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 745 ALKQLQEIFEnykkEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLT 824
Cdd:TIGR02168 678 EIEELEEKIE----ELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 825 ATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLsevRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSE 904
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE---ELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 905 TETK------QRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVqLLDTKRQLDTEINLHlntKELLKNAQKDIATL 978
Cdd:TIGR02168 831 RRIAaterrlEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA-LLNERASLEEALALL---RSELEELSEELREL 906
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 979 KQHLNNMEAQLASQstqrtgqpgdRDDVDDLKSQLRQAEEQVNDLKERLKTSTSN-----VEQYRAMVTSLEDSLNKEKQ 1053
Cdd:TIGR02168 907 ESKRSELRRELEEL----------REKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaEALENKIEDDEEEARRRLKR 976
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1054 VTEEVHKNIEVRLKESAEFQtQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQR 1125
Cdd:TIGR02168 977 LENKIKELGPVNLAAIEEYE-ELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVNENFQR 1047
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
859-1717 |
3.47e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.05 E-value: 3.47e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 859 KKEKEMLKLSEVRLSQQRESLLAEQRGQNL---------------LLTNLQTIQGILERSEtetKQRLNSQIEKLEHEIS 923
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEKRQQLerlrrerekaeryqaLLKEKREYEGYELLKE---KEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 924 HLKKKLENEVEQRHTLTRNLdVQLLDTKRQLDTEINlHLNTKELLKnAQKDIATLKQHLNNMEAQLASQstqrtgqpgdR 1003
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRL-EEIEQLLEELNKKIK-DLGEEEQLR-VKEKIGELEAEIASLERSIAEK----------E 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1004 DDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEvrlKESAEFQTqLEKKLMEV 1083
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELE---EVDKEFAE-TRDELKDY 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1084 EKEKQELQDdKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKiaveaqnKYERELMLHAA 1163
Cdd:TIGR02169 391 REKLEKLKR-EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK-------KQEWKLEQLAA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1164 DVEAlqaAKEQVSKMTSIRQHLEETTQKAESQLLECKAsweeRERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKL---SD 1240
Cdd:TIGR02169 463 DLSK---YEQELYDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGE 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1241 KVVTSMKDAVQAPL-NVSLNEEGKSQEQIleilRFIRREKEiaeTRFEVAQVESLRYRQRVELLERELQELQDSLNVER- 1318
Cdd:TIGR02169 536 RYATAIEVAAGNRLnNVVVEDDAVAKEAI----ELLKRRKA---GRATFLPLNKMRDERRDLSILSEDGVIGFAVDLVEf 608
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1319 -EKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQN--LQQMQAKVRKLELDILPLQEANAELSEKSGMLQA 1395
Cdd:TIGR02169 609 dPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKR 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1396 EKKLLEEDVKRWKARNQQLINQQKDPDTE------EYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQ 1469
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKigeiekEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1470 SLREDLSKARTEKEGIQKDLDAKIIdiQEKVKTITQVKKIGRRYKTQFEELKAQQNKAmetstqssgdHQEQHISVQEMQ 1549
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRIEARLREIEQKLNRL----------TLEKEYLEKEIQ 836
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1550 ELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTE----EQLRQQMNEKTWKTL 1625
Cdd:TIGR02169 837 ELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQlrelERKIEELEAQIEKKR 916
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1626 ALAKSKITHLSGVKDQLtKEIEELKQRN----------GALDQQKDELDVRMTALKS-------QYEGRISRLErELREH 1688
Cdd:TIGR02169 917 KRLSELKAKLEALEEEL-SEIEDPKGEDeeipeeelslEDVQAELQRVEEEIRALEPvnmlaiqEYEEVLKRLD-ELKEK 994
|
890 900
....*....|....*....|....*....
gi 568907995 1689 QERHLEQRDEPQEPTNKAPEQQRQITLKT 1717
Cdd:TIGR02169 995 RAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
739-1503 |
4.31e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 4.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 739 AIEAKAALKQLQEIFENYKKEKIDSEKLQnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQE 818
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELT-AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 819 RNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQG 898
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 899 ILERSETetkqRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLD--------VQLLDTKRQLDTEINLHLNTKELLKN 970
Cdd:TIGR02168 390 QLELQIA----SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeaelkelqAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 971 AQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDL---KSQLRQAEEQVNDLKERLKTSTSNVEQYR-AMVTSLED 1046
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLSGILGVLSELISVDEGYEaAIEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1047 SLNKEKQVTEE-VHKNIEVRLKESAEFQTQLEKKLMEvEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQR 1125
Cdd:TIGR02168 546 RLQAVVVENLNaAKKAIAFLKQNELGRVTFLPLDSIK-GTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1126 ASTALSNEQqarrdcqeqakiAVEAQNKYERELMLHAADVEAL-------QAAKEQVSKMTSIRQHLEETTQKAESQlle 1198
Cdd:TIGR02168 625 VLVVDDLDN------------ALELAKKLRPGYRIVTLDGDLVrpggvitGGSAKTNSSILERRREIEELEEKIEEL--- 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1199 ckaswEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQI-----LEILR 1273
Cdd:TIGR02168 690 -----EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKeltelEAEIE 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1274 FIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQvtaktmAQHEELMKKTETMNVVMETNKMLRE 1353
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT------LLNEEAANLRERLESLERRIAATER 838
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1354 EKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDtEEYRKLLSEK 1433
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE-SKRSELRREL 917
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1434 EIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLiqsLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTI 1503
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYSL---TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-958 |
2.07e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 86.26 E-value: 2.07e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 121 KVESEQQYFEIEKRLSQSQERLVTetRECQNLRLELEKLNNQVKVLTEKTKELETAQDRNLGIQSQFTRAKEELEAEKRD 200
Cdd:TIGR02168 208 QAEKAERYKELKAELRELELALLV--LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 201 LIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQL-------KLDELQASDVAVKYREKRLEQEKELLHNQNSWLNT 273
Cdd:TIGR02168 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAqleelesKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 274 ---ELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASM----- 345
Cdd:TIGR02168 366 eleELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleel 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 346 EEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKL------LKEAGEANKTIQDHLLQVEESKDQME------ 413
Cdd:TIGR02168 446 EEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLqarldsLERLQENLEGFSEGVKALLKNQSGLSgilgvl 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 414 KEMLEKIGKLEKELENAndllsATKRKGAILSEEELAAMSptaaAVAKIVKPGMKLTELynayvetqdqLLLEKQENKRI 493
Cdd:TIGR02168 526 SELISVDEGYEAAIEAA-----LGGRLQAVVVENLNAAKK----AIAFLKQNELGRVTF----------LPLDSIKGTEI 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 494 NKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSA------KLEQAMKEIQRLQEDTD------------------KA 549
Cdd:TIGR02168 587 QGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGgvlvvdDLDNALELAKKLRPGYRivtldgdlvrpggvitggSA 666
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 550 NKHSSVLERDNQ--RMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSY------RNIEELQ 621
Cdd:TIGR02168 667 KTNSSILERRREieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKdlarleAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 622 QQNQRLLFALRELgetreREEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTtgmaip 701
Cdd:TIGR02168 747 ERIAQLSKELTEL-----EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL------ 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 702 lqassldDISLLSTPKRSSTSQtvstpapepvidsTEAIEAKAALKQLQEIFENykkekidseklQNEQLEKLQEQVTDL 781
Cdd:TIGR02168 816 -------NEEAANLRERLESLE-------------RRIAATERRLEDLEEQIEE-----------LSEDIESLAAEIEEL 864
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 782 RSQNTKISTQLDFASKRYEMLQdnvegyrREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLkke 861
Cdd:TIGR02168 865 EELIEELESELEALLNERASLE-------EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL--- 934
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 862 kemlklsEVRLSQQRESLLAEqrgQNLLLTNLQTIQGILERSETETKQR---LNSQIEKL-------EHEISHLKKKLEN 931
Cdd:TIGR02168 935 -------EVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEARRRlkrLENKIKELgpvnlaaIEEYEELKERYDF 1004
|
890 900
....*....|....*....|....*..
gi 568907995 932 EVEQRHTLTRNLDvQLLDTKRQLDTEI 958
Cdd:TIGR02168 1005 LTAQKEDLTEAKE-TLEEAIEEIDREA 1030
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
251-1138 |
2.78e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 2.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 251 KYREKRLEQEKellhnqnswlntelktktdellalgrekgneilelkcNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEd 330
Cdd:TIGR02168 169 KYKERRKETER-------------------------------------KLERTRENLDRLEDILNELERQLKSLERQAE- 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 331 lltKLKEAKEQQASMEEKfhnelnAHIKLSNLYKSAADDSEAKSNELTRAVDELHkllkeagEANKTIQDHLLQVEESKD 410
Cdd:TIGR02168 211 ---KAERYKELKAELREL------ELALLVLRLEELREELEELQEELKEAEEELE-------ELTAELQELEEKLEELRL 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 411 QMEkEMLEKIGKLEKELENANDLLSATKRKGAILSEEElaamsptAAAVAKIVKpgmkltelYNAYVETQDQLLLEKQEN 490
Cdd:TIGR02168 275 EVS-ELEEEIEELQKELYALANEISRLEQQKQILRERL-------ANLERQLEE--------LEAQLEELESKLDELAEE 338
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 491 -KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKD 569
Cdd:TIGR02168 339 lAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 570 LSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRElgetrereEQETTSSK 649
Cdd:TIGR02168 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER--------ELAQLQAR 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 650 IAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTTGMAIPLqASSLDDI---------SLLSTPKRSS 720
Cdd:TIGR02168 491 LDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL-GGRLQAVvvenlnaakKAIAFLKQNE 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 721 TSQTvsTPAPEPVIDSTEAIEAKAALKQLQEIFENYKKEKIDS-EKLQN------------EQLEKLQEQVTDLRSQNTK 787
Cdd:TIGR02168 570 LGRV--TFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFdPKLRKalsyllggvlvvDDLDNALELAKKLRPGYRI 647
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 788 ISTQLDFASKRYEMLQdnveGYRREITSLQERNQKLTATTQKQEQiintMTQDLRGANEKLAVAEVRAENLKKEKEMLKL 867
Cdd:TIGR02168 648 VTLDGDLVRPGGVITG----GSAKTNSSILERRREIEELEEKIEE----LEEKIAELEKALAELRKELEELEEELEQLRK 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 868 SEVRLSQQRESLLAEqrgqnlLLTNLQTIQGILERSetetkQRLNSQIEKLEHEISHLKKKLENEVEQRHTltrnLDVQL 947
Cdd:TIGR02168 720 ELEELSRQISALRKD------LARLEAEVEQLEERI-----AQLSKELTELEAEIEELEERLEEAEEELAE----AEAEI 784
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 948 LDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNmeaqlasqstQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERL 1027
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAAN----------LRERLESLERRIAATERRLEDLEEQIEELSEDI 854
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1028 KTSTSNVEQYRAMVTSLEDSLN---KEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---DKRKAIESM 1101
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEallNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREklaQLELRLEGL 934
|
890 900 910
....*....|....*....|....*....|....*...
gi 568907995 1102 EQQLSELKKTLSTVQN-EVQEALQRASTALSNEQQARR 1138
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARR 972
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
152-1125 |
3.31e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 3.31e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 152 LRLELEKLNNQVKvLTEKTKELEtAQDRNLGIQSQFTRaKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNT 231
Cdd:TIGR02168 198 LERQLKSLERQAE-KAERYKELK-AELRELELALLVLR-LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 232 TKGELQLKLDELQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKgneilelkcnlENKKEEVLRLE 311
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL-----------DELAEELAELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 312 EQMNGLKTSnehlqkhVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEA 391
Cdd:TIGR02168 344 EKLEELKEE-------LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 392 GEANKTIQDHLLQVEESKdqmEKEMLEKIGKLEKELENANDLLSATKRKGAILSEEelaamsptaaavakivkpgmkLTE 471
Cdd:TIGR02168 417 ERLQQEIEELLKKLEEAE---LKELQAELEELEEELEELQEELERLEEALEELREE---------------------LEE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 472 LYNAYVETQDQLllekqenkrinkyldeivKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANK 551
Cdd:TIGR02168 473 AEQALDAAEREL------------------AQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEG 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 552 HSSVLERDnqrmeiqikdlsqqirvllmeLEEARGNHVIRDEEVssadISSSSEVISQHLVSYRNIEELQQQNQRLLFAL 631
Cdd:TIGR02168 535 YEAAIEAA---------------------LGGRLQAVVVENLNA----AKKAIAFLKQNELGRVTFLPLDSIKGTEIQGN 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 632 RELGETREREEQETTSSkiaelqhkLENSLAELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTTgmaiplqASSLDDIS 711
Cdd:TIGR02168 590 DREILKNIEGFLGVAKD--------LVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYR-------IVTLDGDL 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 712 LlstpkrssTSQTVSTPAPEPVIDSTeaIEAKAALKQLQEIFEnykkEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQ 791
Cdd:TIGR02168 655 V--------RPGGVITGGSAKTNSSI--LERRREIEELEEKIE----ELEEKIAELEKALAELRKELEELEEELEQLRKE 720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 792 LDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLsevR 871
Cdd:TIGR02168 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE---E 797
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 872 LSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETK------QRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDV 945
Cdd:TIGR02168 798 LKALREALDELRAELTLLNEEAANLRERLESLERRIAaterrlEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 946 QLldtkrqldteinlhlntkELLKNAQKDIATLKQHLNNMEAQLASqstqrtgqpgDRDDVDDLKSQLRQAEEQVNDLKE 1025
Cdd:TIGR02168 878 LL------------------NERASLEEALALLRSELEELSEELRE----------LESKRSELRRELEELREKLAQLEL 929
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1026 RLktstsnvEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEfqtQLEKKLMEVEKEKQELQDDKRKAIESMEqQL 1105
Cdd:TIGR02168 930 RL-------EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE---EARRRLKRLENKIKELGPVNLAAIEEYE-EL 998
|
970 980
....*....|....*....|
gi 568907995 1106 SELKKTLSTVQNEVQEALQR 1125
Cdd:TIGR02168 999 KERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
171-1036 |
4.85e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 4.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 171 KELETaQDRNLGIQSQFTRAKEELEAEKRDLirtnerlsqEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAsdvav 250
Cdd:TIGR02168 196 NELER-QLKSLERQAEKAERYKELKAELREL---------ELALLVLRLEELREELEELQEELKEAEEELEELTA----- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 251 kyREKRLEQEKELLHNQNSWLNTELKTKTDELLALGrekgNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVED 330
Cdd:TIGR02168 261 --ELQELEEKLEELRLEVSELEEEIEELQKELYALA----NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 331 LLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKD 410
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 411 QMEKEmLEKIGKLEKELENANdlLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQEN 490
Cdd:TIGR02168 415 RRERL-QQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 491 KRINKYLDEIVKEVEAKAPILKRQ----------------REEYERAQKAVASLSA------KLEQAMKEIQRLQEDtdK 548
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQsglsgilgvlselisvDEGYEAAIEAALGGRLqavvveNLNAAKKAIAFLKQN--E 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 549 ANKHSSVLERDNQRMEIQIKDLSQqirvlLMELEEARGnhVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLL 628
Cdd:TIGR02168 570 LGRVTFLPLDSIKGTEIQGNDREI-----LKNIEGFLG--VAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLR 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 629 FALR----------------------ELGETREREEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRD 686
Cdd:TIGR02168 643 PGYRivtldgdlvrpggvitggsaktNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE 722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 687 MYRILLSQTTGMAIPLQASSLDDISLLSTPKRSSTSQTVSTPAPEPVID--STEAIEAKAALKQLQEIFENYKKEKidse 764
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEeaEEELAEAEAEIEELEAQIEQLKEEL---- 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 765 KLQNEQLEKLQEQVTDLRsqntkisTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGA 844
Cdd:TIGR02168 799 KALREALDELRAELTLLN-------EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEEL 871
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 845 NEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQRLNSQIEKLEHEISH 924
Cdd:TIGR02168 872 ESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 925 LKKKLENEVEQRHTLTRNLDVQLLDTKRQLDT--EINLhlntkellkNAQKDIATLKQHLNNMEAQlasqstqrtgqpgd 1002
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKElgPVNL---------AAIEEYEELKERYDFLTAQ-------------- 1008
|
890 900 910
....*....|....*....|....*....|....*
gi 568907995 1003 RDDVDDLKSQLRQAEEQVND-LKERLKTSTSNVEQ 1036
Cdd:TIGR02168 1009 KEDLTEAKETLEEAIEEIDReARERFKDTFDQVNE 1043
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
741-1373 |
3.94e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.91 E-value: 3.94e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 741 EAKAALK--QLQEIFENYKKE-KIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQ 817
Cdd:COG1196 208 QAEKAERyrELKEELKELEAElLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 818 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQrgqnllltnlqtiq 897
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL-------------- 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 898 gilersetetkqrlnsqiEKLEHEISHLKKKLENEVEQRHTLTRnldvQLLDTKRQLDTEINLHLNTKELLKNAQKDIAT 977
Cdd:COG1196 354 ------------------EEAEAELAEAEEALLEAEAELAEAEE----ELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 978 LKQHLNNMEAQLASqstqrtgqpgdrddvddLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEE 1057
Cdd:COG1196 412 LLERLERLEEELEE-----------------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1058 VHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQAR 1137
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1138 RDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRqhleettqkaESQLLECKASW-EERERVLKDEVSK 1216
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA----------AVDLVASDLREaDARYYVLGDTLLG 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1217 SVSRCEDLEKQNRLLHDQIEKLsDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRY 1296
Cdd:COG1196 625 RTLVAARLEAALRRAVTLAGRL-REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1297 RQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLE 1373
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
497-1245 |
1.18e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.49 E-value: 1.18e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 497 LDEIVKEVEAKAPILKRQ----------REEYERAQKAVasLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQ 566
Cdd:TIGR02168 191 LEDILNELERQLKSLERQaekaerykelKAELRELELAL--LVLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 567 IKDLSQQIRVLLMELEEARG-----NHVIRDEEVSSADISSSSEVISQHLVSY-RNIEELQQQNQRLLFALRELGETRER 640
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKelyalANEISRLEQQKQILRERLANLERQLEELeAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 641 EEQETTS--SKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRDM-------YRILLSQTTGMAIPLQASSLDDIS 711
Cdd:TIGR02168 349 LKEELESleAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASlnneierLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 712 LLSTPKRSSTSQTVStpapepvidsteaiEAKAALKQLQEIFENYkkekidseklqNEQLEKLQEQVTDLRSQNTKISTQ 791
Cdd:TIGR02168 429 KLEEAELKELQAELE--------------ELEEELEELQEELERL-----------EEALEELREELEEAEQALDAAERE 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 792 LDFASKRYEMLQD---NVEGYRREITSLQERNQKLTATTQKQEQIINT-------MTQDLRGANEKLAV----AEVRAEN 857
Cdd:TIGR02168 484 LAQLQARLDSLERlqeNLEGFSEGVKALLKNQSGLSGILGVLSELISVdegyeaaIEAALGGRLQAVVVenlnAAKKAIA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 858 LKKEKEMLKLSEVRLSQQRESLLAEQRGQnlLLTNLQTIQGILERSETETKQRLNSQIEKLEHeiSHLKKKLENEVEQRH 937
Cdd:TIGR02168 564 FLKQNELGRVTFLPLDSIKGTEIQGNDRE--ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGG--VLVVDDLDNALELAK 639
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 938 TLTRN-----LDVQLLDTK----RQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTgqpGDRDDVDD 1008
Cdd:TIGR02168 640 KLRPGyrivtLDGDLVRPGgvitGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELE---ELEEELEQ 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1009 LKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEvrlkesaefqtQLEKKLMEVEKEKQ 1088
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE-----------EAEEELAEAEAEIE 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1089 ELQDDkrkaIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERelmlhaadveal 1168
Cdd:TIGR02168 786 ELEAQ----IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE------------ 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1169 qaAKEQVSKMTSIRQHLEETTQKAESQL---LECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTS 1245
Cdd:TIGR02168 850 --LSEDIESLAAEIEELEELIEELESELealLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
733-1696 |
1.41e-14 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 80.48 E-value: 1.41e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 733 VIDSTEAIEAKAALKQLQEIFenykKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLdfaskryEMLQDNVEGYRRE 812
Cdd:TIGR00606 178 IFSATRYIKALETLRQVRQTQ----GQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQL-------ESSREIVKSYENE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 813 ITSLQERNQKLTATTQKQEQIINTMTQdlrganekLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLL-- 890
Cdd:TIGR00606 247 LDPLKNRLKEIEHNLSKIMKLDNEIKA--------LKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREke 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 891 TNLQTIQGILERSETEtKQRLNSQIEKLEHEISHLKkkLENEVEQRHTLTRNLDVQLLDTKRQLDTeinlhLNTKELLKN 970
Cdd:TIGR00606 319 RELVDCQRELEKLNKE-RRLLNQEKTELLVEQGRLQ--LQADRHQEHIRARDSLIQSLATRLELDG-----FERGPFSER 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 971 AQKDIATLKQHLNNMEAQLASQstqrtgqpgdrdDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMvtsLEDSLNK 1050
Cdd:TIGR00606 391 QIKNFHTLVIERQEDEAKTAAQ------------LCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEI---LEKKQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1051 EKQVTEEVhKNIEVRLKESAEFQTQLEKKLMEVEK-EKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEaLQRASTA 1129
Cdd:TIGR00606 456 LKFVIKEL-QQLEGSSDRILELDQELRKAERELSKaEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ-LNHHTTT 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1130 LSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADV-------EALQAAKEQVSKMTSIRQHLEETTQKAES---QLLEC 1199
Cdd:TIGR00606 534 RTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkkqleDWLHSKSKEINQTRDRLAKLNKELASLEQnknHINNE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1200 KASWEERERVLKDEVSKSVSrCEDLEKQNRLLHDQIEKLS-DKVVTSMKDAVQAPLNVSLNEEGKSQEQILEilRFIRRE 1278
Cdd:TIGR00606 614 LESKEEQLSSYEDKLFDVCG-SQDEESDLERLKEEIEKSSkQRAMLAGATAVYSQFITQLTDENQSCCPVCQ--RVFQTE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1279 KEIAETrfevaqVESLRYRQRVELLERELQELQDSlNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERL 1358
Cdd:TIGR00606 691 AELQEF------ISDLQSKLRLAPDKLKSTESELK-KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRL 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1359 EQNLQQMQakvrKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWK-----------ARNQQLINQQKDPDTEEYR 1427
Cdd:TIGR00606 764 KNDIEEQE----TLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAqqaaklqgsdlDRTVQQVNQEKQEKQHELD 839
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1428 KLLSEKEIHTKRIQQLNEEVGRLKAEIarsnasltnnqNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVK 1507
Cdd:TIGR00606 840 TVVSKIELNRKLIQDQQEQIQHLKSKT-----------NELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAK 908
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1508 KIGRRYKTQFEELKAQQNKAMetstqsSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQV-ENLQKTLSEKETEARSL 1586
Cdd:TIGR00606 909 EQDSPLETFLEKDQQEKEELI------SSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIqDGKDDYLKQKETELNTV 982
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1587 QEQTVQLQSELSRLRQDLQ--DKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELK--QRNGALDQQKDE 1662
Cdd:TIGR00606 983 NAQLEECEKHQEKINEDMRlmRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQvlQMKQEHQKLEEN 1062
|
970 980 990 1000
....*....|....*....|....*....|....*....|
gi 568907995 1663 LD------VRMTALKSQYEGRISRLERELREHQERHLEQR 1696
Cdd:TIGR00606 1063 IDlikrnhVLALGRQKGYEKEIKHFKKELREPQFRDAEEK 1102
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
93-635 |
4.04e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.83 E-value: 4.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 93 KSTQNKLEKFLAEQQSEIDCLKGRHEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKE 172
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 173 LETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKY 252
Cdd:COG1196 325 LAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 253 REKRLEQEKELLhnqnswlnTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLL 332
Cdd:COG1196 405 LEEAEEALLERL--------ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 333 TKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSA-ADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDq 411
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVkAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED- 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 412 mEKEMLEKIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQEN- 490
Cdd:COG1196 556 -DEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEa 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 491 -KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKD 569
Cdd:COG1196 635 aLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 570 LSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRELG 635
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
740-1575 |
4.20e-14 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 79.03 E-value: 4.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 740 IEAKAALKQLQEIFENYKKEKIDSEKlQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQER 819
Cdd:PTZ00121 1060 AEAKAHVGQDEGLKPSYKDFDFDAKE-DNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAED 1138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 820 NQKLTATTQKQEQ---IINTMTQDLRGANEKLAVAEVR-AENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLllTNLQT 895
Cdd:PTZ00121 1139 ARKAEEARKAEDAkrvEIARKAEDARKAEEARKAEDAKkAEAARKAEEVRKAEELRKAEDARKAEAARKAEEE--RKAEE 1216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 896 IQGILERSETETKQRLnSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVqlldTKRQLDTEINLHLNTKELLKNAQKDI 975
Cdd:PTZ00121 1217 ARKAEDAKKAEAVKKA-EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF----ARRQAAIKAEEARKADELKKAEEKKK 1291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 976 AtlkQHLNNMEAQLASQSTQRTGQpgDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVT 1055
Cdd:PTZ00121 1292 A---DEAKKAEEKKKADEAKKKAE--EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1056 EEVHKNIEVRLKESAEFQTQLEKKlMEVEKEKQELQDDKRKAIE-----SMEQQLSELKKTLSTVQnEVQEALQRASTAL 1130
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEK-KKADEAKKKAEEDKKKADElkkaaAAKKKADEAKKKAEEKK-KADEAKKKAEEAK 1444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1131 SNEQQARRdcQEQAKIAVEAQNKYERelmlhAADVEALQAAKEQVSKMTSIRQHLEETTQKAES--QLLECKASWEERER 1208
Cdd:PTZ00121 1445 KADEAKKK--AEEAKKAEEAKKKAEE-----AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEakKAAEAKKKADEAKK 1517
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1209 VLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSmKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEV 1288
Cdd:PTZ00121 1518 AEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEE 1596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1289 AQV---ESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQM 1365
Cdd:PTZ00121 1597 VMKlyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKK 1676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1366 QAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEED------VKRWKARNQQLINQQKDPDTEEYRKL--LSEKEIHT 1437
Cdd:PTZ00121 1677 AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkaeeLKKAEEENKIKAEEAKKEAEEDKKKAeeAKKDEEEK 1756
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1438 KRIQQLNEEVGRLKAEIARSNASLtnnqnliqsLREDLSKartEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQF 1517
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAV---------IEEELDE---EDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDS 1824
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1518 EELKAQQNKAMETSTQS---SGDHQEQHISVQEMQELKDTLSQSE--TKTKSLEGQVENLQKT 1575
Cdd:PTZ00121 1825 KEMEDSAIKEVADSKNMqleEADAFEKHKFNKNNENGEDGNKEADfnKEKDLKEDDEEEIEEA 1887
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1003-1687 |
2.29e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 2.29e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1003 RDDVDDLKSQL----RQAE--EQVNDLKERLKtstsnveQYRAMVTSLEDSLNKEKQvtEEVHKNIEVRLKESAEFQTQL 1076
Cdd:COG1196 192 EDILGELERQLepleRQAEkaERYRELKEELK-------ELEAELLLLKLRELEAEL--EELEAELEELEAELEELEAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1077 EKKLMEVEKEKQELQDDkRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYER 1156
Cdd:COG1196 263 AELEAELEELRLELEEL-ELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1157 ELmlhaadvEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSksvsrcEDLEKQNRLLHDQIE 1236
Cdd:COG1196 342 LE-------EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR------AAAELAAQLEELEEA 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1237 KLSdkvvtsmkdavqaplnvsLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNV 1316
Cdd:COG1196 409 EEA------------------LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1317 EREKVQvtaktmAQHEELMKKtetmnvvmetnkmlREEKERLEQNLQQMQAKVRKLELDILPLQ--EANAELSEKSGMLQ 1394
Cdd:COG1196 471 EAALLE------AALAELLEE--------------LAEAAARLLLLLEAEADYEGFLEGVKAALllAGLRGLAGAVAVLI 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1395 AEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLRED 1474
Cdd:COG1196 531 GVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1475 LSKARTEkegIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDT 1554
Cdd:COG1196 611 ADARYYV---LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1555 LSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDkttEEQLRQQMNEKTWKTLALAKSKITH 1634
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE---ELLEEEELLEEEALEELPEPPDLEE 764
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1635 LSGVKDQLTKEI--------------EELKQRNGALDQQKDELDVRMTALksqyEGRISRLERELRE 1687
Cdd:COG1196 765 LERELERLEREIealgpvnllaieeyEELEERYDFLSEQREDLEEARETL----EEAIEEIDRETRE 827
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
511-1454 |
1.58e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 1.58e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 511 LKRQREEYER----AQKAVASLSAKLEQAMKEIQRLQEDTDKANKHssvlerdnQRMEIQIKDLsqQIRVLLMELEEARG 586
Cdd:TIGR02168 170 YKERRKETERklerTRENLDRLEDILNELERQLKSLERQAEKAERY--------KELKAELREL--ELALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 587 NhvirdeevSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRELgetrereeqettSSKIAELQHKLENSLAELEQ 666
Cdd:TIGR02168 240 E--------LEELQEELKEAEEELEELTAELQELEEKLEELRLEVSEL------------EEEIEELQKELYALANEISR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 667 LRESRQHQMQLVDSIVRQRDMYRILLSQttgmaipLQASSLDDISLLSTPKRSSTSQTVstpapepvidstEAIEAKAAL 746
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEE-------LESKLDELAEELAELEEKLEELKE------------ELESLEAEL 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 747 KQLQEIFENYKKEKIDSEklqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKltAT 826
Cdd:TIGR02168 361 EELEAELEELESRLEELE----EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AE 434
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 827 TQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILerSETE 906
Cdd:TIGR02168 435 LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGV--KALL 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 907 TKQRLNSQIEKLEHEISHLKKKLENEVEQ------RHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQ 980
Cdd:TIGR02168 513 KNQSGLSGILGVLSELISVDEGYEAAIEAalggrlQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDRE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 981 HLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQ------LRQAEEQVNDLKERLKTSTSNVEQYRA--MVTSLEDSLNKEK 1052
Cdd:TIGR02168 593 ILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPggVITGGSAKTNSSI 672
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1053 QVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD---DKRKAIESMEQQLSELKKTLSTVQNEVQEALQRasta 1129
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEeleQLRKELEELSRQISALRKDLARLEAEVEQLEER---- 748
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1130 lsNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEaLQAAKEQVSKMTSIRQHLEETTQKAESQLLECKasweERERV 1209
Cdd:TIGR02168 749 --IAQLSKELTELEAEIEELEERLEEAEEELAEAEAE-IEELEAQIEQLKEELKALREALDELRAELTLLN----EEAAN 821
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1210 LKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVvtsmkdavqAPLNVSLNEEGKSQEQIleilrfirrEKEIAETRFEVA 1289
Cdd:TIGR02168 822 LRERLESLERRIAATERRLEDLEEQIEELSEDI---------ESLAAEIEELEELIEEL---------ESELEALLNERA 883
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1290 QVESLRYRQRvelleRELQELQDSLNVEREKVQvtaKTMAQHEELMKKTETMNvvmetnkmlrEEKERLEQNLQQMQAKV 1369
Cdd:TIGR02168 884 SLEEALALLR-----SELEELSEELRELESKRS---ELRRELEELREKLAQLE----------LRLEGLEVRIDNLQERL 945
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1370 R---KLELDILPLQEANAELSEKSgmLQAEKKLLEEDVKRWKARNQQLINQQKDpDTEEYRKLLSEKEIHTKRIQQLNEE 1446
Cdd:TIGR02168 946 SeeySLTLEEAEALENKIEDDEEE--ARRRLKRLENKIKELGPVNLAAIEEYEE-LKERYDFLTAQKEDLTEAKETLEEA 1022
|
....*...
gi 568907995 1447 VGRLKAEI 1454
Cdd:TIGR02168 1023 IEEIDREA 1030
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
754-1242 |
2.18e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 72.75 E-value: 2.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 754 ENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQI 833
Cdd:TIGR04523 60 DKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKN 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 834 INTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETKQrLNS 913
Cdd:TIGR04523 140 IDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKS-LES 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 914 QIEKLEHEishlKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQS 993
Cdd:TIGR04523 219 QISELKKQ----NNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 994 TQrtgqpgdrddVDDLKSQlrQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQ 1073
Cdd:TIGR04523 295 SE----------ISDLNNQ--KEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1074 TQLEKKLMEVEKEKQElQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDcQEQAKIAVEAQNK 1153
Cdd:TIGR04523 363 RELEEKQNEIEKLKKE-NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE-IERLKETIIKNNS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1154 YERELmlhaadVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKD---EVSKSVSRCEDLEKQNRL 1230
Cdd:TIGR04523 441 EIKDL------TNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSkekELKKLNEEKKELEEKVKD 514
|
490
....*....|..
gi 568907995 1231 LHDQIEKLSDKV 1242
Cdd:TIGR04523 515 LTKKISSLKEKI 526
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
93-581 |
3.45e-12 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 71.98 E-value: 3.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 93 KSTQNKLEKFLAEQQSEIDCLKGRHEKFK------VESEQQYFEIEKRLSQSQERLVTETrecQNLRLELEKLNNQVKVL 166
Cdd:TIGR04523 172 ENELNLLEKEKLNIQKNIDKIKNKLLKLElllsnlKKKIQKNKSLESQISELKKQNNQLK---DNIEKKQQEINEKTTEI 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 167 TEKTKELETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQ---EVEYLTED-----VKRLNEKLKESNTTKGELQL 238
Cdd:TIGR04523 249 SNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQlksEISDLNNQkeqdwNKELKSELKNQEKKLEEIQN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 239 KLDELQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKG----------NEILELKCNLENKKEEVL 308
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQsykqeiknleSQINDLESKIQNQEKLNQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 309 RLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH------NELNAHIK--------LSNLYKSAADDSEAKS 374
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSvkeliiKNLDNTREsletqlkvLSRSINKIKQNLEQKQ 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 375 NELTRAVDELHKLLKEAGEANKTIQDHLLQVEESK---DQMEKEMLEK---IGKLEKELENANDLLSATKRKGAILSEEE 448
Cdd:TIGR04523 489 KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKekiEKLESEKKEKeskISDLEDELNKDDFELKKENLEKEIDEKNK 568
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 449 laamsptaaavaKIVKPGMKLTELYNAYVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 528
Cdd:TIGR04523 569 ------------EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNI 636
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 568907995 529 SAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMEL 581
Cdd:TIGR04523 637 KSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDDIIELMKDWLKEL 689
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
100-686 |
2.52e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.32 E-value: 2.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 100 EKFLAEQQSEIDCLKGRHEKFKVESEqqyfEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELEtaqdr 179
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTE----NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELE----- 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 180 nlgiqsqftRAKEELEAEKRdlirtnerlsqEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQasdvavkyrekrlEQ 259
Cdd:PRK03918 235 ---------ELKEEIEELEK-----------ELESLEGSKRKLEEKIRELEERIEELKKEIEELE-------------EK 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 260 EKELlhnqnswlnTELKTKTDELLALGREKgNEILELKCNLENKKEevlRLEEQMNGLktsnEHLQKHVEDLLTKLKEAK 339
Cdd:PRK03918 282 VKEL---------KELKEKAEEYIKLSEFY-EEYLDELREIEKRLS---RLEEEINGI----EERIKELEEKEERLEELK 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 340 EQQASMEEKFhNELNAHIKLSNLYKSAADDSEAKSNELT-RAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEmle 418
Cdd:PRK03918 345 KKLKELEKRL-EELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE--- 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 419 kigklEKELENANDLLSATKRK----GAILSEE-ELAAMSPTAAAVAKIVKPGMKLTELYNAY--VETQDQLLLEKQENK 491
Cdd:PRK03918 421 -----IKELKKAIEELKKAKGKcpvcGRELTEEhRKELLEEYTAELKRIEKELKEIEEKERKLrkELRELEKVLKKESEL 495
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 492 RINKYLDEIVKEVEAK-----APILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEdtdkANKHSSVLERDNQRMEIQ 566
Cdd:PRK03918 496 IKLKELAEQLKELEEKlkkynLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEE 571
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 567 IKDLSQQIRVL-----------LMELEEARGNHV-IRDEEVSSADISSSSEVISQHLV-SYRNIEELQQQNQRLLFALRE 633
Cdd:PRK03918 572 LAELLKELEELgfesveeleerLKELEPFYNEYLeLKDAEKELEREEKELKKLEEELDkAFEELAETEKRLEELRKELEE 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 568907995 634 LGETREREEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRD 686
Cdd:PRK03918 652 LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
132-710 |
4.65e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 4.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 132 EKRLSQSQERLvteTReCQNLRLELEK----LNNQVKVlTEKTKELEtAQDRNLGIQSQFtRAKEELEAEKRDLIRTNER 207
Cdd:COG1196 178 ERKLEATEENL---ER-LEDILGELERqlepLERQAEK-AERYRELK-EELKELEAELLL-LKLRELEAELEELEAELEE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 208 LSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGR 287
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 288 EkgneilelkcnLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAA 367
Cdd:COG1196 331 E-----------LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 368 DDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQmEKEMLEKIGKLEKELENANDLLSATKRKGAILSEE 447
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAA 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 448 ELAAMSP--TAAAVAKIVKPGMKLTELYNAYVetqdQLLLEKQENKRINKYLDEI---VKEVEAKAP------ILKRQRE 516
Cdd:COG1196 479 LAELLEElaEAAARLLLLLEAEADYEGFLEGV----KAALLLAGLRGLAGAVAVLigvEAAYEAALEaalaaaLQNIVVE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 517 EYERAQKAVASLSAKLE--------QAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEAR--- 585
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAgratflplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARlea 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 586 GNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRELGETREREEQETTSSKIAELQHKLENSLAELE 665
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEE 714
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 568907995 666 QLRESRQHQMQLVDSIVRQRDMYRILLSQTTGMAIPLQASSLDDI 710
Cdd:COG1196 715 ERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1425-1727 |
4.89e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 4.89e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1425 EYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASltnnqnlIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTIT 1504
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1505 QVKKIGRRYKTQFEELKAQQNKAMEtstQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEAR 1584
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEE---ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1585 SLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELD 1664
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1665 VRMTALKSQYEGRISRLERELREHQErhLEQRDEPQEPTNKAPEQQRQITLKTTPASGERGIA 1727
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAE--AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1351-1620 |
1.50e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.50e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1351 LREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSgmLQAEKKLLEEDVKRWKARNQQLiNQQKDPDTEEYRKLL 1430
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAEEELEE--LTAELQELEEKLEELRLEVSEL-EEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1431 SEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIG 1510
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1511 RRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQ--SETKTKSLEGQVENLQKTLSEKETEARSLQE 1588
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQeiEELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260 270
....*....|....*....|....*....|...
gi 568907995 1589 QTVQLQSELSRLRQDLQDKTTEEQ-LRQQMNEK 1620
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDaAERELAQL 487
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1258-1574 |
1.55e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.00 E-value: 1.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1258 LNEEGKSQEQILEILRFIRREKEIAETRFEVAQVEslryRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKK 1337
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREELEELQEELKEAE----EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1338 TETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQ 1417
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1418 QKDPDtEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKArtEKEGIQKDLDAKIidiQ 1497
Cdd:TIGR02168 374 LEELE-EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELE---E 447
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1498 EKVKTITQVKKIGRRYKTQFEELKAQQnkametstqssgdhqeqhisvQEMQELKDTLSQSETKTKSLEGQVENLQK 1574
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAE---------------------QALDAAERELAQLQARLDSLERLQENLEG 503
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
963-1580 |
2.79e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.86 E-value: 2.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 963 NTKELLKNAQKDIATLKQHLNNmeaqlasqstqrtgqpgdrddvddLKSQLRQAEEQVNDLKERLKTstsnVEQYRAMVT 1042
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINE------------------------ISSELPELREELEKLEKEVKE----LEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1043 SLE---DSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVE--KEKQELQDDKRKAIESMEQQLSELKKTLSTVQN 1117
Cdd:PRK03918 242 ELEkelESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1118 EVQEALQRASTALSNEQQARRDCQEQAKIaveaqnkyERELMLHAADVEALQAAKEQVSKMTSIRQHLE-ETTQKAESQL 1196
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEELKKKLKEL--------EKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPEKLEKEL 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1197 LECKASWEErervLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSdkvvtsmKDAVQAPL-NVSLNEEGKsqeqiLEILRFI 1275
Cdd:PRK03918 394 EELEKAKEE----IEEEISKITARIGELKKEIKELKKAIEELK-------KAKGKCPVcGRELTEEHR-----KELLEEY 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1276 RRE-KEIAETRFEVAQVESlryrqrvellerelqelqdslNVEREKVQVtaktmaqhEELMKKTETMNVVMETNKMLREE 1354
Cdd:PRK03918 458 TAElKRIEKELKEIEEKER---------------------KLRKELREL--------EKVLKKESELIKLKELAEQLKEL 508
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1355 KERLEQ-NLQQMQAKVRKLEldilplqeanaELSEKSGMLQAEKKLLEEDVKRWKARNQQL--INQQKDPDTEEYRKLLS 1431
Cdd:PRK03918 509 EEKLKKyNLEELEKKAEEYE-----------KLKEKLIKLKGEIKSLKKELEKLEELKKKLaeLEKKLDELEEELAELLK 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1432 E-KEIHTKRIQQLNEEVGRLKaEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKig 1510
Cdd:PRK03918 578 ElEELGFESVEELEERLKELE-PFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK-- 654
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1511 rryKTQFEELKAQQNKAMETSTQSSGdhqeqhiSVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKE 1580
Cdd:PRK03918 655 ---KYSEEEYEELREEYLELSRELAG-------LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
692-1589 |
3.41e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 65.91 E-value: 3.41e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 692 LSQTTGMAIPLQASSLDDISLLSTPKRSSTSQTVSTPAPEPVIDSTEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQL 771
Cdd:pfam15921 19 ITSNRGSSSPFFVSSIRGTIIENTSSTGTFTQIPIFPKYEVELDSPRKIIAYPGKEHIERVLEEYSHQVKDLQRRLNESN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 772 EKLQEQVTDLRSQNTKISTQLdfasKRYEMLQDNVEGYRREitslqernqkltaTTQKQEQIINTMTQdlrganeklAVA 851
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKL----QEMQMERDAMADIRRR-------------ESQSQEDLRNQLQN---------TVH 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 852 EVRAENLKKEkEMLKLSEVRLSQQRESLLAEQrgqnlllTNLQTIQGILERSETETKQRLNSQIEKLEHEISHLKKKLEN 931
Cdd:pfam15921 153 ELEAAKCLKE-DMLEDSNTQIEQLRKMMLSHE-------GVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISK 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 932 EVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLknaqkdiatLKQHLNNMEAQLASQSTQRTG----QPGDRDDVD 1007
Cdd:pfam15921 225 ILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELL---------LQQHQDRIEQLISEHEVEITGltekASSARSQAN 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1008 DLKSQLRQAEEQVNDLKERLKTSTSNVEqyrAMVTSLEDSLNKEKQVTEEVHKNIEVRL------------------KES 1069
Cdd:pfam15921 296 SIQSQLEIIQEQARNQNSMYMRQLSDLE---STVSQLRSELREAKRMYEDKIEELEKQLvlanseltearterdqfsQES 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1070 AEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQ------LSELKKTLSTVQNEVQ--EALQRAstalsneqqARRDCQ 1141
Cdd:pfam15921 373 GNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQrlEALLKA---------MKSECQ 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1142 EQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLK---DEVSKSV 1218
Cdd:pfam15921 444 GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEatnAEITKLR 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1219 SRCeDLEKQnRLLHDQIEKLSDKVVTSMKDAVQAPLnvslneegKSQEQILEILRfirrekeiaetrfevAQVESLryrq 1298
Cdd:pfam15921 524 SRV-DLKLQ-ELQHLKNEGDHLRNVQTECEALKLQM--------AEKDKVIEILR---------------QQIENM---- 574
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1299 rvellerelqelqdsLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKerlEQNLQQMQAKVRKLELDILP 1378
Cdd:pfam15921 575 ---------------TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK---DAKIRELEARVSDLELEKVK 636
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1379 LQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLinqqkdpdTEEYRKLlseKEIHTKRIQQLNEEVGRLKAEIARSN 1458
Cdd:pfam15921 637 LVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSL--------SEDYEVL---KRNFRNKSEEMETTTNKLKMQLKSAQ 705
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1459 ASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAK---IIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMET-STQS 1534
Cdd:pfam15921 706 SELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKrgqIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTvATEK 785
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1535 SGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQ 1589
Cdd:pfam15921 786 NKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRLKLQ 840
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
986-1620 |
7.45e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.78 E-value: 7.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 986 EAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQV--TEEVHKNIE 1063
Cdd:PTZ00121 1119 EAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVrkAEELRKAED 1198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1064 VRLKESAEfQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQ 1143
Cdd:PTZ00121 1199 ARKAEAAR-KAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEA 1277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1144 AKI-----AVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAEsqllECKASWEERER---VLKDEVS 1215
Cdd:PTZ00121 1278 RKAdelkkAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD----AAKKKAEEAKKaaeAAKAEAE 1353
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1216 KSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQA----PLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQV 1291
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKA 1433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1292 ESLRYRQRVELLERELQELQDSLNvEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRK 1371
Cdd:PTZ00121 1434 DEAKKKAEEAKKADEAKKKAEEAK-KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1372 LELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRwkarNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLK 1451
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK----ADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK 1588
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1452 AEIARSNASLTNNQNLIQSLREDLSKARTEK---------EGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELK- 1521
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKikaeelkkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAk 1668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1522 --AQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSR 1599
Cdd:PTZ00121 1669 kaEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
650 660
....*....|....*....|.
gi 568907995 1600 LRQDLQDKTTEEQLRQQMNEK 1620
Cdd:PTZ00121 1749 AKKDEEEKKKIAHLKKEEEKK 1769
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-552 |
9.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 9.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 150 QNLRLELEKLNNQVKVLTEKTKELETAQDRnlgIQSQFTRAKEELEAEKRDLIRTN----------ERLSQEVEYLTEDV 219
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQLRKELEELSrqisalrkdlARLEAEVEQLEERI 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 220 KRLNEKLKESNTTKGELQLKLDELQAsdvavkyREKRLEQEKELlhnqnswLNTELKTKTDELLALGRekgnEILELKCN 299
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEE-------ELAEAEAEIEE-------LEAQIEQLKEELKALRE----ALDELRAE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 300 LENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFhnelnahiklsnlyksaaDDSEAKSNELTR 379
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEI------------------EELEELIEELES 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 380 AVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEMLEkigkLEKELENANDLLSATKRKGAILsEEELAAMSPTAAAV 459
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESKRSE----LRRELEELREKLAQLELRLEGL-EVRIDNLQERLSEE 948
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 460 AKIVKPGMKltELYNAYVETQDQLlleKQENKRINKYLDEI----------VKEVEAKAPILKRQREEYERAQKavasls 529
Cdd:TIGR02168 949 YSLTLEEAE--ALENKIEDDEEEA---RRRLKRLENKIKELgpvnlaaieeYEELKERYDFLTAQKEDLTEAKE------ 1017
|
410 420
....*....|....*....|....*...
gi 568907995 530 aKLEQAMKEI-----QRLQEDTDKANKH 552
Cdd:TIGR02168 1018 -TLEEAIEEIdrearERFKDTFDQVNEN 1044
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
99-586 |
9.85e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 64.31 E-value: 9.85e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 99 LEKFLAEQQSEIDCLKGRHEKFKV--ESEQQYFEIEKRLSQSQERLvtetrecQNLRLELEKLNNQVKVLTEKTKELETA 176
Cdd:PRK03918 264 LEERIEELKKEIEELEEKVKELKElkEKAEEYIKLSEFYEEYLDEL-------REIEKRLSRLEEEINGIEERIKELEEK 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 177 QDRnlgiqsqftraKEELEAEKRDLIRTNERLSQEVEyLTEDVKRLNEKL-----KESNTTKGELQLKLDELQASDVAVK 251
Cdd:PRK03918 337 EER-----------LEELKKKLKELEKRLEELEERHE-LYEEAKAKKEELerlkkRLTGLTPEKLEKELEELEKAKEEIE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 252 YREKRLEQEKELLHNQNSWLNT---ELKTKTDELLALGRE-----KGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEH 323
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKaieELKKAKGKCPVCGRElteehRKELLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 324 LQKHV--EDLLTKLKEAKEQQASMEEKfhnelnahiklsnLYKSAADDSEAKSNELTRAVDELHKLLKEAgeanKTIQDH 401
Cdd:PRK03918 485 LEKVLkkESELIKLKELAEQLKELEEK-------------LKKYNLEELEKKAEEYEKLKEKLIKLKGEI----KSLKKE 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 402 LLQVEESKDQMEkEMLEKIGKLEKELENANDLLSATKRKGAILSEEELAamsptaaavakivkpgmKLTELYNAYVE--- 478
Cdd:PRK03918 548 LEKLEELKKKLA-ELEKKLDELEEELAELLKELEELGFESVEELEERLK-----------------ELEPFYNEYLElkd 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 479 -------TQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQR-----EEYERAQKAVASLSAKLEQAMKEIQRLQEDT 546
Cdd:PRK03918 610 aekelerEEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 568907995 547 DKANKHSSVLERDNQRMEIQIKDLsQQIRVLLMELEEARG 586
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREKAKKEL-EKLEKALERVEELRE 728
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
128-1194 |
1.12e-09 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 64.30 E-value: 1.12e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 128 YFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETA----QDRNLGIQSQFTRAKEELE--AEKRDL 201
Cdd:TIGR01612 539 YKEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLFDKyleiDDEIIYINKLKLELKEKIKniSDKNEY 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 202 IRTNERLSQEVE----YLTEDVK----RLNEKLKESNTTKGELQLKLDELQASDVAVKYRE-KRLEQEKELLHNQNSWLN 272
Cdd:TIGR01612 619 IKKAIDLKKIIEnnnaYIDELAKispyQVPEHLKNKDKIYSTIKSELSKIYEDDIDALYNElSSIVKENAIDNTEDKAKL 698
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 273 TELKTKTDELLALGREKGNEILELK-CNLENKKEEVLRLEEQMNGLKTS--NEHLQKHVEDLLTKLKE--------AKEQ 341
Cdd:TIGR01612 699 DDLKSKIDKEYDKIQNMETATVELHlSNIENKKNELLDIIVEIKKHIHGeiNKDLNKILEDFKNKEKElsnkindyAKEK 778
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 342 Q-----ASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAV----DELHKLLKEAgeanKTIQDHLL--------- 403
Cdd:TIGR01612 779 DelnkyKSKISEIKNHYNDQINIDNIKDEDAKQNYDKSKEYIKTIsikeDEIFKIINEM----KFMKDDFLnkvdkfinf 854
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 404 --QVEESKDQMEKEMLEKIGKLEKEL--ENANDLLSATKRKGAILSE-----EELAAMSPTAAAVAKIVKPGMKLTELYN 474
Cdd:TIGR01612 855 enNCKEKIDSEHEQFAELTNKIKAEIsdDKLNDYEKKFNDSKSLINEinksiEEEYQNINTLKKVDEYIKICENTKESIE 934
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 475 AYVETQDQLLLEKQENKRINKYLDEIVKEVEAK-APILKRQREEYERAQK--AVASLSAKLEQAMKEIQRLQEDTDKaNK 551
Cdd:TIGR01612 935 KFHNKQNILKEILNKNIDTIKESNLIEKSYKDKfDNTLIDKINELDKAFKdaSLNDYEAKNNELIKYFNDLKANLGK-NK 1013
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 552 HSSVL------ERDNQRMEIQIKDLSQQIRVLLMELEEARGNhvIRDE---EVSSADISSSSEVISQHLVSYRNIEELQQ 622
Cdd:TIGR01612 1014 ENMLYhqfdekEKATNDIEQKIEDANKNIPNIEIAIHTSIYN--IIDEiekEIGKNIELLNKEILEEAEINITNFNEIKE 1091
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 623 QNQRLLFA-LRELGETREREEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQlvdsivrqrdmyrillsqttgmAIP 701
Cdd:TIGR01612 1092 KLKHYNFDdFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYID----------------------EIK 1149
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 702 LQASSLDDIsllstpkrssTSQTVSTPAPEPVIDSTEAIEAKAALKqlQEIFENYKKEKIDSEKLQNEQ--LEKLQE-QV 778
Cdd:TIGR01612 1150 AQINDLEDV----------ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNEIAEIEKDKtsLEEVKGiNL 1217
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 779 TDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQK------LTATTQKQEQIINTMTQDLR-----GANEK 847
Cdd:TIGR01612 1218 SYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKSPEienemgIEMDIKAEMETFNISHDDDKdhhiiSKKHD 1297
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 848 LAVAEVRAENLKKEK---EMLKLSEVRLSQQRESLLAEQRGQ--NLLLTNLQTIQGILERSETetkQRLNSQIEKLEHEI 922
Cdd:TIGR01612 1298 ENISDIREKSLKIIEdfsEESDINDIKKELQKNLLDAQKHNSdiNLYLNEIANIYNILKLNKI---KKIIDEVKEYTKEI 1374
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 923 SHLKKKLENEVEQRHTLTRNL--DVQLLDTKRQLD---------------TEINLHL-----NTKELLKNAQKDIATLKQ 980
Cdd:TIGR01612 1375 EENNKNIKDELDKSEKLIKKIkdDINLEECKSKIEstlddkdidecikkiKELKNHIlseesNIDTYFKNADENNENVLL 1454
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 981 HLNNME-AQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVE-------QYRAMVTSLedsLNKEK 1052
Cdd:TIGR01612 1455 LFKNIEmADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEknkelfeQYKKDVTEL---LNKYS 1531
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1053 QVT-----EEVHKNIEVRLKESAEFQTQL-------EKKLMEVEKEKQELQDDKRKAIESmeqqlselKKTLSTVQNEVq 1120
Cdd:TIGR01612 1532 ALAiknkfAKTKKDSEIIIKEIKDAHKKFileaeksEQKIKEIKKEKFRIEDDAAKNDKS--------NKAAIDIQLSL- 1602
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1121 EALQRASTALSNEQQARRDCQEQA-----KIAVEAQNKYERELMLHAADVEALQ----AAKEQVSKMTSIRQHLEETTQK 1191
Cdd:TIGR01612 1603 ENFENKFLKISDIKKKINDCLKETesiekKISSFSIDSQDTELKENGDNLNSLQefleSLKDQKKNIEDKKKELDELDSE 1682
|
...
gi 568907995 1192 AES 1194
Cdd:TIGR01612 1683 IEK 1685
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1006-1698 |
1.87e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1006 VDDLKSQLRQAE---EQVNDLKERLKTSTsnVEQYRAMVTSLEdSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLME 1082
Cdd:TIGR02168 202 LKSLERQAEKAErykELKAELRELELALL--VLRLEELREELE-ELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1083 VEKEKQELQ---DDKRKAIESMEQQLSELKKTLSTVQNEvqeaLQRASTALSNEQQARrdcQEQAKIAVEAQNKYERELM 1159
Cdd:TIGR02168 279 LEEEIEELQkelYALANEISRLEQQKQILRERLANLERQ----LEELEAQLEELESKL---DELAEELAELEEKLEELKE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1160 LHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLleckASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKLS 1239
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKV----AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1240 DKVVTSMKDAVQAplnvSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNvERE 1319
Cdd:TIGR02168 428 KKLEEAELKELQA----ELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE-NLE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1320 KVQVTAKTMAQHEELM--------------KKTET----------MNVVMETNKMLREEKERLEQNLQqmqAKVRKLELD 1375
Cdd:TIGR02168 503 GFSEGVKALLKNQSGLsgilgvlselisvdEGYEAaieaalggrlQAVVVENLNAAKKAIAFLKQNEL---GRVTFLPLD 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1376 ILPLQEANAE----LSEKSGMLQAEKKLLEEDVKRWKARN----QQLINQQKDPDTEEYRKLLSEKEIHTkriqqlneev 1447
Cdd:TIGR02168 580 SIKGTEIQGNdreiLKNIEGFLGVAKDLVKFDPKLRKALSyllgGVLVVDDLDNALELAKKLRPGYRIVT---------- 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1448 grLKAEIARSNASLTnnqnliqslredlsKARTEKEGIQKDLDAKIIDIQEKVKTITQvkkigrryktQFEELKAQQNKA 1527
Cdd:TIGR02168 650 --LDGDLVRPGGVIT--------------GGSAKTNSSILERRREIEELEEKIEELEE----------KIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1528 MEtstqssgdhqeqhisvqEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQdlqdk 1607
Cdd:TIGR02168 704 RK-----------------ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA----- 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1608 ttEEQLRQQMNEKTWKTLALAKSKIthlsgvkDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELRE 1687
Cdd:TIGR02168 762 --EIEELEERLEEAEEELAEAEAEI-------EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
730
....*....|...
gi 568907995 1688 H--QERHLEQRDE 1698
Cdd:TIGR02168 833 IaaTERRLEDLEE 845
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
87-585 |
4.15e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 62.44 E-value: 4.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 87 ELNKLPKSTQNKLEKFLAEQQSEIDCLKGRHEKfkveseqqyfeiekrlsqsqeRLVTETRECQNLRLELEKLNNQVKVL 166
Cdd:pfam15921 246 QLEALKSESQNKIELLLQQHQDRIEQLISEHEV---------------------EITGLTEKASSARSQANSIQSQLEII 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 167 TEKTKELETAQDRNLgiqSQFTRAKEELEAEKRDLIRTNErlsQEVEYLTEDVKRLNEKLKESNTTKGELQLKL----DE 242
Cdd:pfam15921 305 QEQARNQNSMYMRQL---SDLESTVSQLRSELREAKRMYE---DKIEELEKQLVLANSELTEARTERDQFSQESgnldDQ 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 243 LQASDVAVKYREKRLEQEKEllHNQNSW-LNTELKTKTDELLALGREKGNEILELKCNLENKKEEVL-RLEEQMNGLKTS 320
Cdd:pfam15921 379 LQKLLADLHKREKELSLEKE--QNKRLWdRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGK 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 321 NEHLQKhVEDLLTKLKEAKEqqasMEEKFHNELNA-HIKLSNLYKSAADDS----------EAKSNELTRAVDELHKLLK 389
Cdd:pfam15921 457 NESLEK-VSSLTAQLESTKE----MLRKVVEELTAkKMTLESSERTVSDLTaslqekeraiEATNAEITKLRSRVDLKLQ 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 390 EAgEANKTIQDHLLQVEESKDQMEKEMLEK---IGKLEKELENANDLLSATKRK-GAILSEEelaamsptaaavAKIVKp 465
Cdd:pfam15921 532 EL-QHLKNEGDHLRNVQTECEALKLQMAEKdkvIEILRQQIENMTQLVGQHGRTaGAMQVEK------------AQLEK- 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 466 gmkltelynayvETQDQlLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQ----KAVASLSAKLEQAMKEIQR 541
Cdd:pfam15921 598 ------------EINDR-RLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGserlRAVKDIKQERDQLLNEVKT 664
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568907995 542 LQEDTDKANKHSSVLERD----NQRMEIQIKDLSQQIRVLLMELEEAR 585
Cdd:pfam15921 665 SRNELNSLSEDYEVLKRNfrnkSEEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1351-1525 |
4.30e-09 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 59.55 E-value: 4.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1351 LREEKERLEQNLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKAR---NQQLINQQKDPdtEEYR 1427
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEAR---LEAAKTELED----LEKEIKRLELEIEEVEARikkYEEQLGNVRNN--KEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1428 KLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTItqVK 1507
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL--AA 170
|
170
....*....|....*...
gi 568907995 1508 KIGRRYKTQFEELKAQQN 1525
Cdd:COG1579 171 KIPPELLALYERIRKRKN 188
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1346-1692 |
7.81e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 7.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1346 ETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEE 1425
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1426 YRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNaslTNNQNLIQSLREDLSKARTEKEGIQ------KDLDAKIIDIQEK 1499
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSE---SENSEKQRELEEKQNEIEKLKKENQsykqeiKNLESQINDLESK 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1500 VKTITQVKKIG----RRYKTQFEELKAQQNKAMETSTQ--SSGDHQEQHISVQEMQ--ELKDTLSQSETKTKSLEGQV-- 1569
Cdd:TIGR04523 400 IQNQEKLNQQKdeqiKKLQQEKELLEKEIERLKETIIKnnSEIKDLTNQDSVKELIikNLDNTRESLETQLKVLSRSInk 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1570 -----ENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDL-QDKTTEEQLRQQMNEKTWKTLALAKSKIT--------HL 1635
Cdd:TIGR04523 480 ikqnlEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIsSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkeNL 559
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1636 SGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQ----------YEGRISRLERELREHQERH 1692
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEkkdlikeieeKEKKISSLEKELEKAKKEN 626
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1045-1664 |
8.80e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 8.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1045 EDSLNKEKQVteevhKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQ 1124
Cdd:TIGR04523 47 NELKNKEKEL-----KNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNK 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1125 RASTALSNEQQARRDCQEQAKIAVEAQNKyERELMLHAADVEALQAAKEQVSKMTSI----RQHLEETTQKAESQLLECK 1200
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKK-EKELEKLNNKYNDLKKQKEELENELNLlekeKLNIQKNIDKIKNKLLKLE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1201 ------ASWEERERVLKDEVSksvsrceDLEKQNRLLHDQIEKLSDKVV--TSMKDAVQAPLNVSLNEEGKSQEQILE-I 1271
Cdd:TIGR04523 201 lllsnlKKKIQKNKSLESQIS-------ELKKQNNQLKDNIEKKQQEINekTTEISNTQTQLNQLKDEQNKIKKQLSEkQ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1272 LRFIRREKEIAETRFEVAQVES-LRYRQRVELLERELQELQDSLNVEREKVQVtaktmaqHEELMKKTETMNVVMETNKM 1350
Cdd:TIGR04523 274 KELEQNNKKIKELEKQLNQLKSeISDLNNQKEQDWNKELKSELKNQEKKLEEI-------QNQISQNNKIISQLNEQISQ 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1351 LREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDtEEYRKLL 1430
Cdd:TIGR04523 347 LKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ-QEKELLE 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1431 SEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIG 1510
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1511 RRYKTQFEELKaqqnkametstqssgdhQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTL--SEKETEARSLQE 1588
Cdd:TIGR04523 506 KELEEKVKDLT-----------------KKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELkkENLEKEIDEKNK 568
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 1589 QTVQLQSELSRLrqdlqdKTTEEQLRQQMNEKTWKTLALaKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELD 1664
Cdd:TIGR04523 569 EIEELKQTQKSL------KKKQEEKQELIDQKEKEKKDL-IKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIK 637
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
300-1125 |
1.56e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 300 LENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfhNELNAHIKLSNlYKSAADDSEAKSNELTR 379
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK--REYEGYELLKE-KEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 380 AVDELHKLLKEAGEANKT---IQDHLLQVEES-KDQMEKEML---EKIGKLEKELENANDLLSATKRKGAILSEEElaam 452
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRleeIEQLLEELNKKiKDLGEEEQLrvkEKIGELEAEIASLERSIAEKERELEDAEERL---- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 453 sptAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKavaslsaKL 532
Cdd:TIGR02169 325 ---AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE-------KL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 533 EQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNhvIRDEEVSSADISSSSEVISQHLv 612
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE--IKKQEWKLEQLAADLSKYEQEL- 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 613 sYRNIEELQQQNQRLLFALRELGETREREEQETTSSKiaelqhkleNSLAELEQLRESRQHQMQLVDSIVRQRDMYRILL 692
Cdd:TIGR02169 472 -YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR---------GGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 693 SQTTGMAipLQASSLDD-------ISLLSTPKRS-----------STSQTVSTPAPEPVID------------------- 735
Cdd:TIGR02169 542 EVAAGNR--LNNVVVEDdavakeaIELLKRRKAGratflplnkmrDERRDLSILSEDGVIGfavdlvefdpkyepafkyv 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 736 --STEAIEAKAALKQLQ----------EIFE---------NYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDF 794
Cdd:TIGR02169 620 fgDTLVVEDIEAARRLMgkyrmvtlegELFEksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 795 ASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQ 874
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 875 QRESLLAEQRGQnllltNLQTIQGILERSEtETKQRLNSQIEKLEHEIshlkKKLENEVEQRHTLTRNLDVQLLDTKRQL 954
Cdd:TIGR02169 780 ALNDLEARLSHS-----RIPEIQAELSKLE-EEVSRIEARLREIEQKL----NRLTLEKEYLEKEIQELQEQRIDLKEQI 849
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 955 DTEinlhlntKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRddvDDLKSQLRQAEEQVNDLKERLKTSTSNV 1034
Cdd:TIGR02169 850 KSI-------EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER---DELEAQLRELERKIEELEAQIEKKRKRL 919
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1035 EQYRAMVTSLEDSLnkeKQVTEEVHKNIEVRLKESAEfqTQLEKKLMEVEKEKQELQDDKRKAI---ESMEQQLSELKKT 1111
Cdd:TIGR02169 920 SELKAKLEALEEEL---SEIEDPKGEDEEIPEEELSL--EDVQAELQRVEEEIRALEPVNMLAIqeyEEVLKRLDELKEK 994
|
890
....*....|....
gi 568907995 1112 LSTVQNEVQEALQR 1125
Cdd:TIGR02169 995 RAKLEEERKAILER 1008
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1332-1673 |
1.66e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 1.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1332 EELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV-----KR 1406
Cdd:TIGR04523 110 SEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlniqkNI 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1407 WKARNQQLINQQKDPDTEEYRKLLSEKEihtKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQ 1486
Cdd:TIGR04523 190 DKIKNKLLKLELLLSNLKKKIQKNKSLE---SQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1487 KDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQhisvqEMQELKDTLSQSETKTKSLE 1566
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEK-----KLEEIQNQISQNNKIISQLN 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1567 GQVENLQKTLSEKETEARSLQEQtvqlqselsrlrqdLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEI 1646
Cdd:TIGR04523 342 EQISQLKKELTNSESENSEKQRE--------------LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLN 407
|
330 340
....*....|....*....|....*..
gi 568907995 1647 EELKQRNGALDQQKDELDVRMTALKSQ 1673
Cdd:TIGR04523 408 QQKDEQIKKLQQEKELLEKEIERLKET 434
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-686 |
1.82e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.54 E-value: 1.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 104 AEQQSEIDCLKGRHEKFKVESEQQYFEIEK--RLSQSQE-RLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQdrn 180
Cdd:PTZ00121 1160 AEDARKAEEARKAEDAKKAEAARKAEEVRKaeELRKAEDaRKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAK--- 1236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 181 lgiqsqftraKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLN------EKLKESNTTKGELQLKLDELQASDVAVKYRE 254
Cdd:PTZ00121 1237 ----------KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQaaikaeEARKADELKKAEEKKKADEAKKAEEKKKADE 1306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 255 KRLEQEKELLHNQNSWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTK 334
Cdd:PTZ00121 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKK 1386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 335 LKEAKEQQASMEEKFHNELNA-HIKLSNLYKSAADDSEAKSNELTRAvDELHKLLKE---AGEANKTIQDHLLQVEESKD 410
Cdd:PTZ00121 1387 AEEKKKADEAKKKAEEDKKKAdELKKAAAAKKKADEAKKKAEEKKKA-DEAKKKAEEakkADEAKKKAEEAKKAEEAKKK 1465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 411 QMEKEMLEKIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQEN 490
Cdd:PTZ00121 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEK 1545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 491 KRIN--KYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIK 568
Cdd:PTZ00121 1546 KKADelKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 569 DLSQQIRVLLMELEEARGNHVIRDEEVSSADISSS---SEVISQHLVSYRNIEELQQQNQrllfalRELGETREREEQET 645
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikaAEEAKKAEEDKKKAEEAKKAEE------DEKKAAEALKKEAE 1699
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568907995 646 TSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRD 686
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
217-1538 |
3.14e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 59.68 E-value: 3.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 217 EDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELL----HNQNSWLNTELKTKTDELLALGREKGNE 292
Cdd:TIGR01612 480 DIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIIGfdidQNIKAKLYKEIEAGLKESYELAKNWKKL 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 293 ILELKCNLENKKEEVLRLEEQMNGLktSNEHLQKHVEDL-LTKLK-EAKEQQASMEEKfhnelNAHIKLSNLYKSAADDS 370
Cdd:TIGR01612 560 IHEIKKELEEENEDSIHLEKEIKDL--FDKYLEIDDEIIyINKLKlELKEKIKNISDK-----NEYIKKAIDLKKIIENN 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 371 EAKSNELTRAVD-ELHKLLKEAGEANKTIQDHLLQV-----------------EESKDQME-KEMLEKI-GKLEKELENA 430
Cdd:TIGR01612 633 NAYIDELAKISPyQVPEHLKNKDKIYSTIKSELSKIyeddidalynelssivkENAIDNTEdKAKLDDLkSKIDKEYDKI 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 431 NDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGM----------------KLTELYNAYVETQDQLLLEKQENKRI- 493
Cdd:TIGR01612 713 QNMETATVELHLSNIENKKNELLDIIVEIKKHIHGEInkdlnkiledfknkekELSNKINDYAKEKDELNKYKSKISEIk 792
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 494 NKYLDEI----VKEVEAKapilkrqrEEYERAQKAVASLSAKLEQAMKEIQRLQEDTDK-ANKHSSVLERDNQRMEiQIK 568
Cdd:TIGR01612 793 NHYNDQInidnIKDEDAK--------QNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDfLNKVDKFINFENNCKE-KID 863
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 569 DLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHL-VSYRNIEELQQQNQRLLFAlreLGETREREEQETTS 647
Cdd:TIGR01612 864 SEHEQFAELTNKIKAEISDDKLNDYEKKFNDSKSLINEINKSIeEEYQNINTLKKVDEYIKIC---ENTKESIEKFHNKQ 940
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 648 SKIAELQHKLENSLAELEQLRESRQHQMQ--LVDSIVRQRDMYRIL-LSQTTGMAIPLQASSLDDISLLSTPKRSSTSQT 724
Cdd:TIGR01612 941 NILKEILNKNIDTIKESNLIEKSYKDKFDntLIDKINELDKAFKDAsLNDYEAKNNELIKYFNDLKANLGKNKENMLYHQ 1020
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 725 V--STPAPEPVIDSTEAIEAK---------AALKQLQEIFENYKKEKIdsEKLQNEQLEKLQEQVTDLRS--QNTKISTQ 791
Cdd:TIGR01612 1021 FdeKEKATNDIEQKIEDANKNipnieiaihTSIYNIIDEIEKEIGKNI--ELLNKEILEEAEINITNFNEikEKLKHYNF 1098
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 792 LDFASKRYEMLQDNVEGYRREITSLQERNQK----LTATTQKQEQIINTMTQDLRGAnEKLAVAEVRAENL-----KKEK 862
Cdd:TIGR01612 1099 DDFGKEENIKYADEINKIKDDIKNLDQKIDHhikaLEEIKKKSENYIDEIKAQINDL-EDVADKAISNDDPeeiekKIEN 1177
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 863 EMLKLSEVR-LSQQRESLLAEQRGQNLLLTNLQTIQGIlersETETKQRLNSQ-IEKLEHEishlKKKLENEVEQRHTLT 940
Cdd:TIGR01612 1178 IVTKIDKKKnIYDEIKKLLNEIAEIEKDKTSLEEVKGI----NLSYGKNLGKLfLEKIDEE----KKKSEHMIKAMEAYI 1249
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 941 RNLD-----VQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQ 1015
Cdd:TIGR01612 1250 EDLDeikekSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELQK 1329
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1016 aeeqvnDLKERLKtSTSNVEQYRAMVTSLED--SLNKEKQVTEEVHKNIEVRLKESAEFQTQLEK--KLMEVEKEKQELQ 1091
Cdd:TIGR01612 1330 ------NLLDAQK-HNSDINLYLNEIANIYNilKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKseKLIKKIKDDINLE 1402
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1092 DDKRKaIESM--EQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYErelmlHAADVEALQ 1169
Cdd:TIGR01612 1403 ECKSK-IESTldDKDIDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQ-----HILKIKKDN 1476
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1170 AAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERE--RVLKDEVSKSVSRCEDLEKQNRLlhDQIEKLSDKVVTSMK 1247
Cdd:TIGR01612 1477 ATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKElfEQYKKDVTELLNKYSALAIKNKF--AKTKKDSEIIIKEIK 1554
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1248 DAvqapLNVSLNEEGKSQEQILEILR-FIRREKEIAETRFEVA-----QVESLRYRQRVELLERELQELQDSLNvEREKV 1321
Cdd:TIGR01612 1555 DA----HKKFILEAEKSEQKIKEIKKeKFRIEDDAAKNDKSNKaaidiQLSLENFENKFLKISDIKKKINDCLK-ETESI 1629
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1322 QVTAKTMA---QHEELMKKTETMNVVMETNKMLREEKERLE---QNLQQMQAKVRKLELDIlPLQEANAELSeksgmlqa 1395
Cdd:TIGR01612 1630 EKKISSFSidsQDTELKENGDNLNSLQEFLESLKDQKKNIEdkkKELDELDSEIEKIEIDV-DQHKKNYEIG-------- 1700
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1396 ekklLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDL 1475
Cdd:TIGR01612 1701 ----IIEKIKEIAIANKEEIESIKELIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETV 1776
|
1370 1380 1390 1400 1410 1420
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1476 SKARTEKEGIQkdlDAKIIDIQEKVKTItqvkKIGRRYKTQFEELKAQQNKAMETSTQSSGDH 1538
Cdd:TIGR01612 1777 SKEPITYDEIK---NTRINAQNEFLKII----EIEKKSKSYLDDIEAKEFDRIINHFKKKLDH 1832
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
164-960 |
4.73e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 58.83 E-value: 4.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 164 KVLTEKTKELETAQDRNLGIQSQFTRAKEELEAEKRD----LIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLK 239
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQakkaLEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 240 LDELQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKT 319
Cdd:pfam02463 249 EQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEK 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 320 SNEHLQKHVEDLLTKLKEAKEQQASMEEKFHN----ELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEAN 395
Cdd:pfam02463 329 ELKKEKEEIEELEKELKELEIKREAEEEEEEEleklQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQ 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 396 KtIQDHLLQVEESKDQMEKEMLEKIGKLEKELENA---------NDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKpg 466
Cdd:pfam02463 409 L-LLELARQLEDLLKEEKKEELEILEEEEESIELKqgklteekeELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ-- 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 467 mKLTELYNAYVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQrlQEDT 546
Cdd:pfam02463 486 -LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATAD--EVEE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 547 DKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEE------------VSSADISSSSEVISQHLVSY 614
Cdd:pfam02463 563 RQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKatleadeddkraKVVEGILKDTELTKLKESAK 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 615 RNIEELQQQNQRLLFALRELGETREREEQETTSSKIAELQHKLENSLAELEQlresRQHQMQLVDSIVRQRDMYRILLSQ 694
Cdd:pfam02463 643 AKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEI----LRRQLEIKKKEQREKEELKKLKLE 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 695 TTGMAIPLQASSLDDISLLSTPKRSSTSQTVStpapEPVIDSTEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKL 774
Cdd:pfam02463 719 AEELLADRVQEAQDKINEELKLLKQKIDEEEE----EEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEE 794
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 775 QEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINT-MTQDLRGANEKLAVAEV 853
Cdd:pfam02463 795 KLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELeRLEEEITKEELLQELLL 874
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 854 RAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNlqtiQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEV 933
Cdd:pfam02463 875 KEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLE----EKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEK 950
|
810 820
....*....|....*....|....*..
gi 568907995 934 EQRHTLTRNLDVQLLDTKRQLDTEINL 960
Cdd:pfam02463 951 EENNKEEEEERNKRLLLAKEELGKVNL 977
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
745-1292 |
4.84e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 4.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 745 ALKQLQEIFENYKKEKIDSEKLQnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLT 824
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFI-KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 825 AT---TQKQEQIINTMTQDLRGANEKLAVAEVRAENL-KKEKEMLKLSE-----VRLSQQRESLLAEQRGQNLLLTNL-Q 894
Cdd:PRK03918 242 ELekeLESLEGSKRKLEEKIRELEERIEELKKEIEELeEKVKELKELKEkaeeyIKLSEFYEEYLDELREIEKRLSRLeE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 895 TIQGILER-SETETKqrlNSQIEKLEHEISHLKKKLEnEVEQRHTLTRNLDvQLLDTKRQLDTEINLHLNTK-----ELL 968
Cdd:PRK03918 322 EINGIEERiKELEEK---EERLEELKKKLKELEKRLE-ELEERHELYEEAK-AKKEELERLKKRLTGLTPEKlekelEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 969 KNAQKDIATLKQHLNNMEAQLASQSTQRtgqpgdRDDVDDLKSQLRQ--------AEEQVNDLKERLKTSTSNVEQYRAM 1040
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKEIKEL------KKAIEELKKAKGKcpvcgrelTEEHRKELLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1041 VTSLEDSLNKEKQVTEEVHKNIE--VRLKESAEFQTQLEKKLMEVEKEKQElqdDKRKAIESMEQQLSELKKTLSTVQNE 1118
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNLEELE---KKAEEYEKLKEKLIKLKGEIKSLKKE 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1119 VQ--EALQRASTALSNE-QQARRDCQEQAKIAVEAQNKYERELmlhAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQ 1195
Cdd:PRK03918 548 LEklEELKKKLAELEKKlDELEEELAELLKELEELGFESVEEL---EERLKELEPFYNEYLELKDAEKELEREEKELKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1196 LLECKASWEERERVLKDeVSKSVSRCEDLEKqnRLLHDQIEKLSDKVVTsmKDAVQAPLNVSLNEEGKSQEQILEILRFI 1275
Cdd:PRK03918 625 EEELDKAFEELAETEKR-LEELRKELEELEK--KYSEEEYEELREEYLE--LSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570
....*....|....*...
gi 568907995 1276 RREK-EIAETRFEVAQVE 1292
Cdd:PRK03918 700 KEELeEREKAKKELEKLE 717
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
915-1650 |
5.09e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.70 E-value: 5.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 915 IEKLEHEIShlkkKLENEVEQRHTLtrnlDVQLLDTKRQLdteINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQST 994
Cdd:pfam12128 236 IMKIRPEFT----KLQQEFNTLESA----ELRLSHLHFGY---KSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 995 QRTGqpgdrdDVDDLKSQLRQAEEQVNDLKERLKT-STSNVEQYRAMVtSLEDSLNKEKQVTEEVHKNIEVRLKE-SAEF 1072
Cdd:pfam12128 305 ELNG------ELSAADAAVAKDRSELEALEDQHGAfLDADIETAAADQ-EQLPSWQSELENLEERLKALTGKHQDvTAKY 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1073 QTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQN 1152
Cdd:pfam12128 378 NRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQAT 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1153 KYERELMLHAADVEALQAAKEQ-------VSKMTSIRQHLEETTQKAESQLLECKASWEERERVLkDEV-----SKSVSR 1220
Cdd:pfam12128 458 ATPELLLQLENFDERIERAREEqeaanaeVERLQSELRQARKRRDQASEALRQASRRLEERQSAL-DELelqlfPQAGTL 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1221 CEDLEKQNRLLHDQIEKLSDKVVTSMKDavqapLNVSLNEEGKSQEQILEILrfirrekeiaetRFEVAQVESLRYRQRV 1300
Cdd:pfam12128 537 LHFLRKEAPDWEQSIGKVISPELLHRTD-----LDPEVWDGSVGGELNLYGV------------KLDLKRIDVPEWAASE 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1301 ELLERELQELQDSLNVEREKVQVTAKTMAQ-HEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKleldilPL 1379
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQaNGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNK------AL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1380 QEANAELSEKSGMLQAEKKLLEEDVKRWKArnqqlinQQKDpdteeyrkllSEKEIHTKRIQQLNEEVGRLKAEIARSNA 1459
Cdd:pfam12128 674 AERKDSANERLNSLEAQLKQLDKKHQAWLE-------EQKE----------QKREARTEKQAYWQVVEGALDAQLALLKA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1460 SltnnqnlIQSLREDLsKARTE--KEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYktqfeelkaqQNKAMETSTQSSGD 1537
Cdd:pfam12128 737 A-------IAARRSGA-KAELKalETWYKRDLASLGVDPDVIAKLKREIRTLERKI----------ERIAVRRQEVLRYF 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1538 HQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKT----LSEKETEARSLQEQTVQLQSELSRLRqDLQDKTTEEQL 1613
Cdd:pfam12128 799 DWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADtklrRAKLEMERKASEKQQVRLSENLRGLR-CEMSKLATLKE 877
|
730 740 750 760
....*....|....*....|....*....|....*....|
gi 568907995 1614 RQQMNE---KTWKTLALAKSKITHLSGVKDQLTKEIEELK 1650
Cdd:pfam12128 878 DANSEQaqgSIGERLAQLEDLKLKRDYLSESVKKYVEHFK 917
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
798-1409 |
6.03e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 58.54 E-value: 6.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 798 RYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRE 877
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 878 SLLAEQRGQNLLLTNLqtiqgileRSETETKQRLNSQIEKLEHEISHLKKKLE--NEVEQRHTLTRNLdvqlldtkrqld 955
Cdd:PRK03918 239 EIEELEKELESLEGSK--------RKLEEKIRELEERIEELKKEIEELEEKVKelKELKEKAEEYIKL------------ 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 956 teINLHLNTKELLKNAQKDIATLKQHLNNMEAQLasqstqrtgqpgdrddvddlkSQLRQAEEQVNDLKERLKTSTSNVE 1035
Cdd:PRK03918 299 --SEFYEEYLDELREIEKRLSRLEEEINGIEERI---------------------KELEEKEERLEELKKKLKELEKRLE 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1036 QYRAMVTSLEDSLNKEKQVtEEVHKNIEVRLKEsaefqtQLEKKLMEVEKEKQELQDDKRKAIE---SMEQQLSELKKTL 1112
Cdd:PRK03918 356 ELEERHELYEEAKAKKEEL-ERLKKRLTGLTPE------KLEKELEELEKAKEEIEEEISKITArigELKKEIKELKKAI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1113 stvqNEVQEALQRASTA---LSNEQQA---RRDCQEQAKIAVEAQ--NKYERELMLHAADVEALQAAKEQVSKMTSIRQH 1184
Cdd:PRK03918 429 ----EELKKAKGKCPVCgreLTEEHRKellEEYTAELKRIEKELKeiEEKERKLRKELRELEKVLKKESELIKLKELAEQ 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1185 LEETTQKAES-QLLECKASWEERERV------LKDEVS---KSVSRCEDLEKQNRLLHDQIEKLSDKVvtsmkdavqAPL 1254
Cdd:PRK03918 505 LKELEEKLKKyNLEELEKKAEEYEKLkeklikLKGEIKslkKELEKLEELKKKLAELEKKLDELEEEL---------AEL 575
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1255 NVSLNEEGKS-----QEQILEILRFIRREKEI--AETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKT 1327
Cdd:PRK03918 576 LKELEELGFEsveelEERLKELEPFYNEYLELkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1328 MAQHEELMKKTETMNVVMETnKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELsEKSGMLQAEKKLLEEDVKRW 1407
Cdd:PRK03918 656 YSEEEYEELREEYLELSREL-AGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL-EKLEKALERVEELREKVKKY 733
|
..
gi 568907995 1408 KA 1409
Cdd:PRK03918 734 KA 735
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1394-1607 |
6.35e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 57.47 E-value: 6.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1394 QAEKKLleEDVKRWKARNQQLINQQKdpdtEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLRE 1473
Cdd:COG4942 24 EAEAEL--EQLQQEIAELEKELAALK----KEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1474 DLSKARTE---------KEGIQKDLDAKII--DIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQH 1542
Cdd:COG4942 98 ELEAQKEElaellralyRLGRQPPLALLLSpeDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1543 ISVQEMQELKDTLSQSETKTKSLegqVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDK 1607
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKL---LARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
104-594 |
9.58e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 57.84 E-value: 9.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 104 AEQQSEIDCLKGRHEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTK----ELETAQDR 179
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEaaadEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 180 NLGIQSQFTRAKEELEAEKRDliRTNERLSQEVEYLTEDVKRLNEKLKESNTTKG---ELQLKLDELQASDVAVKYREKR 256
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKK--AEEKKKADEAKKKAEEDKKKADELKKAAAAKKkadEAKKKAEEKKKADEAKKKAEEA 1443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 257 LEQEK------ELLHNQNSWLNTELKTKTDELLALGREKgNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVED 330
Cdd:PTZ00121 1444 KKADEakkkaeEAKKAEEAKKKAEEAKKADEAKKKAEEA-KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 331 LLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKD 410
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 411 QMEKEMLEKIGKLEKELENANDLLSAtkrkgailsEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQEN 490
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKA---------EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED 1673
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 491 KRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDL 570
Cdd:PTZ00121 1674 KKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
|
490 500
....*....|....*....|....
gi 568907995 571 SQQIRVLLMELEEARGNHVIRDEE 594
Cdd:PTZ00121 1754 EEKKKIAHLKKEEEKKAEEIRKEK 1777
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
134-551 |
1.11e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.77 E-value: 1.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 134 RLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEK----TKELETAQDRNLGIQSQFTRAKEELEAEKRDLirtnERLS 209
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQElsdaSRKIGEIEKEIEQLEQEEEKLKERLEELEEDL----SSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 210 QEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKellhnqnswLNTELKTKTDELLALGREK 289
Cdd:TIGR02169 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK---------LEEEVSRIEARLREIEQKL 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 290 GNEILE---LKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEkfhnelnahiKLSNLYKsa 366
Cdd:TIGR02169 822 NRLTLEkeyLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES----------RLGDLKK-- 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 367 addseaksneltravdelhkllkeageanktiqdhllQVEESKDQMeKEMLEKIGKLEKELENANDLLSATKRKGAILsE 446
Cdd:TIGR02169 890 -------------------------------------ERDELEAQL-RELERKIEELEAQIEKKRKRLSELKAKLEAL-E 930
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 447 EELAAMSPTAAAVAKIVKPGMKLTELYnayvetqdqlllekqenkrinKYLDEIVKEVEAKAPILKRQREEYERAQKAVA 526
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEELSLEDVQ---------------------AELQRVEEEIRALEPVNMLAIQEYEEVLKRLD 989
|
410 420
....*....|....*....|....*
gi 568907995 527 SLSAKLEQAMKEIQRLQEDTDKANK 551
Cdd:TIGR02169 990 ELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1016-1688 |
1.66e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 1.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1016 AEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSL-NKEKQVTEEVHKNIEVRLKESaefqtQLEKKLMEVEKEKQELQDDK 1094
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEELIkEKEKELEEVLREINEISSELP-----ELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1095 RKaIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQnKYERELMLHAADVEALQAAKEQ 1174
Cdd:PRK03918 238 EE-IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE-EYIKLSEFYEEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1175 VSKMTSIRQHLEETTQKAESqlLECKASW-EERERVLKDEVSKSVSRCEDLEKQNRLLhDQIEKLSDKVVTSMKDAVQAP 1253
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEE--KEERLEElKKKLKELEKRLEELEERHELYEEAKAKK-EELERLKKRLTGLTPEKLEKE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1254 LNVSLNEEGKSQEQILEILRFIRR-EKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHE 1332
Cdd:PRK03918 393 LEELEKAKEEIEEEISKITARIGElKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1333 ELMKKtetmnvvmetnkmLREEKERLEqnlqqmqaKVRKLELDILPLQEANAELSEksgmlqAEKKLLEEDVKRWKArnq 1412
Cdd:PRK03918 473 EKERK-------------LRKELRELE--------KVLKKESELIKLKELAEQLKE------LEEKLKKYNLEELEK--- 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1413 qlinqqkdpDTEEYRKLlsekeihtkriqqlNEEVGRLKAEIARSNASLTNNQNLIQSLREdlskartekegiqkdLDAK 1492
Cdd:PRK03918 523 ---------KAEEYEKL--------------KEKLIKLKGEIKSLKKELEKLEELKKKLAE---------------LEKK 564
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1493 IIDIQEKVKTItqVKKIGRRYKTQFEELKAQqnkametstqsSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENL 1572
Cdd:PRK03918 565 LDELEEELAEL--LKELEELGFESVEELEER-----------LKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKA 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1573 QKTLSEKETEARSLQEQTVQLQSELSrlrqdlqdKTTEEQLRQQMNEKTwKTLALAKSKITHLSGVKDQLTKEIEELKQR 1652
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYS--------EEEYEELREEYLELS-RELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
650 660 670
....*....|....*....|....*....|....*...
gi 568907995 1653 NGALDQQKDELDVRMTALKSQYEGR--ISRLERELREH 1688
Cdd:PRK03918 703 LEEREKAKKELEKLEKALERVEELRekVKKYKALLKER 740
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
736-1118 |
1.93e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 1.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 736 STEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTqldfaskryemLQDNVEGYRREITS 815
Cdd:TIGR04523 231 KDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-----------LEKQLNQLKSEISD 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 816 L-QERNQKLTAT-----TQKQEQIINTMTQdLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQR-------ESLLAE 882
Cdd:TIGR04523 300 LnNQKEQDWNKElkselKNQEKKLEEIQNQ-ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELeekqneiEKLKKE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 883 QRGQNLLLTNLQTIQGILE---RSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTEIN 959
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLEskiQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK-DLTNQDSVKELIIK 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 960 LHLNTKELLKNAQKD----IATLKQHLNNMEAQLASQSTQrtgqpgdrddVDDLKSQLRQAEEQVNDLKERLKTSTSNVE 1035
Cdd:TIGR04523 458 NLDNTRESLETQLKVlsrsINKIKQNLEQKQKELKSKEKE----------LKKLNEEKKELEEKVKDLTKKISSLKEKIE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1036 QYRAMVT-------SLEDSLNKEKQVT-----EEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDK---RKAIES 1100
Cdd:TIGR04523 528 KLESEKKekeskisDLEDELNKDDFELkkenlEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKkdlIKEIEE 607
|
410
....*....|....*...
gi 568907995 1101 MEQQLSELKKTLSTVQNE 1118
Cdd:TIGR04523 608 KEKKISSLEKELEKAKKE 625
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
740-1280 |
2.07e-07 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 56.37 E-value: 2.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 740 IEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKLQEqvtdlrSQNTK-ISTQLDFASKRYEMLQDNVEGYRREITSLqe 818
Cdd:pfam10174 188 AEAEMQLGHLEVLLDQKEKENIHLREELHRRNQLQPD------PAKTKaLQTVIEMKDTKISSLERNIRDLEDEVQML-- 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 819 RNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLS---EVRLSQQ----------RESLLAEQRG 885
Cdd:pfam10174 260 KTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQtklETLTNQNsdckqhievlKESLTAKEQR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 886 QNLLLTNLQTIQGILERSE------TETKQRLNSQIEKLEHEISHLKKKL---ENEVEQRHTLTRNLDVQLLDTKRQLDt 956
Cdd:pfam10174 340 AAILQTEVDALRLRLEEKEsflnkkTKQLQDLTEEKSTLAGEIRDLKDMLdvkERKINVLQKKIENLQEQLRDKDKQLA- 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 957 einlhlNTKELLKNAQKDIATLKQHLNNMEAQLASQS--TQRTGQPGDRDD------VDDLKSQLRQAEEQVN------- 1021
Cdd:pfam10174 419 ------GLKERVKSLQTDSSNTDTALTTLEEALSEKEriIERLKEQREREDrerleeLESLKKENKDLKEKVSalqpelt 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1022 -------DLKE--------------RLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLK------------- 1067
Cdd:pfam10174 493 ekessliDLKEhasslassglkkdsKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEINDRirlleqevaryke 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1068 ESAEFQTQLEkKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQealqrastalSNEQQARRDCQEQAKIA 1147
Cdd:pfam10174 573 ESGKAQAEVE-RLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIK----------HGQQEMKKKGAQLLEEA 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1148 VEAQNKyerelmlhAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQllecKASWEERERVL---KDEVSKSVSrcEDL 1224
Cdd:pfam10174 642 RRREDN--------LADNSQQLQLEELMGALEKTRQELDATKARLSST----QQSLAEKDGHLtnlRAERRKQLE--EIL 707
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1225 E-KQNRLLhdqieklsdkVVTSMKDAVQAPLNVSLNEEGKSQEQILEilrfIRREKE 1280
Cdd:pfam10174 708 EmKQEALL----------AAISEKDANIALLELSSSKKKKTQEEVMA----LKREKD 750
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1204-1709 |
2.18e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 56.61 E-value: 2.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1204 EERERVLKDevsksVSRCEDLEKQNRLLHDqIEKLSDKVVTSMKDAVQAPLNVS--LNEEGKSQEQILEILRFIRRE--- 1278
Cdd:PRK03918 145 ESREKVVRQ-----ILGLDDYENAYKNLGE-VIKEIKRRIERLEKFIKRTENIEelIKEKEKELEEVLREINEISSElpe 218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1279 --KEIAETRFEVAQVESLR------------YRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVV 1344
Cdd:PRK03918 219 lrEELEKLEKEVKELEELKeeieelekelesLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKL 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1345 METNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLE---------EDVKRWKARNQQLI 1415
Cdd:PRK03918 299 SEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEeleerhelyEEAKAKKEELERLK 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1416 NQQKDPDTEEYRKLLSE----KEIHTKRIQQLNEEVGRLKAEIARSNASLT-------------------NNQNLIQSLR 1472
Cdd:PRK03918 379 KRLTGLTPEKLEKELEElekaKEEIEEEISKITARIGELKKEIKELKKAIEelkkakgkcpvcgrelteeHRKELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1473 EDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKT--------------QFEELKAQQNKAMETSTQSSGDH 1538
Cdd:PRK03918 459 AELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeqlkeleeklkkyNLEELEKKAEEYEKLKEKLIKLK 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1539 QEQHI---SVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQ 1615
Cdd:PRK03918 539 GEIKSlkkELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1616 QMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGalDQQKDELDVRMTALKSQYEGRISRLE--RELREHQERHL 1693
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEelEKRREEIKKTL 696
|
570
....*....|....*.
gi 568907995 1694 EQRDEPQEPTNKAPEQ 1709
Cdd:PRK03918 697 EKLKEELEEREKAKKE 712
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1063-1714 |
2.29e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 2.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1063 EVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESME--QQLSELKKTLSTvqNEVQEALQRASTALSNEQQARRDC 1140
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKElkAELRELELALLV--LRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1141 QEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSKSvsr 1220
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL--- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1221 cEDLEKQNRLLHDQIEKLSdKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFirrEKEIAETRfevAQVESLRYR-QR 1299
Cdd:TIGR02168 333 -DELAEELAELEEKLEELK-EELESLEAELEELEAELEELESRLEELEEQLETL---RSKVAQLE---LQIASLNNEiER 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1300 VELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKleldilpL 1379
Cdd:TIGR02168 405 LEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQA-------L 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1380 QEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPD-----------TEEYRK------------LLSEKEIH 1436
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisvDEGYEAaieaalggrlqaVVVENLNA 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1437 TKRIQQL--NEEVGRL---------KAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQ 1505
Cdd:TIGR02168 558 AKKAIAFlkQNELGRVtflpldsikGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALEL 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1506 VKKIGRRYKtqFEELKAQQNKAMETSTQSSGDHQEQHISV-QEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEAR 1584
Cdd:TIGR02168 638 AKKLRPGYR--IVTLDGDLVRPGGVITGGSAKTNSSILERrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1585 SLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELD 1664
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 568907995 1665 VRMTALKSQyegrISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQIT 1714
Cdd:TIGR02168 796 EELKALREA----LDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
98-416 |
2.85e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 2.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 98 KLEKFLAEQQSEIDCLKGRHEKFKVESEQqyfeIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQ 177
Cdd:TIGR02168 716 QLRKELEELSRQISALRKDLARLEAEVEQ----LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 178 DRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASdvavkyrekrL 257
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----------I 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 258 EQEKELLhnqnswlnTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKE 337
Cdd:TIGR02168 862 EELEELI--------EELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 338 AKEQQASMEEKFHNE----LNAHIKLSNLYKSAADDSEAKSNELTRAVDELhkllkeaGEANKTIQDHLLQVEESKDQME 413
Cdd:TIGR02168 934 LEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEARRRLKRLENKIKEL-------GPVNLAAIEEYEELKERYDFLT 1006
|
...
gi 568907995 414 KEM 416
Cdd:TIGR02168 1007 AQK 1009
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
497-1208 |
2.99e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.28 E-value: 2.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 497 LDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAmkeiQRLQEDTdkaNKHSSVLERDNQRMEIQIKDLSQQIRV 576
Cdd:pfam15921 119 LQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAA----KCLKEDM---LEDSNTQIEQLRKMMLSHEGVLQEIRS 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 577 LLMELEEARGNHVIRDEEVSSADISSSSEVISQhlvsyrnieelqqqnqrllfALRELgetrereeqettSSKIAELQHK 656
Cdd:pfam15921 192 ILVDFEEASGKKIYEHDSMSTMHFRSLGSAISK--------------------ILREL------------DTEISYLKGR 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 657 LENSLAELEQLRESRQHQMQLvdsivrqrdmyriLLSQTTGMAIPLQASSLDDISLLSTPKRSSTSQTVSTPAPEPVIDS 736
Cdd:pfam15921 240 IFPVEDQLEALKSESQNKIEL-------------LLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 737 TEAIEAKAALKQLQEI---FENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGY---- 809
Cdd:pfam15921 307 QARNQNSMYMRQLSDLestVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladl 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 810 ---RREITSLQERNQKL---------------------TATTQKQEQIINTMTQD-----------LRGANEKLAVAEVR 854
Cdd:pfam15921 387 hkrEKELSLEKEQNKRLwdrdtgnsitidhlrrelddrNMEVQRLEALLKAMKSEcqgqmerqmaaIQGKNESLEKVSSL 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 855 AENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERSETETkQRLNSQIEKLEHEISHLKKKlENEVE 934
Cdd:pfam15921 467 TAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEI-TKLRSRVDLKLQELQHLKNE-GDHLR 544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 935 QRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHlnnmEAQLASQSTQRTGQPGDRDDVDDLK-SQL 1013
Cdd:pfam15921 545 NVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVE----KAQLEKEINDRRLELQEFKILKDKKdAKI 620
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1014 RQAEEQVNDLK-ERLKTSTSNVEQYRA----------MVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLME 1082
Cdd:pfam15921 621 RELEARVSDLElEKVKLVNAGSERLRAvkdikqerdqLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQ 700
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1083 VEKEKQELQdDKRKAIESMEQQLSELKKTLSTVQNEVQ------EALQRASTALsneQQARRDCQEQAKIAVEAQNKYER 1156
Cdd:pfam15921 701 LKSAQSELE-QTRNTLKSMEGSDGHAMKVAMGMQKQITakrgqiDALQSKIQFL---EEAMTNANKEKHFLKEEKNKLSQ 776
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 1157 ELMLHAAD----VEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERER 1208
Cdd:pfam15921 777 ELSTVATEknkmAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQ 832
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1437-1652 |
3.72e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1437 TKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQ 1516
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1517 FEELKAQQNKAMETSTQSSGDHQEQHI-SVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQS 1595
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLlSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1596 ELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQR 1652
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
743-1402 |
3.79e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 3.79e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 743 KAALKQLQEIFENYKKEKidsEKLQNEqLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQK 822
Cdd:TIGR02169 335 LAEIEELEREIEEERKRR---DKLTEE-YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 823 LTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEkemLKLSEVRLSQQRESLLAEQRGQnllltnlqtiqgileR 902
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALE---IKKQEWKLEQLAADLSKYEQEL---------------Y 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 903 SETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDV-------------QLLDTKRQLDTEINLHLNTKelLK 969
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVlkasiqgvhgtvaQLGSVGERYATAIEVAAGNR--LN 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 970 N--------AQKDIATLKQH---------LNNMeaqlasQSTQRTGQPGDRDDVDDLKSQLRQAEEQVND---------- 1022
Cdd:TIGR02169 551 NvvveddavAKEAIELLKRRkagratflpLNKM------RDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtl 624
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1023 LKERLKTSTSNVEQYRaMVTSLEDSLNKEKQVT---EEVHKNIEVRLKESAEFQtQLEKKLMEVEKEKQELQDDKRK--- 1096
Cdd:TIGR02169 625 VVEDIEAARRLMGKYR-MVTLEGELFEKSGAMTggsRAPRGGILFSRSEPAELQ-RLRERLEGLKRELSSLQSELRRien 702
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1097 AIESMEQQLSELKKTLSTVQNEVQEALQRASTalSNEQQArrDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQV- 1175
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEK--LKERLE--ELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLe 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1176 SKMTSIRQHLeettqkAESQLLECKASWEErervLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKvvtsMKDAVQAPLN 1255
Cdd:TIGR02169 779 EALNDLEARL------SHSRIPEIQAELSK----LEEEVSRIEARLREIEQKLNRLTLEKEYLEKE----IQELQEQRID 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1256 VSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVES-----LRYRQRVELLERELQELQDSLNVEREKV-----QVTA 1325
Cdd:TIGR02169 845 LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESrlgdlKKERDELEAQLRELERKIEELEAQIEKKrkrlsELKA 924
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1326 KTMAQHEELmKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLE-LDILPLQE------ANAELSEKSGMLQAEKK 1398
Cdd:TIGR02169 925 KLEALEEEL-SEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpVNMLAIQEyeevlkRLDELKEKRAKLEEERK 1003
|
....
gi 568907995 1399 LLEE 1402
Cdd:TIGR02169 1004 AILE 1007
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
746-1131 |
3.81e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 3.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 746 LKQLQEIFENYKKEKIDSEKL----------QNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITS 815
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQisqnnkiisqLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKN 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 816 LQERNQKLTATTQKQEQIINTMTQDLRGANEklavaevraENLKKEKEMLKLSEVRLSQQRE--SLLAEQRGQNLLLTNL 893
Cdd:TIGR04523 389 LESQINDLESKIQNQEKLNQQKDEQIKKLQQ---------EKELLEKEIERLKETIIKNNSEikDLTNQDSVKELIIKNL 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 894 QTiqgilerseteTKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTEI-NLHLNTKELLKNAQ 972
Cdd:TIGR04523 460 DN-----------TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELK-KLNEEKKELEEKVkDLTKKISSLKEKIE 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 973 K---DIATLKQHLNNMEAQLASQSTQRTGqpgdrddvDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDsln 1049
Cdd:TIGR04523 528 KlesEKKEKESKISDLEDELNKDDFELKK--------ENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEK--- 596
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1050 KEKQVTEEVHKNIEVrlkesaefQTQLEKKLMEVEKEKQELQDDKRK---AIESMEQQLSELKKTLSTVQNEVQEALQRA 1126
Cdd:TIGR04523 597 EKKDLIKEIEEKEKK--------ISSLEKELEKAKKENEKLSSIIKNiksKKNKLKQEVKQIKETIKEIRNKWPEIIKKI 668
|
....*
gi 568907995 1127 STALS 1131
Cdd:TIGR04523 669 KESKT 673
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
87-431 |
3.94e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 3.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 87 ELNKLPKSTQNKLEKFLAEQQSEIdclkgrhEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQvkvL 166
Cdd:TIGR04523 296 EISDLNNQKEQDWNKELKSELKNQ-------EKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRE---L 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 167 TEKTKELETAQDRNlgiqSQFTRAKEELEAEKRDlirtnerLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAS 246
Cdd:TIGR04523 366 EEKQNEIEKLKKEN----QSYKQEIKNLESQIND-------LESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKET 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 247 DVAVKYREKRLEQE---KELLHNQNSWLNTELKTKTDELLalgrekgNEILELKCNLENKKEEVLRLEEQMNGLKTSNEH 323
Cdd:TIGR04523 435 IIKNNSEIKDLTNQdsvKELIIKNLDNTRESLETQLKVLS-------RSINKIKQNLEQKQKELKSKEKELKKLNEEKKE 507
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 324 LQKHVEDLLTKLKEAKEQQASME-EKFHNELNAHIKLSNLYKsaaDDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHL 402
Cdd:TIGR04523 508 LEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEDELNK---DDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
330 340 350
....*....|....*....|....*....|....*....
gi 568907995 403 LQVEESKDQMEKEMLE----------KIGKLEKELENAN 431
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDlikeieekekKISSLEKELEKAK 623
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
753-1673 |
4.03e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.83 E-value: 4.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 753 FENYKKEKIDSE---------KLQNE----QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQdNVEGYRREITSLQER 819
Cdd:TIGR01612 854 FENNCKEKIDSEheqfaeltnKIKAEisddKLNDYEKKFNDSKSLINEINKSIEEEYQNINTLK-KVDEYIKICENTKES 932
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 820 NQKLTATTQKQEQIINTMTQDLRGANeklaVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGI 899
Cdd:TIGR01612 933 IEKFHNKQNILKEILNKNIDTIKESN----LIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNNELIKYFNDLKAN 1008
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 900 LERSETETkqrLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEI--NLHLNTKELLKNAQKDIAt 977
Cdd:TIGR01612 1009 LGKNKENM---LYHQFDEKEKATNDIEQKIEDANKNIPNIEIAIHTSIYNIIDEIEKEIgkNIELLNKEILEEAEINIT- 1084
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 978 lkqHLNNMEAQLASQSTQRTGQPGD---RDDV----DDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSL-- 1048
Cdd:TIGR01612 1085 ---NFNEIKEKLKHYNFDDFGKEENikyADEInkikDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVAdk 1161
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1049 ---NKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEK-EKQELQDDKRKAIES----------MEQQLSELKKTLST 1114
Cdd:TIGR01612 1162 aisNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEiEKDKTSLEEVKGINLsygknlgklfLEKIDEEKKKSEHM 1241
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1115 VQN-----EVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMT---SIRQHLE 1186
Cdd:TIGR01612 1242 IKAmeayiEDLDEIKEKSPEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIedfSEESDIN 1321
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1187 ETTQKAESQLLECKASWEERERVL---------------KDEVSKSVSRCEDLEKQNRLLHDQIEKlSDKVVTSMKDavq 1251
Cdd:TIGR01612 1322 DIKKELQKNLLDAQKHNSDINLYLneianiynilklnkiKKIIDEVKEYTKEIEENNKNIKDELDK-SEKLIKKIKD--- 1397
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1252 aplNVSLnEEGKSQ--------------EQILEILRFIRREKEIAETRFEVAQveslRYRQRVELLERelqelqdslNVE 1317
Cdd:TIGR01612 1398 ---DINL-EECKSKiestlddkdideciKKIKELKNHILSEESNIDTYFKNAD----ENNENVLLLFK---------NIE 1460
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1318 rekvqvTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEksgMLQAEK 1397
Cdd:TIGR01612 1461 ------MADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDVTE---LLNKYS 1531
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1398 KL-LEEDVKRWKARNQQLINQQKDPdteeYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNAS-------------LTN 1463
Cdd:TIGR01612 1532 ALaIKNKFAKTKKDSEIIIKEIKDA----HKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSnkaaidiqlslenFEN 1607
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1464 NQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEkvktiTQVKKIGRRYKT--QFEELKAQQNKAME------------ 1529
Cdd:TIGR01612 1608 KFLKISDIKKKINDCLKETESIEKKISSFSIDSQD-----TELKENGDNLNSlqEFLESLKDQKKNIEdkkkeldeldse 1682
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1530 -TSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKS----LEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRqdl 1604
Cdd:TIGR01612 1683 iEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESikelIEPTIENLISSFNTNDLEGIDPNEKLEEYNTEIGDIY--- 1759
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 1605 qdktteEQLRQQMNEKTWKTLALAKSKITHLS------GVKDQLTKEIEELKQRNGALDQQK-DELDVRMTALKSQ 1673
Cdd:TIGR01612 1760 ------EEFIELYNIIAGCLETVSKEPITYDEikntriNAQNEFLKIIEIEKKSKSYLDDIEaKEFDRIINHFKKK 1829
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
128-1121 |
4.34e-07 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 55.83 E-value: 4.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 128 YFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQDRnlgiQSQFTRAKEElEAEkrdlirtner 207
Cdd:TIGR01612 746 HGEINKDLNKILEDFKNKEKELSNKINDYAKEKDELNKYKSKISEIKNHYND----QINIDNIKDE-DAK---------- 810
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 208 lsQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDE-LQASDVAVKYrEKRLEQEKELLHNQNSWLNTELKTK-TDELLAL 285
Cdd:TIGR01612 811 --QNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDfLNKVDKFINF-ENNCKEKIDSEHEQFAELTNKIKAEiSDDKLND 887
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 286 GREKGNEILELKCNLENKKEEVLrleEQMNGLKTSNEHLqKHVEDLLTKLKEAKEQQASMEEKFHNELNAhIKLSNLY-K 364
Cdd:TIGR01612 888 YEKKFNDSKSLINEINKSIEEEY---QNINTLKKVDEYI-KICENTKESIEKFHNKQNILKEILNKNIDT-IKESNLIeK 962
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 365 SAADDSEaksNELTRAVDELHKLLKEAGeanktiqdhlLQVEESKDQmekEMLEKIGKLEKELenandllsaTKRKGAIL 444
Cdd:TIGR01612 963 SYKDKFD---NTLIDKINELDKAFKDAS----------LNDYEAKNN---ELIKYFNDLKANL---------GKNKENML 1017
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 445 SEEELAAMSPTAAAVAKIVK-----PGMKL---TELYNAYVEtqdqllLEKQENKRINKYLDEIVKEVEAKAPILKRQRE 516
Cdd:TIGR01612 1018 YHQFDEKEKATNDIEQKIEDankniPNIEIaihTSIYNIIDE------IEKEIGKNIELLNKEILEEAEINITNFNEIKE 1091
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 517 EYERAQKAVASLSAKLEQAmKEIQRLQED----TDKANKHSSVLERDNQRMEIQIKDLSQQIRVLlmeleEARGNHVIRD 592
Cdd:TIGR01612 1092 KLKHYNFDDFGKEENIKYA-DEINKIKDDiknlDQKIDHHIKALEEIKKKSENYIDEIKAQINDL-----EDVADKAISN 1165
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 593 EEVSSADISSSSEV--ISQHLVSYRNIEELQ------QQNQRLLFALRELGETREREEQETTSSKIAELQHKLENSLAEL 664
Cdd:TIGR01612 1166 DDPEEIEKKIENIVtkIDKKKNIYDEIKKLLneiaeiEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAM 1245
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 665 EQLresrqhqMQLVDSIVRQRDmyRILLSQTTGMAIPLQASSLDdISLLSTPKRSSTSQTVStpapEPVIDSTEaieaka 744
Cdd:TIGR01612 1246 EAY-------IEDLDEIKEKSP--EIENEMGIEMDIKAEMETFN-ISHDDDKDHHIISKKHD----ENISDIRE------ 1305
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 745 alKQLQEIFENYKKEKIDSEKlqneqlEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQ--------DNVEGYRREItsl 816
Cdd:TIGR01612 1306 --KSLKIIEDFSEESDINDIK------KELQKNLLDAQKHNSDINLYLNEIANIYNILKlnkikkiiDEVKEYTKEI--- 1374
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 817 QERNQKLTATTQKQEQIINTMTQDLrganeKLAVAEVRAENLKKEKEMLKLSEvRLSQQRESLLAEQRGQNLLLTNlqti 896
Cdd:TIGR01612 1375 EENNKNIKDELDKSEKLIKKIKDDI-----NLEECKSKIESTLDDKDIDECIK-KIKELKNHILSEESNIDTYFKN---- 1444
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 897 qgilERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLN----TKELLKNAQ 972
Cdd:TIGR01612 1445 ----ADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKaiekNKELFEQYK 1520
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 973 KDIATLkqhLNNMEAQLASQSTQRTGQPGDR--DDVDDLKSQL----RQAEEQVNDLKERLKT----STSNVEQYRAMV- 1041
Cdd:TIGR01612 1521 KDVTEL---LNKYSALAIKNKFAKTKKDSEIiiKEIKDAHKKFileaEKSEQKIKEIKKEKFRieddAAKNDKSNKAAId 1597
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1042 --TSLEDSLNKEKQVTEeVHKNIEVRLKESAEFQTQL--------EKKLMEVEKEKQELQD------DKRKAIESMEQQL 1105
Cdd:TIGR01612 1598 iqLSLENFENKFLKISD-IKKKINDCLKETESIEKKIssfsidsqDTELKENGDNLNSLQEfleslkDQKKNIEDKKKEL 1676
|
1050
....*....|....*.
gi 568907995 1106 SELKKTLSTVQNEVQE 1121
Cdd:TIGR01612 1677 DELDSEIEKIEIDVDQ 1692
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1352-1663 |
4.82e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 55.69 E-value: 4.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1352 REEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKS----GMLQAEKKLLE--EDVKRWKAR----NQQLINQQKDP 1421
Cdd:PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETlstlSLRQLESRLAQtlDQLQNAQNDlaeyNSQLVSLQTQP 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1422 D------------TEEYRKLL-----SEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNqNLIQSLredLSKARTEKEG 1484
Cdd:PRK11281 159 EraqaalyansqrLQQIRNLLkggkvGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGN-TQLQDL---LQKQRDYLTA 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1485 IQKDLDAKIIDIQEkvktitqvkKIGRRYKTQFEElKAQQNKAMETSTQSSGD---HQEQHISVQEMQEL------KDTL 1555
Cdd:PRK11281 235 RIQRLEHQLQLLQE---------AINSKRLTLSEK-TVQEAQSQDEAARIQANplvAQELEINLQLSQRLlkatekLNTL 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1556 SQSETKTKSlegQVENLQKTlseketeARSLQEQTVQLQSE--LSRLrqdlqdktteeqLRQQmnektwktlalaKSKIT 1633
Cdd:PRK11281 305 TQQNLRVKN---WLDRLTQS-------ERNIKEQISVLKGSllLSRI------------LYQQ------------QQALP 350
|
330 340 350
....*....|....*....|....*....|
gi 568907995 1634 HLSGVKDqLTKEIEELKQRNGALDQQKDEL 1663
Cdd:PRK11281 351 SADLIEG-LADRIADLRLEQFEINQQRDAL 379
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1440-1713 |
5.64e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 5.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1440 IQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQK--DLDAKIIDIQ------EKVKTITQVKKIGR 1511
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEgyellkEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1512 RYKTQFEELKAQQNKAMETSTQSSGDHQE-QHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQT 1590
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLlEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1591 VQLQSELSRLRQDLQDktTEEQLRQQMNEKtwktlalakskithlsgvkDQLTKEIEELKQRNGALDQQKDELDVRMTAL 1670
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEE--LEREIEEERKRR-------------------DKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568907995 1671 K---SQYEGRISRLERELREHQerhlEQRDEPQEPTNKAPEQQRQI 1713
Cdd:TIGR02169 384 RdelKDYREKLEKLKREINELK----RELDRLQEELQRLSEELADL 425
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1259-1698 |
8.96e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 8.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1259 NEEGKS--------------QEQILEILRFIRREKEIAETRFEVAQVEsLRYRQRVELLERELQELQDSLNVEREKVQVT 1324
Cdd:COG4717 32 NEAGKStllafiramllerlEKEADELFKPQGRKPELNLKELKELEEE-LKEAEEKEEEYAELQEELEELEEELEELEAE 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1325 AKTMAQHEELMKKtetmnvvMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1404
Cdd:COG4717 111 LEELREELEKLEK-------LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1405 KRWKARNQQLINQQKdpdtEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTnNQNLIQSLREDLSK-----AR 1479
Cdd:COG4717 184 EQLSLATEEELQDLA----EELEELQQRLAELEEELEEAQEELEELEEELEQLENELE-AAALEERLKEARLLlliaaAL 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1480 TEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSE 1559
Cdd:COG4717 259 LALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEE 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1560 tkTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQ----------SELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAK 1629
Cdd:COG4717 339 --LLELLDRIEELQELLREAEELEEELQLEELEQEiaallaeagvEDEEELRAALEQAEEYQELKEELEELEEQLEELLG 416
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1630 SKITHLSGV-KDQLTKEIEELKQRNGALDQQKDELDVRMTALksqyEGRISRLER-----ELREHQERHLEQRDE 1698
Cdd:COG4717 417 ELEELLEALdEEELEEELEELEEELEELEEELEELREELAEL----EAELEQLEEdgelaELLQELEELKAELRE 487
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
472-939 |
9.93e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 9.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 472 LYNAYVETQDQLLLEKQENKRINkyLDEIvKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANK 551
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELN--LKEL-KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 552 HSSVLERDNQRMEI--QIKDLSQQIRVLLMELEEargnhvirdeevssadissssevISQHLVSYRNIEELQQQNQRLLF 629
Cdd:COG4717 124 LLQLLPLYQELEALeaELAELPERLEELEERLEE-----------------------LRELEEELEELEAELAELQEELE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 630 ALRELGETREREEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTTGMAIPLQASSLDD 709
Cdd:COG4717 181 ELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLA 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 710 ISLLSTPKRSSTSQ----------------TVSTPAPEPVIDSTEAIEAKAALKQL-QEIFENYKKEKIDSEKLQNEQLE 772
Cdd:COG4717 261 LLGLGGSLLSLILTiagvlflvlgllallfLLLAREKASLGKEAEELQALPALEELeEEELEELLAALGLPPDLSPEELL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 773 KLQEQVTDLRSQNTKIST------QLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANE 846
Cdd:COG4717 341 ELLDRIEELQELLREAEEleeelqLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 847 KLAVAEvrAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnllltnLQTIQGILERSETETkqrlnsQIEKLEHEISHLK 926
Cdd:COG4717 421 LLEALD--EEELEEELEELEEELEELEEELEELREE----------LAELEAELEQLEEDG------ELAELLQELEELK 482
|
490
....*....|...
gi 568907995 927 KKLENEVEQRHTL 939
Cdd:COG4717 483 AELRELAEEWAAL 495
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
747-1705 |
1.24e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 54.29 E-value: 1.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 747 KQLQEIFENYK-KEKIDSEKL-----QNEQLEKLQEQVTDLRSQ-NTKIS---TQLDFASKRYEMLQDNVEGYR------ 810
Cdd:TIGR01612 751 KDLNKILEDFKnKEKELSNKIndyakEKDELNKYKSKISEIKNHyNDQINidnIKDEDAKQNYDKSKEYIKTISikedei 830
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 811 -REITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLA------VAEVRAENLKKEKEMLKLSEVRLSQQRESLlaEQ 883
Cdd:TIGR01612 831 fKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFAeltnkiKAEISDDKLNDYEKKFNDSKSLINEINKSI--EE 908
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 884 RGQNLllTNLQTIQGILE--RSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEI-NL 960
Cdd:TIGR01612 909 EYQNI--NTLKKVDEYIKicENTKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFkDA 986
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 961 HLNTKELLKNAqkdiatLKQHLNNMEAQLASQSTQRTGQPGDRDD--VDDLKSQLRQAEEQVNDLKERLKTSTSNV-EQY 1037
Cdd:TIGR01612 987 SLNDYEAKNNE------LIKYFNDLKANLGKNKENMLYHQFDEKEkaTNDIEQKIEDANKNIPNIEIAIHTSIYNIiDEI 1060
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1038 RAMVTSLEDSLNKEkqVTEEVHKNI--------EVRLKESAEFQTQLEKKLM-EVEKEKQELQDDKRKaIESMEQQLSEL 1108
Cdd:TIGR01612 1061 EKEIGKNIELLNKE--ILEEAEINItnfneikeKLKHYNFDDFGKEENIKYAdEINKIKDDIKNLDQK-IDHHIKALEEI 1137
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1109 KKTLSTVQNEVQEALQR----ASTALSNEQQARRDCQEQAKIAVEAQNKYERE----LMLHAADVEALQAAKEQVSKM-- 1178
Cdd:TIGR01612 1138 KKKSENYIDEIKAQINDledvADKAISNDDPEEIEKKIENIVTKIDKKKNIYDeikkLLNEIAEIEKDKTSLEEVKGInl 1217
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1179 -------TSIRQHLEETTQKAESQLLECKASWEERERVLKD--EVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKda 1249
Cdd:TIGR01612 1218 sygknlgKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKEKspEIENEMGIEMDIKAEMETFNISHDDDKDHHIISKK-- 1295
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1250 vqaplnvslNEEGKS--QEQILEILRFIRREKEIAETRFEVAQ--VESLRYRQRVELLERELQELQDSLNVER-----EK 1320
Cdd:TIGR01612 1296 ---------HDENISdiREKSLKIIEDFSEESDINDIKKELQKnlLDAQKHNSDINLYLNEIANIYNILKLNKikkiiDE 1366
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1321 VQVTAKTMAQHEELMK----KTETMNVVMETNKMLREEKERLE-----QNLQQMQAKVRKLELDILPLQEANAELSEKSG 1391
Cdd:TIGR01612 1367 VKEYTKEIEENNKNIKdeldKSEKLIKKIKDDINLEECKSKIEstlddKDIDECIKKIKELKNHILSEESNIDTYFKNAD 1446
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1392 MLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARsnasltnNQNLIQSL 1471
Cdd:TIGR01612 1447 ENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNAKAIEK-------NKELFEQY 1519
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1472 REDLSkartekegiqkDLDAKIIDIQEKVKtITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEMQEL 1551
Cdd:TIGR01612 1520 KKDVT-----------ELLNKYSALAIKNK-FAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAK 1587
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1552 KDtlsQSETKTKSLEGQVENLQKTL---SEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEqlrqqmNEKTWKTLAla 1628
Cdd:TIGR01612 1588 ND---KSNKAAIDIQLSLENFENKFlkiSDIKKKINDCLKETESIEKKISSFSIDSQDTELKE------NGDNLNSLQ-- 1656
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1629 kskiTHLSGVKDQlTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELREHQERHLEQRDEPQEPTNK 1705
Cdd:TIGR01612 1657 ----EFLESLKDQ-KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIANKEEIESIKELIEPTIE 1728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1220-1539 |
1.40e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 1.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1220 RCEDLEKQnrlLHDQIEKLSdkvvtsmKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQR 1299
Cdd:COG1196 190 RLEDILGE---LERQLEPLE-------RQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1300 VELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPL 1379
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1380 QEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKL---------LSEKEIHTKRIQQLNEEVGRL 1450
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLealraaaelAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1451 KAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMET 1530
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
....*....
gi 568907995 1531 STQSSGDHQ 1539
Cdd:COG1196 500 EADYEGFLE 508
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-413 |
1.41e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 1.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 99 LEKFLAEQQSEIDCLKGRHEKFKVESEQQYFEIEKRLSQSQERLVTETREcqnLRLELEKLNNQVKvltEKTKELETAQD 178
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGE---LEAEIASLERSIA---EKERELEDAEE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 179 RNLGIQSQFTRAKEELEAEKRDLirtnERLSQEVEYLTEDVKRLNEKLkesNTTKGELQLKLDELQASDVAVKYREKRLE 258
Cdd:TIGR02169 323 RLAKLEAEIDKLLAEIEELEREI----EEERKRRDKLTEEYAELKEEL---EDLRAELEEVDKEFAETRDELKDYREKLE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 259 QEKELLHnqnswlntELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMnglktsnEHLQKHVEDLLTKLKEA 338
Cdd:TIGR02169 396 KLKREIN--------ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK-------EDKALEIKKQEWKLEQL 460
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 339 KEQQASMEEKFhnelnahiklsnlyksaaddsEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQME 413
Cdd:TIGR02169 461 AADLSKYEQEL---------------------YDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEE 514
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
997-1609 |
1.51e-06 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 53.75 E-value: 1.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 997 TGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYramvTSLEDSLNKEKQVTEEVHKNIEvrlkESAEFQTQL 1076
Cdd:PRK01156 145 SGDPAQRKKILDEILEINSLERNYDKLKDVIDMLRAEISNI----DYLEEKLKSSNLELENIKKQIA----DDEKSHSIT 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1077 EKKLMEVEKEKQELQDDKRKAIESMeQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYER 1156
Cdd:PRK01156 217 LKEIERLSIEYNNAMDDYNNLKSAL-NELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRN 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1157 ELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESqlLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIE 1236
Cdd:PRK01156 296 YINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSV--LQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1237 KLSDKVVTSMKDavQAPLNVSLNEEGKSQEQILEILRfirreKEIAETRFEVAQVESlryrqrvellerelqeLQDSLNV 1316
Cdd:PRK01156 374 SLKKKIEEYSKN--IERMSAFISEILKIQEIDPDAIK-----KELNEINVKLQDISS----------------KVSSLNQ 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1317 ERekvqvtaKTMAQHEELMKKTETM----NVVMETNKMLREEKER-----LEQNLQQMQAKVRKLELDILPLQEanaels 1387
Cdd:PRK01156 431 RI-------RALRENLDELSRNMEMlngqSVCPVCGTTLGEEKSNhiinhYNEKKSRLEEKIREIEIEVKDIDE------ 497
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1388 EKSGMLQAEKKLLEEDVKRWKARNQQLinQQKDPDTEEYRKLLSE-KEIHTKrIQQLNEEVGRLKAEIARSNASLTNNQN 1466
Cdd:PRK01156 498 KIVDLKKRKEYLESEEINKSINEYNKI--ESARADLEDIKIKINElKDKHDK-YEEIKNRYKSLKLEDLDSKRTSWLNAL 574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1467 LIQSLReDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEEL---------KAQQNKAMETSTQSSGD 1537
Cdd:PRK01156 575 AVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEannlnnkynEIQENKILIEKLRGKID 653
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1538 HQEQHIS-----VQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTT 1609
Cdd:PRK01156 654 NYKKQIAeidsiIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK 730
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
161-1069 |
1.55e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 1.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 161 NQVKVLTEKTKELE-TAQDRNLGIQSQFTRAKEELEAEKRDLIRTNE-RLSQEVEYLTEDVKRLNEKLKESNTTKGELQL 238
Cdd:PTZ00121 1067 GQDEGLKPSYKDFDfDAKEDNRADEATEEAFGKAEEAKKTETGKAEEaRKAEEAKKKAEDARKAEEARKAEDARKAEEAR 1146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 239 KLDELQASDVAVKYREKRLEQEKELLHNQNswlNTELKTKTDELLALGREKGNEILElKCNLENKKEEVLRLEEQMNGLK 318
Cdd:PTZ00121 1147 KAEDAKRVEIARKAEDARKAEEARKAEDAK---KAEAARKAEEVRKAEELRKAEDAR-KAEAARKAEEERKAEEARKAED 1222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 319 TSNEHLQKHVEDLLTKLKEAKEQqasmEEKFHNELNAHIKLSNLYKSAADDSEAKSNElTRAVDELHKL--LKEAGEANK 396
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKA----EEERNNEEIRKFEEARMAHFARRQAAIKAEE-ARKADELKKAeeKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 397 TiqDHLLQVEESKDQMEKEmlEKIGKLEKELENANDLLSATKRKG--AILSEEELAAMSPTAAAVAKIVKPGMKLTELYN 474
Cdd:PTZ00121 1298 A--EEKKKADEAKKKAEEA--KKADEAKKKAEEAKKKADAAKKKAeeAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKK 1373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 475 AYVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKavASLSAKLEQAMKEIQRLQEDTDKANKHSS 554
Cdd:PTZ00121 1374 EEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKADEAKK 1451
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 555 VLERDNQRMEIQIKdlsqqirvllmeLEEARGNHVIR---DEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFAl 631
Cdd:PTZ00121 1452 KAEEAKKAEEAKKK------------AEEAKKADEAKkkaEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA- 1518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 632 rELGETREREEQETTSSKIAELQHKLENSLA-ELEQLRESRQHQMQLVDSIVRQRDMYRILLSQTTGMAIPLQASSLDDI 710
Cdd:PTZ00121 1519 -EEAKKADEAKKAEEAKKADEAKKAEEKKKAdELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEV 1597
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 711 SLLSTPKRSSTSQTVSTpAPEPVIDSTEAIEAKAALKQLQEIfenykKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKIST 790
Cdd:PTZ00121 1598 MKLYEEEKKMKAEEAKK-AEEAKIKAEELKKAEEEKKKVEQL-----KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 791 QldfASKRYEMLQDNVEGYRREitslQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR---AENLKKEKEMLKL 867
Cdd:PTZ00121 1672 E---DKKKAEEAKKAEEDEKKA----AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENkikAEEAKKEAEEDKK 1744
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 868 SEVRLSQQRESllaEQRGQNLLLTNLQTIQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQL 947
Cdd:PTZ00121 1745 KAEEAKKDEEE---KKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVI 1821
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 948 LDTKRQLDTEINLHLNTKELLKNAQKDIatlKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERL 1027
Cdd:PTZ00121 1822 NDSKEMEDSAIKEVADSKNMQLEEADAF---EKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDI 1898
|
890 900 910 920
....*....|....*....|....*....|....*....|..
gi 568907995 1028 KTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLKES 1069
Cdd:PTZ00121 1899 EREIPNNNMAGKNNDIIDDKLDKDEYIKRDAEETREEIIKIS 1940
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
888-1129 |
1.72e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 888 LLLTNLQTIQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTEINLhlnTKEL 967
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIA-ALARRIRALEQELAA---LEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 968 LKNAQKDIATLKQHLNNMEAQLASQ--STQRTGQPG------DRDDVDDLKSQLRQAEEQVNDLKERLKTstsnVEQYRA 1039
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELlrALYRLGRQPplalllSPEDFLDAVRRLQYLKYLAPARREQAEE----LRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1040 MVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQddkrKAIESMEQQLSELKKTLSTVQNEV 1119
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEA 236
|
250
....*....|
gi 568907995 1120 QEALQRASTA 1129
Cdd:COG4942 237 AAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
93-347 |
2.10e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 93 KSTQNKLEKFLAEQQSEIDCLKGR---HEKFKVESEQQYFEIEKRLSQSQerlvtetreCQNLRLELEKLNNQVKVLTEK 169
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARieeLEEDLHKLEEALNDLEARLSHSR---------IPEIQAELSKLEEEVSRIEAR 813
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 170 TKELETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKES-------NTTKGELQLKLDE 242
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELeaalrdlESRLGDLKKERDE 893
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 243 LQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKGNEILELKC--NLENKKEEVLRLEEQMNGLKTS 320
Cdd:TIGR02169 894 LEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelSLEDVQAELQRVEEEIRALEPV 973
|
250 260
....*....|....*....|....*..
gi 568907995 321 NEHLQKHVEDLLTKLKEAKEQQASMEE 347
Cdd:TIGR02169 974 NMLAIQEYEEVLKRLDELKEKRAKLEE 1000
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1077-1701 |
2.35e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 2.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1077 EKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALqrastalsneqqarrdcqEQAKIAVEAQNKYER 1156
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL------------------EEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1157 ELMlhaADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSKsvsRCEDLEKQNRLLHDQIE 1236
Cdd:pfam02463 237 ERI---DLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAK---EEEELKSELLKLERRKV 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1237 KLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNV 1316
Cdd:pfam02463 311 DDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1317 EREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAE 1396
Cdd:pfam02463 391 KLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKS 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1397 KKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNL----IQSLR 1472
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYkvaiSTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1473 EDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIG----RRYKTQFEELKAQQNKAMETSTQSSGDHQEQHISVQEM 1548
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlplkSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1549 QELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALA 1628
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKE 710
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568907995 1629 KSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRM-TALKSQYEGRISRLERELREHQERHLEQRDEPQE 1701
Cdd:pfam02463 711 ELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEeEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTE 784
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
87-426 |
2.44e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 2.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 87 ELNKLpKSTQNKLEKFLAEQQSEIDCLKGRHEKFKVESEQqyfeIEKRLSQSQERlvtetrecqnlrleLEKLNNQVKVL 166
Cdd:TIGR02169 689 ELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQ----LEQEEEKLKER--------------LEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 167 TEKTKELETAQDRNLGIQSQFTRAKEELEAEKRDLirtnerlsqEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAS 246
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDL---------EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQK 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 247 DVAVKYREKRLEQEKELLHNQNSWLNT----------ELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQM-- 314
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDLKEqiksiekeieNLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLre 900
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 315 -----NGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLyksaaDDSEAKSNELTRAVDELHKLLK 389
Cdd:TIGR02169 901 lerkiEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSL-----EDVQAELQRVEEEIRALEPVNM 975
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568907995 390 EAGEANKTIQDHLLQVEESKDQMEKE---MLEKIGKLEKE 426
Cdd:TIGR02169 976 LAIQEYEEVLKRLDELKEKRAKLEEErkaILERIEEYEKK 1015
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
217-659 |
2.76e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 2.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 217 EDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREK------G 290
Cdd:PRK03918 158 DDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkeleelK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 291 NEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE-----KFHNELNAhiKLSNLYKS 365
Cdd:PRK03918 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsEFYEEYLD--ELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 366 AADDSEaKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKemLEKIGKLEKELENandllsaTKRKGAILS 445
Cdd:PRK03918 316 LSRLEE-EINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL--YEEAKAKKEELER-------LKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 446 EEELAAMsptaaaVAKIVKPGMKLTELYNAYVETQDQLlleKQENKRINKYLDEIvKEVEAKAPILKRQREEYERAQkAV 525
Cdd:PRK03918 386 PEKLEKE------LEELEKAKEEIEEEISKITARIGEL---KKEIKELKKAIEEL-KKAKGKCPVCGRELTEEHRKE-LL 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 526 ASLSAKLEQAMKEIQRLQEDTDKANKHSSVLE--RDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSS 603
Cdd:PRK03918 455 EEYTAELKRIEKELKEIEEKERKLRKELRELEkvLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL 534
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 604 SEVISQHLVSYRNIEELQQQNQRLLFALRELGETRereeqettsSKIAELQHKLEN 659
Cdd:PRK03918 535 IKLKGEIKSLKKELEKLEELKKKLAELEKKLDELE---------EELAELLKELEE 581
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
741-1196 |
3.22e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.61 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 741 EAKAALKQLQEIFENYK--KEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQ--------LDFASKRYEMLQDNVEGYR 810
Cdd:COG4913 222 DTFEAADALVEHFDDLEraHEALEDAREQIELLEPIRELAERYAAARERLAELeylraalrLWFAQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 811 REITSLQERNQKLTATTQKQEQIINTMTQDLRGA-NEKLAVAEVRAENLKKEKEMLKLSEVRLSQQ-----------RES 878
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALlaalglplpasAEE 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 879 LLAEQRGQNLLLTNLQTIQGILERSETETKQR---LNSQIEKLEHEISHLKK---------------------------- 927
Cdd:COG4913 382 FAALRAEAAALLEALEEELEALEEALAEAEAAlrdLRRELRELEAEIASLERrksniparllalrdalaealgldeaelp 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 928 --------KLENE------------------VEQRHT-----------LTRNLDVQLLDTKRQLDTEINLHLNT--KELL 968
Cdd:COG4913 462 fvgelievRPEEErwrgaiervlggfaltllVPPEHYaaalrwvnrlhLRGRLVYERVRTGLPDPERPRLDPDSlaGKLD 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 969 KNAQKDIATLKQHLNNM--------EAQL--ASQSTQRTGQ---PGDR---DDVDDLKSQL---RQAEEQVNDLKERLKT 1029
Cdd:COG4913 542 FKPHPFRAWLEAELGRRfdyvcvdsPEELrrHPRAITRAGQvkgNGTRhekDDRRRIRSRYvlgFDNRAKLAALEAELAE 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1030 STSNVEQYRAMVTSLEDSLNKEKQVtEEVHKNIEVRLKESAEFQtQLEKKLMEVEKEKQELQDDKrKAIESMEQQLSELK 1109
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQER-REALQRLAEYSWDEIDVA-SAEREIAELEAELERLDASS-DDLAALEEQLEELE 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1110 KTLSTVQNEVqEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKmtSIRQHLEETT 1189
Cdd:COG4913 699 AELEELEEEL-DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVER--ELRENLEERI 775
|
....*..
gi 568907995 1190 QKAESQL 1196
Cdd:COG4913 776 DALRARL 782
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
125-595 |
3.65e-06 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 52.77 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 125 EQQYFEIEKRLSQSQERlvTETRECQNLRLELEKLNNQVKVLTEKTKeletaQDRNLGIQSQFTRAKEELEAEKRDLIRT 204
Cdd:COG5022 793 WRLFIKLQPLLSLLGSR--KEYRSYLACIIKLQKTIKREKKLRETEE-----VEFSLKAEVLIQKFGRSLKAKKRFSLLK 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 205 NERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQAsdvavKYREKRLEQEKELLhnqnswLNTELKTKTDELLA 284
Cdd:COG5022 866 KETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELES-----EIIELKKSLSSDLI------ENLEFKTELIARLK 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 285 LGREKGNEILELKCNLEnKKEEVLRLEEQMNGLKTSNEHLqkhvEDLLTKLKEAKEQQASMEEKFHN---ELNAHIKLsn 361
Cdd:COG5022 935 KLLNNIDLEEGPSIEYV-KLPELNKLHEVESKLKETSEEY----EDLLKKSTILVREGNKANSELKNfkkELAELSKQ-- 1007
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 362 lyKSAADDSEAKSNELTRAVDELH---KLLKEAGEA-------NKTIQDHLLQVEESKDQME-----KEMLEKIGKLEKE 426
Cdd:COG5022 1008 --YGALQESTKQLKELPVEVAELQsasKIISSESTElsilkplQKLKGLLLLENNQLQARYKalklrRENSLLDDKQLYQ 1085
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 427 LENANDLLSATKRKGAILSEEELAAMSP-TAAAVAKIVKPG-----MKLTELYNAYVETQDQLLLEKQENKRINKYLDEI 500
Cdd:COG5022 1086 LESTENLLKTINVKDLEVTNRNLVKPANvLQFIVAQMIKLNllqeiSKFLSQLVNTLEPVFQKLSVLQLELDGLFWEANL 1165
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 501 VKEVEAKAPILKRQREEYEraqkaVASLSAKLEQAMKEIQRLQEDTD-KANKHSSVLERDnqrmeIQIKDLSQQIRVLLM 579
Cdd:COG5022 1166 EALPSPPPFAALSEKRLYQ-----SALYDEKSKLSSSEVNDLKNELIaLFSKIFSGWPRG-----DKLKKLISEGWVPTE 1235
|
490
....*....|....*.
gi 568907995 580 ELEEARGNHVIRDEEV 595
Cdd:COG5022 1236 YSTSLKGFNNLNKKFD 1251
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
734-1499 |
3.66e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 52.42 E-value: 3.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 734 IDSTEAIEAKAALKQLQEIFEN---YKKEKIDSEKLQNEQ-----LEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDN 805
Cdd:pfam05483 35 IDSDPAFQKLNFLPMLEQVANSgdcHYQEGLKDSDFENSEglsrlYSKLYKEAEKIKKWKVSIEAELKQKENKLQENRKI 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 806 VEGYRREITSLQERNQKLTAttqKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRG 885
Cdd:pfam05483 115 IEAQRKAIQELQFENEKVSL---KLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNN 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 886 QNLLLTNLQTIQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTL--------TRNLDVQLL-----DTKR 952
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLliqitekeNKMKDLTFLleesrDKAN 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 953 QLDTEINLHlntKELLKNAQKDIATLKQHLNNMEAQLA-SQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTST 1031
Cdd:pfam05483 272 QLEEKTKLQ---DENLKELIEKKDHLTKELEDIKMSLQrSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHS 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1032 SNVEQYRAMVTSLEDSLNKEKQVTEEVhknievrlkesaefQTQLEKKLMEVEKEKQELQdDKRKAIESMEQQLSELKKT 1111
Cdd:pfam05483 349 FVVTEFEATTCSLEELLRTEQQRLEKN--------------EDQLKIITMELQKKSSELE-EMTKFKNNKEVELEELKKI 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1112 LSTVQNEVQEALQrastalsneqqarrdcqeQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQK 1191
Cdd:pfam05483 414 LAEDEKLLDEKKQ------------------FEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVED 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1192 AESQLleckasweERERVLKDEVSksvSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDavqaplnvsLNEEGKSQEQILEI 1271
Cdd:pfam05483 476 LKTEL--------EKEKLKNIELT---AHCDKLLLENKELTQEASDMTLELKKHQED---------IINCKKQEERMLKQ 535
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1272 LRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQH-----EELMKKTETMNVVME 1346
Cdd:pfam05483 536 IENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKcnnlkKQIENKNKNIEELHQ 615
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1347 TNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEE----DVKRWKARNQQLINQQKDPD 1422
Cdd:pfam05483 616 ENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEklleEVEKAKAIADEAVKLQKEID 695
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1423 TEEYRKL-----LSEKEIHT--KRIQQLNEEVGRLKAEIARSNA-------SLTNNQNLIQSLREDLSKARTEKEGIQKD 1488
Cdd:pfam05483 696 KRCQHKIaemvaLMEKHKHQydKIIEERDSELGLYKNKEQEQSSakaaleiELSNIKAELLSLKKQLEIEKEEKEKLKME 775
|
810
....*....|.
gi 568907995 1489 LDAKIIDIQEK 1499
Cdd:pfam05483 776 AKENTAILKDK 786
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
815-1533 |
3.97e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 3.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 815 SLQERNQKLTATTQKQEQIINTMTQDLrgaNEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTnlq 894
Cdd:TIGR00618 191 SLHGKAELLTLRSQLLTLCTPCMPDTY---HERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQ--- 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 895 tiqgilERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQL-DTEINLHLNTKELLKNAQK 973
Cdd:TIGR00618 265 ------LRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSkMRSRAKLLMKRAAHVKQQS 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 974 DIATLKQHLNNMEAQ---LASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNK 1050
Cdd:TIGR00618 339 SIEEQRRLLQTLHSQeihIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1051 EK--QVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRAST 1128
Cdd:TIGR00618 419 FRdlQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLE 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1129 ALSNEQQARRDCQEQAKIAVEA------QNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKAS 1202
Cdd:TIGR00618 499 LQEEPCPLCGSCIHPNPARQDIdnpgplTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQC 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1203 WEERE------RVLKDEVSKSVSRCEDLEKQNR-LLHDQIEKLSDKvvtsmkdavQAPLNVSLNEEGKSQEQILEILRFI 1275
Cdd:TIGR00618 579 DNRSKedipnlQNITVRLQDLTEKLSEAEDMLAcEQHALLRKLQPE---------QDLQDVRLHLQQCSQELALKLTALH 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1276 RREKEIAETRFEVAqveSLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETmnvVMETNKMLREEK 1355
Cdd:TIGR00618 650 ALQLTLTQERVREH---ALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET---HIEEYDREFNEI 723
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1356 ERLEQNLQQMqakvrkleldiLPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDpdtEEYRKLLSEKEI 1435
Cdd:TIGR00618 724 ENASSSLGSD-----------LAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG---AELSHLAAEIQF 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1436 HTKRIQQLNEEVGRLKAEIArsnasltnnqnliQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVkkigRRYKT 1515
Cdd:TIGR00618 790 FNRLREEDTHLLKTLEAEIG-------------QEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEI----THQLL 852
|
730
....*....|....*...
gi 568907995 1516 QFEELKAQQNKAMETSTQ 1533
Cdd:TIGR00618 853 KYEECSKQLAQLTQEQAK 870
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
903-1138 |
4.32e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.69 E-value: 4.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 903 SETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLdvqlldtkRQLDTEINlhlNTKELLKNAQKDIATLKQHL 982
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQL--------AALERRIA---ALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 983 NNMEAQLASQSTQRTGQpgdrddVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQ---YRAMVTSLEDSLNKEKQVTEEVH 1059
Cdd:COG4942 86 AELEKEIAELRAELEAQ------KEELAELLRALYRLGRQPPLALLLSPEDFLDavrRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1060 KNIEVRLKESAEFQTQLEKKLMEVEKEKQELQ---DDKRKAIESMEQQLSELKKTLSTVQNEvQEALQRASTALSNEQQA 1136
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEalkAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAA 238
|
..
gi 568907995 1137 RR 1138
Cdd:COG4942 239 AA 240
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
206-1031 |
5.73e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 5.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 206 ERLSQEVEYLTEDVKRLNEKLKESNTTKG-----------ELQLKLDELQASDVAVKYREKRLEQEKELLHNQnswlnte 274
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNESNELHEkqkfylrqsviDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQ------- 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 275 LKTKTDELLAlgrekgneileLKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQasmeekfhneLN 354
Cdd:pfam15921 147 LQNTVHELEA-----------AKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKK----------IY 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 355 AHIKLSNLYKSAADDSeaksneltravdeLHKLLKEAGEANKTIQDHLLQVEeskDQMEKEMLEKIGKLEKELENANDll 434
Cdd:pfam15921 206 EHDSMSTMHFRSLGSA-------------ISKILRELDTEISYLKGRIFPVE---DQLEALKSESQNKIELLLQQHQD-- 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 435 satkRKGAILSEEELAAMSPTAAAVAKIVKPGmkltelynayvETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQ 514
Cdd:pfam15921 268 ----RIEQLISEHEVEITGLTEKASSARSQAN-----------SIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSE 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 515 REEYERA-QKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMeiqIKDLSQQIRVLLMELEEargNHVIRDE 593
Cdd:pfam15921 333 LREAKRMyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKL---LADLHKREKELSLEKEQ---NKRLWDR 406
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 594 EVssadissSSEVISQHLvsYRNIEELQQQNQRLLFALRELGetrereeqettsskiAELQHKLENSLAELEQLRESRQH 673
Cdd:pfam15921 407 DT-------GNSITIDHL--RRELDDRNMEVQRLEALLKAMK---------------SECQGQMERQMAAIQGKNESLEK 462
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 674 QMQLVDSIVRQRDMYRILLSQTTGMAIPLQASslddisllstpKRSSTSQTVSTPAPEPVIDSTEAIEAKAALKQlqeif 753
Cdd:pfam15921 463 VSSLTAQLESTKEMLRKVVEELTAKKMTLESS-----------ERTVSDLTASLQEKERAIEATNAEITKLRSRV----- 526
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 754 eNYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQI 833
Cdd:pfam15921 527 -DLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLE 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 834 INTMTQDLRGANEKLAVAEVRAENLKKEKEML------KLSEVR-LSQQRESLLAEQRGQNLLLTNLQTIQGILERSETE 906
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagseRLRAVKdIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRN 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 907 TKQRLNSQIEKLEHEISHLKKKLEnevEQRHTLTR-------------NLDVQLLDTKRQLDTEINLHLNTKELLKNAQK 973
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELE---QTRNTLKSmegsdghamkvamGMQKQITAKRGQIDALQSKIQFLEEAMTNANK 762
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 568907995 974 DIATLKQHLNNMEAQLASQSTQRTGQPGdrdDVDDLKSQLRQAEEQVNDLKERLKTST 1031
Cdd:pfam15921 763 EKHFLKEEKNKLSQELSTVATEKNKMAG---ELEVLRSQERRLKEKVANMEVALDKAS 817
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
737-1117 |
6.54e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 6.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 737 TEAIEAKAALKQLQEIFENYKKEKIDSEklqnEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSL 816
Cdd:PRK02224 356 ERAEELREEAAELESELEEAREAVEDRR----EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 817 QERNQKLTATTQKQEQIIN-----TMTQDLRGAN--EKLAVAEVRAENLKKEKEMLKLSEVRLSQ---QRESLLAEQRGQ 886
Cdd:PRK02224 432 EATLRTARERVEEAEALLEagkcpECGQPVEGSPhvETIEEDRERVEELEAELEDLEEEVEEVEErleRAEDLVEAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 887 NLLLTNLQTIQGILERSET------ETKQRLNSQIEKLEHEiSHLKKKLENEVEQRHTLTRNlDVQLLDTKRQLDTEINL 960
Cdd:PRK02224 512 ERLEERREDLEELIAERREtieekrERAEELRERAAELEAE-AEEKREAAAEAEEEAEEARE-EVAELNSKLAELKERIE 589
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 961 HLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRtgqpgdRDDVDDLKSQLRQAEEQVNDlkerlktstSNVEQYRAm 1040
Cdd:PRK02224 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDER------RERLAEKRERKRELEAEFDE---------ARIEEARE- 653
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568907995 1041 vtsledslnkEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQD--DKRKAIESMEQQLSELKKTLSTVQN 1117
Cdd:PRK02224 654 ----------DKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEElrERREALENRVEALEALYDEAEELES 722
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
92-673 |
6.65e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 6.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 92 PKSTQNKLEKFLAEQQSEIDclkgRHEKFKVESEQQYFEIEKRLSQSQERlvtetrecqnlRLELEKLNNQVKVLTEKTK 171
Cdd:PRK02224 204 LHERLNGLESELAELDEEIE----RYEEQREQARETRDEADEVLEEHEER-----------REELETLEAEIEDLRETIA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 172 ELETAQDRNLGIQSQFTRAKEELEAEKRDLIRT-------NERLSQEVEYLTEDVKRLNEKLKESNTTKGElqlkldelq 244
Cdd:PRK02224 269 ETEREREELAEEVRDLRERLEELEEERDDLLAEaglddadAEAVEARREELEDRDEELRDRLEECRVAAQA--------- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 245 ASDVAVKYREKRLEQEKEllhnqnswlNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHL 324
Cdd:PRK02224 340 HNEEAESLREDADDLEER---------AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNA 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 325 QKHVEDLLTKLKEAKEQQASMEEKFHNELNAhiklsnLYKSAADDSEAKSNELTRAVDELHKL--LKEAGEANKTIQDHL 402
Cdd:PRK02224 411 EDFLEELREERDELREREAELEATLRTARER------VEEAEALLEAGKCPECGQPVEGSPHVetIEEDRERVEELEAEL 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 403 LQVEESKDQMEK--EMLEKIGKLEKELE----NANDLLSATKRKGAILSEEELAAMSPTAAAvakivkpgmklTELYNAY 476
Cdd:PRK02224 485 EDLEEEVEEVEErlERAEDLVEAEDRIErleeRREDLEELIAERRETIEEKRERAEELRERA-----------AELEAEA 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 477 VETQD--QLLLEKQENKRinkyldEIVKEVEAKAPILKRQREEYERaqkaVASLSAKLEQAMKEIQRLQEdtdkanKHSS 554
Cdd:PRK02224 554 EEKREaaAEAEEEAEEAR------EEVAELNSKLAELKERIESLER----IRTLLAAIADAEDEIERLRE------KREA 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 555 VLERDNQRMEiQIKDLSQQIRVLLMELEEARgnhvirdeevssadissssevisqhlvsyrnIEELQQQNQRLLFALREL 634
Cdd:PRK02224 618 LAELNDERRE-RLAEKRERKRELEAEFDEAR-------------------------------IEEAREDKERAEEYLEQV 665
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568907995 635 getreREEQETTSSKIAELQHK---LENSLAELEQLRESRQH 673
Cdd:PRK02224 666 -----EEKLDELREERDDLQAEigaVENELEELEELRERREA 702
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
780-1118 |
7.07e-06 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 51.83 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 780 DLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKltATTQKQEQIINTMTQDLRGANEKLAVAEVRAENL- 858
Cdd:PLN02939 57 KQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNR--ASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLv 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 859 ----KKEKEMLKLSEVRLS--QQRESLLAE----QRGQNLLLTNLQTIQgilERSETETKQRLN-----SQIEKLEHEIS 923
Cdd:PLN02939 135 gmiqNAEKNILLLNQARLQalEDLEKILTEkealQGKINILEMRLSETD---ARIKLAAQEKIHveileEQLEKLRNELL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 924 HlkkKLENEVEQRHTLTRNLD------VQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQL-ASQStqr 996
Cdd:PLN02939 212 I---RGATEGLCVHSLSKELDvlkeenMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFiVAQE--- 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 997 tgqpgdrddvDDLKSQLRQAE---EQVNDLKERLKTSTSNVEQYrAMVTSLEDSLNKEKQVTEEVHKNIEVRlKESAEFQ 1073
Cdd:PLN02939 286 ----------DVSKLSPLQYDcwwEKVENLQDLLDRATNQVEKA-ALVLDQNQDLRDKVDKLEASLKEANVS-KFSSYKV 353
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568907995 1074 TQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNE 1118
Cdd:PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEE 398
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
899-1131 |
7.94e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 7.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 899 ILERSETETkqrlnsQIEKLEHEISHLK---KKLENEVEQRHTLTR--------NLDVQLLDTKRQLDTEINLHLNTKEL 967
Cdd:COG4913 217 MLEEPDTFE------AADALVEHFDDLErahEALEDAREQIELLEPirelaeryAAARERLAELEYLRAALRLWFAQRRL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 968 LKnAQKDIATLKQHLNNMEAQLASQSTQRTGQpgdRDDVDDLKSQLRQA--------EEQVNDLKERLKTSTSNVEQYRA 1039
Cdd:COG4913 291 EL-LEAELEELRAELARLEAELERLEARLDAL---REELDELEAQIRGNggdrleqlEREIERLERELEERERRRARLEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1040 MVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAiesmEQQLSELKKTLSTVQNEV 1119
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELREL----EAEIASLERRKSNIPARL 442
|
250
....*....|..
gi 568907995 1120 QEALQRASTALS 1131
Cdd:COG4913 443 LALRDALAEALG 454
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
848-1089 |
8.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 848 LAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGILERsetetkqrLNSQIEKLEHEISHLKK 927
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA--------LARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 928 KLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVD 1007
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1008 DLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEvhknievRLKESAEFQTQLEKKLMEVEKEK 1087
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAA-------ELAELQQEAEELEALIARLEAEA 236
|
..
gi 568907995 1088 QE 1089
Cdd:COG4942 237 AA 238
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
123-348 |
8.67e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 8.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 123 ESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQDRnlgIQSQFTRAKEELEAEKRDLI 202
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA---LEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 203 RTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLHNqnswLNTELKTKTDEL 282
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA----LRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 283 LALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEK 348
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
816-1028 |
8.71e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 8.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 816 LQERNQKLTATTQKQEQIINTMTQDLRganEKLAVAEVRAENLKKEKEMLKLSEV------RLSQQRESLLAEQRGQNLL 889
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELR---KELEEAEAALEEFRQKNGLVDLSEEaklllqQLSELESQLAEARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 890 LTNLQTIQGILERSETETKQRLNS-QIEKLEHEISHLKKKLENEVEQ---RHTLTRNLDVQLLDTKRQLDTEInlhlntK 965
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELAELSARytpNHPDVIALRAQIAALRAQLQQEA------Q 312
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 966 ELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERLK 1028
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLE 375
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
925-1371 |
8.99e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 925 LKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLAsQSTQRTGQPGDRD 1004
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELE-ELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1005 DVDDLKSQLRQAEEQVNDLKERLktstsnveqyramvtsleDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVE 1084
Cdd:COG4717 126 QLLPLYQELEALEAELAELPERL------------------EELEERLEELRELEEELEELEAELAELQEELEELLEQLS 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1085 KEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVqEALQRASTALSNEQQARRDCQEQAK-----------IAVEAQNK 1153
Cdd:COG4717 188 LATEEELQDLAEELEELQQRLAELEEELEEAQEEL-EELEEELEQLENELEAAALEERLKEarlllliaaalLALLGLGG 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1154 YERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERE-----RVLKDEVSKSVSRCEDLEKQN 1228
Cdd:COG4717 267 SLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEleellAALGLPPDLSPEELLELLDRI 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1229 RLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEG-KSQEQILEILRFIRREKEIAETRFEV-AQVESLRYRQRVELLERE 1306
Cdd:COG4717 347 EELQELLREAEELEEELQLEELEQEIAALLAEAGvEDEEELRAALEQAEEYQELKEELEELeEQLEELLGELEELLEALD 426
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1307 LQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRK 1371
Cdd:COG4717 427 EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAEE 491
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
889-1526 |
9.24e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.17 E-value: 9.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 889 LLTNLQTIQGILERSETETKQRLNSQIEKLEHeishlKKKLENEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELL 968
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEK-----INNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 969 KNAQKDIATLKQHLNNMEAQLASqstqrtgqpgDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSL 1048
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKE----------NKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEK 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1049 NKEKQVTEEVHKNIEVR------LKESAEFQTQLEKKLMEVEKEKQELQDDkrkaIESMEQQLSELKKTLSTVQNEVQEa 1122
Cdd:TIGR04523 183 LNIQKNIDKIKNKLLKLelllsnLKKKIQKNKSLESQISELKKQNNQLKDN----IEKKQQEINEKTTEISNTQTQLNQ- 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1123 lqrastaLSNEQQARRDCQEQAKIAVEAQNK----YERELMLHAADVEALQAAKEQV--SKMTSIRQHLEETTQKAESQL 1196
Cdd:TIGR04523 258 -------LKDEQNKIKKQLSEKQKELEQNNKkikeLEKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLEEIQNQI 330
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1197 LECKASWEErervLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDavqaplnvslNEEGKSQEQILEIlrfir 1276
Cdd:TIGR04523 331 SQNNKIISQ----LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----------NQSYKQEIKNLES----- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1277 rEKEIAETRFEVAQVESLRYRQRVELLERELQElqdslnVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKE 1356
Cdd:TIGR04523 392 -QINDLESKIQNQEKLNQQKDEQIKKLQQEKEL------LEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1357 RLEQNLQQMQAKVRKLELDilpLQEANAELSEKSG---MLQAEKKLLEEDVKRWKARNQQLINQQKdpdteeyrKLLSEK 1433
Cdd:TIGR04523 465 SLETQLKVLSRSINKIKQN---LEQKQKELKSKEKelkKLNEEKKELEEKVKDLTKKISSLKEKIE--------KLESEK 533
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1434 EIHTKRIQQLNEEVGRLKAEIARSN--ASLTNNQNLIQSLRED---LSKARTEKEGIQKDLDAKIID----IQEKVKTIT 1504
Cdd:TIGR04523 534 KEKESKISDLEDELNKDDFELKKENleKEIDEKNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDlikeIEEKEKKIS 613
|
650 660
....*....|....*....|..
gi 568907995 1505 QVKKIGRRYKTQFEELKAQQNK 1526
Cdd:TIGR04523 614 SLEKELEKAKKENEKLSSIIKN 635
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
219-669 |
9.71e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 9.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 219 VKRLNEKLKESNTTKGEL-QLKLDELQASDVAVKYREKRLEQEKELLHNQNSwLNTELKTKTDELLALGREKGNeiLELK 297
Cdd:COG4717 48 LERLEKEADELFKPQGRKpELNLKELKELEEELKEAEEKEEEYAELQEELEE-LEEELEELEAELEELREELEK--LEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 298 CNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKfHNELNAHIKLSNLYKsaaddsEAKSNEL 377
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAEL-QEELEELLEQLSLAT------EEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 378 TRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEMlEKIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAA 457
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENEL-EAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 458 AVAKIV---------KPGMKLTELYNAYVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASL 528
Cdd:COG4717 277 GVLFLVlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 529 SAKLEQAmkEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHvirDEEVSSADISSSSEVIS 608
Cdd:COG4717 357 EELEEEL--QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEL---LGELEELLEALDEEELE 431
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568907995 609 QHLVSYRniEELQQQNQRLLFALRELGETREREEQETTSSKIAELQHKLENSLAELEQLRE 669
Cdd:COG4717 432 EELEELE--EELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1050-1724 |
1.01e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 1.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1050 KEKQVTEEVHKNievrLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTA 1129
Cdd:pfam02463 166 RLKRKKKEALKK----LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1130 LSNEQQARRDCQEQAKIAVEAqnkyERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERV 1209
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEK----EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1210 LKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVa 1289
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE- 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1290 qvesLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKV 1369
Cdd:pfam02463 397 ----LELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSED 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1370 RKLELDILPLQEANAELSEksgmlqaEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGR 1449
Cdd:pfam02463 473 LLKETQLVKLQEQLELLLS-------RQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAI 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1450 LKAEIARSNAS---LTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNK 1526
Cdd:pfam02463 546 STAVIVEVSATadeVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVV 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1527 AMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQD 1606
Cdd:pfam02463 626 EGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1607 KTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELR 1686
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670
....*....|....*....|....*....|....*...
gi 568907995 1687 EHQERHLEQRDEPQEPTNKAPEQQRQITLKTTPASGER 1724
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLL 823
|
|
| PTZ00440 |
PTZ00440 |
reticulocyte binding protein 2-like protein; Provisional |
744-1288 |
1.05e-05 |
|
reticulocyte binding protein 2-like protein; Provisional
Pssm-ID: 240419 [Multi-domain] Cd Length: 2722 Bit Score: 51.37 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 744 AALKQLQEIFeNYKKEKIDSEKLQ---NEQLEKLQEQVTDLRSQNTKIST--QLDFASKRYEMLQDNVEgyrreitSLQE 818
Cdd:PTZ00440 833 EELKQLLQKF-PTEDENLNLKELEkefNENNQIVDNIIKDIENMNKNINIikTLNIAINRSNSNKQLVE-------HLLN 904
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 819 RNQKLTATTQKQEQIINTmtQDLRGANEKLAVAEvraeNLKKEKEML--KLSEVRLSQQRESLLAEQRGQNLLLTNLQTI 896
Cdd:PTZ00440 905 NKIDLKNKLEQHMKIINT--DNIIQKNEKLNLLN----NLNKEKEKIekQLSDTKINNLKMQIEKTLEYYDKSKENINGN 978
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 897 QGI-LERSETETK--QRLNSQIEKLEHEISHLKKKLENEVEQRHTltrnlDVQLLDTKRQLDTEINLHLNTKELLKNAQK 973
Cdd:PTZ00440 979 DGThLEKLDKEKDewEHFKSEIDKLNVNYNILNKKIDDLIKKQHD-----DIIELIDKLIKEKGKEIEEKVDQYISLLEK 1053
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 974 DIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLKERlktSTSNVEQYRAMVTSLEDSLNKEKQ 1053
Cdd:PTZ00440 1054 MKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKVEALLKKIDENKNKLIEIKNK---SHEHVVNADKEKNKQTEHYNKKKK 1130
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1054 VTEEVHKNIEVRLKESAEFQTQlEKKLMEVEKEKQELqddKRKAIESMEQQLSELKKTLSTVQNEVQ---EALQRASTAL 1130
Cdd:PTZ00440 1131 SLEKIYKQMEKTLKELENMNLE-DITLNEVNEIEIEY---ERILIDHIVEQINNEAKKSKTIMEEIEsykKDIDQVKKNM 1206
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1131 SNEQQARRDCQEQAKIAVEAQNKYER--ELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKA-------ESQLLECKA 1201
Cdd:PTZ00440 1207 SKERNDHLTTFEYNAYYDKATASYENieELTTEAKGLKGEANRSTNVDELKEIKLQVFSYLQQVikennkmENALHEIKN 1286
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1202 SWE-----ERERVLKdEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIR 1276
Cdd:PTZ00440 1287 MYEflisiDSEKILK-EILNSTKKAEEFSNDAKKELEKTDNLIKQVEAKIEQAKEHKNKIYGSLEDKQIDDEIKKIEQIK 1365
|
570
....*....|..
gi 568907995 1277 reKEIAETRFEV 1288
Cdd:PTZ00440 1366 --EEISNKRKEI 1375
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1085-1701 |
1.41e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 50.49 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1085 KEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDC---QEQAKIAVEAQNKYERElmlh 1161
Cdd:pfam05483 102 KQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCnllKETCARSAEKTKKYEYE---- 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1162 aaDVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDK 1241
Cdd:pfam05483 178 --REETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENK 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1242 V--VTSMKDAVQAPLNvSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVERE 1319
Cdd:pfam05483 256 MkdLTFLLEESRDKAN-QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKE 334
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1320 -KVQVTAKTMAQHEELMKKTETMNVVMEtnKMLREEKERLEQNLQQmqakvrkLELDILPLQEANAELSEKSGMlqaekk 1398
Cdd:pfam05483 335 aQMEELNKAKAAHSFVVTEFEATTCSLE--ELLRTEQQRLEKNEDQ-------LKIITMELQKKSSELEEMTKF------ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1399 lleedvkrwkarnqqliNQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKA 1478
Cdd:pfam05483 400 -----------------KNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAI 462
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1479 RTEKEGIQKDLdakiidiqEKVKTITQVKKIGRRYKTQFEELKAQQNKAMEtstqssgdhQEQHISVQEMQELKDTLSQS 1558
Cdd:pfam05483 463 KTSEEHYLKEV--------EDLKTELEKEKLKNIELTAHCDKLLLENKELT---------QEASDMTLELKKHQEDIINC 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1559 ETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSElsrLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGV 1638
Cdd:pfam05483 526 KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1639 KDQLTKEIEELKQRNGALDQQKDELDVRMTAlksqYEGRISRLERELREHQERHLEQRDEPQE 1701
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNA----YEIKVNKLELELASAKQKFEEIIDNYQK 661
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
741-944 |
1.44e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.76 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 741 EAKAALKQLQEIFENYKKEKIDSEKlqneQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERN 820
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLK----QLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 821 QKLTATTQKQEQIINTM----TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTI 896
Cdd:COG4942 107 AELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 568907995 897 QGILERSETETKQRLNsqieKLEHEISHLKKKLENEVEQRHTLTRNLD 944
Cdd:COG4942 187 RAALEALKAERQKLLA----RLEKELAELAAELAELQQEAEELEALIA 230
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1271-1583 |
1.59e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.46 E-value: 1.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1271 ILRFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDslnvEREKVQVTAKTMAQHEE--LMKKTETMNVVMETN 1348
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI----DVKSISSLKLVNLELESeiIELKKSLSSDLIENL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1349 KMLREEKERLEQNLQQMQAKVRKL----ELDIL-PLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPdt 1423
Cdd:COG5022 924 EFKTELIARLKKLLNNIDLEEGPSieyvKLPELnKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL-- 1001
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1424 EEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLiqslredlskarTEKEGIQKDLDAKIIDIQEKVKTI 1503
Cdd:COG5022 1002 AELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSIL------------KPLQKLKGLLLLENNQLQARYKAL 1069
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1504 TQVKKIGRRYKTQFEELKAQQNKAME--------TSTQSSGD------HQEQHISVQEMQELKDTLSQSETKTKSLEGQV 1569
Cdd:COG5022 1070 KLRRENSLLDDKQLYQLESTENLLKTinvkdlevTNRNLVKPanvlqfIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKL 1149
|
330
....*....|....
gi 568907995 1570 ENLQKTLSEKETEA 1583
Cdd:COG5022 1150 SVLQLELDGLFWEA 1163
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
77-446 |
1.92e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 1.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 77 AVLQQVLERpELNKLPKSTQNKLEKF---LAEQQSEIDCLKGRHEKF------KVESEQQYFEIEKRLSQSQERLVTETR 147
Cdd:COG4717 45 AMLLERLEK-EADELFKPQGRKPELNlkeLKELEEELKEAEEKEEEYaelqeeLEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 148 ECQNLRL--ELEKLNNQVKVLTEKTKELETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLS----QEVEYLTEDVKR 221
Cdd:COG4717 124 LLQLLPLyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateEELQDLAEELEE 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 222 LNEKLKESNTTKGELQLKLDELQA------SDVAVKYREKRLEQEK----------ELLHNQNSWLNTELKTKTDELLAL 285
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEeleqleNELEAAALEERLKEARlllliaaallALLGLGGSLLSLILTIAGVLFLVL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 286 G-------------REKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFH-- 350
Cdd:COG4717 284 GllallflllarekASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEel 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 351 NELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEML-EKIGKLEKEL-E 428
Cdd:COG4717 364 QLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELeEELEELEEELeE 443
|
410
....*....|....*...
gi 568907995 429 NANDLLSATKRKGAILSE 446
Cdd:COG4717 444 LEEELEELREELAELEAE 461
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
352-1291 |
2.33e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 2.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 352 ELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLlqVEESKDQMEKEMLEKIGKLEkELENAN 431
Cdd:PTZ00121 1061 EAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKA--EEARKAEEAKKKAEDARKAE-EARKAE 1137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 432 DLLSAtkrkgailsEEELAAMSPTAAAVAKIVKPGMKLTELYNAyvetQDQLLLEKQENKRINKYLDEIVKEVEAKAPIL 511
Cdd:PTZ00121 1138 DARKA---------EEARKAEDAKRVEIARKAEDARKAEEARKA----EDAKKAEAARKAEEVRKAEELRKAEDARKAEA 1204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 512 KRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEAR-GNHVI 590
Cdd:PTZ00121 1205 ARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkADELK 1284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 591 RDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRELGETREREEQETTSSKIAELQHKLENSLAELEQLRES 670
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 671 RQHQMQLVDSIVRQRDMYRILLSQTTGMAIPLQASSLDDISLLSTPKRSSTSQTVSTPAPEPVIDSTEAIEAKAALKQLQ 750
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 751 EIFENYKK--EKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQL----DFASKRYEMLQDNVEGYRREITSLQERNQKLT 824
Cdd:PTZ00121 1445 KADEAKKKaeEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAkkkaEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 825 ATTQKQEQiiNTMTQDLRGANEKLAVAEVR-AENLKKEKEMLKLSEVRLSQQRESLlAEQRGQNLLLTNLQTIQGILERS 903
Cdd:PTZ00121 1525 DEAKKAEE--AKKADEAKKAEEKKKADELKkAEELKKAEEKKKAEEAKKAEEDKNM-ALRKAEEAKKAEEARIEEVMKLY 1601
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 904 ETETKQRLNSQIEKLEHEISHLKKKLENEVEQRhtltrnldvqlldtKRQLDTEINLHLNTKELLKNAQKDIATLKQHLN 983
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK--------------VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEA 1667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 984 NMEAQLASQStqrtgqpgdrddvddlkSQLRQAEEQVNDLKERLKTSTsnveqyramvtsledslnKEKQVTEEVHKNIE 1063
Cdd:PTZ00121 1668 KKAEEDKKKA-----------------EEAKKAEEDEKKAAEALKKEA------------------EEAKKAEELKKKEA 1712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1064 VRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAiESMEQQLSELKKT--LSTVQNEVQEALQRASTALSNEQQARRDCQ 1141
Cdd:PTZ00121 1713 EEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA-EEAKKDEEEKKKIahLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1142 EQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSirqHLEETTQKAESQLLECKAsWEERERVLKDEVSKSVSRC 1221
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS---AIKEVADSKNMQLEEADA-FEKHKFNKNNENGEDGNKE 1867
|
890 900 910 920 930 940 950
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1222 EDLEKQNRLLHDQIEKL--SDKVVTSMKDAVQAPLNVSlNEEGKSQEQI---LEILRFIRREKEiaETRFEVAQV 1291
Cdd:PTZ00121 1868 ADFNKEKDLKEDDEEEIeeADEIEKIDKDDIEREIPNN-NMAGKNNDIIddkLDKDEYIKRDAE--ETREEIIKI 1939
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
118-583 |
3.35e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.25 E-value: 3.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 118 EKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETaqdrnlgiqsQFTRAKEELEAE 197
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEV----------ELNKLEKQKKEN 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 198 KRDLIRTNE---RLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLHNQNSwLNTE 274
Cdd:TIGR04523 137 KKNIDKFLTeikKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQ-KNKS 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 275 LKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFhNELN 354
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQL-NQLK 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 355 AHIKLSNLYKSAADDSEAKSnELTRAVDELHKLLKEAGEANKTIQdhllqveeskdqmekEMLEKIGKLEKELENANDLL 434
Cdd:TIGR04523 295 SEISDLNNQKEQDWNKELKS-ELKNQEKKLEEIQNQISQNNKIIS---------------QLNEQISQLKKELTNSESEN 358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 435 SATKRKgaiLSEEElaamsptaAAVAKIVKPGM-KLTELYNAYVETQDqLLLEKQENKRINKYLDEIVKEVEakapilkr 513
Cdd:TIGR04523 359 SEKQRE---LEEKQ--------NEIEKLKKENQsYKQEIKNLESQIND-LESKIQNQEKLNQQKDEQIKKLQ-------- 418
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 514 qrEEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEE 583
Cdd:TIGR04523 419 --QEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQ 486
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
192-573 |
4.29e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 49.13 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 192 EELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLHNQNSWL 271
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKII 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 272 NTELKTKTDELLALGREKgNEILELKCNLENKKEEVLRLEEQMNGLktsnEHLQKHVEDLLTKLKEAKE--QQASMEEKF 349
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYK-NDIENKKQILSNIDAEINKYHAIIKKL----SVLQKDYNDYIKKKSRYDDlnNQILELEGY 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 350 HNELNAHIklsNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKemleKIGKLEKELEN 429
Cdd:PRK01156 362 EMDYNSYL---KSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS----KVSSLNQRIRA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 430 ANDLLSATKRKGAILSEEELAAMSPTAAAVAKIvkpgmklTELYNAYVETQDQLLLEKQENKRINKYLDE-IVKEVEAKA 508
Cdd:PRK01156 435 LRENLDELSRNMEMLNGQSVCPVCGTTLGEEKS-------NHIINHYNEKKSRLEEKIREIEIEVKDIDEkIVDLKKRKE 507
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 509 PILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANkhssvlERDNQRMEIQIKDLSQQ 573
Cdd:PRK01156 508 YLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYE------EIKNRYKSLKLEDLDSK 566
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
166-489 |
4.51e-05 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 48.74 E-value: 4.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 166 LTEKTKELETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQA 245
Cdd:pfam07888 43 RAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 246 SDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKGNEILE---LKCNLENKKEEVLRLEEQMNGLK---- 318
Cdd:pfam07888 123 QRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAErkqLQAKLQQTEEELRSLSKEFQELRnsla 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 319 ---TSNEHLQKHVEDLLTKLKEAKEQQASMEEkFHNELNAHIKLSNLYKSAAD----DSEAKSNELTRAVDELHKLLKEA 391
Cdd:pfam07888 203 qrdTQVLQLQDTITTLTQKLTTAHRKEAENEA-LLEELRSLQERLNASERKVEglgeELSSMAAQRDRTQAELHQARLQA 281
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 392 GEANKTIQDHLLQVEESKDQMEKEMLEKIGKLEKELENANDLLSATKRKGAILSEE-------ELAAMSPTAAAVAKIVK 464
Cdd:pfam07888 282 AQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEErmereklEVELGREKDCNRVQLSE 361
|
330 340
....*....|....*....|....*...
gi 568907995 465 PGMKLTELYNAYVETQ---DQLLLEKQE 489
Cdd:pfam07888 362 SRRELQELKASLRVAQkekEQLQAEKQE 389
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
909-1105 |
4.83e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 47.23 E-value: 4.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 909 QRLNSQIEKLEHEISHLKK---KLENEVEQRHTLTRNLDVQLLDTKRQLdteinlhlntkellKNAQKDIATLKQHLNNM 985
Cdd:COG1579 13 QELDSELDRLEHRLKELPAelaELEDELAALEARLEAAKTELEDLEKEI--------------KRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 986 EAQLASQSTQRtgqpgdrdDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKqvteevhknievr 1065
Cdd:COG1579 79 EEQLGNVRNNK--------EYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELE------------- 137
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568907995 1066 lKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQL 1105
Cdd:COG1579 138 -AELEEKKAELDEELAELEAELEELEAEREELAAKIPPEL 176
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
1394-1769 |
5.07e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 48.89 E-value: 5.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1394 QAEKKLLEEDVKRwkarNQQLINQQKDPDTEEYRKLlsEKEIHTKRIQQLN----EEVGRLKAEIARSNASLTNNQNLIQ 1469
Cdd:PTZ00108 900 EDYKEFLESETLK----EKDVIVDYRDYSTANTVHF--TVKLNDGVLEQWEeegiEKVFKLKSTISTTNMVLFDENGKIK 973
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1470 -------------SLREDLSKARteKEGIQKDLDAKIIDIQEKVKTITQV--------------------KKIGRRYKtQ 1516
Cdd:PTZ00108 974 kysdaldilkefyLVRLDLYKKR--KEYLLGKLERELARLSNKVRFIKHVingelvitnakkkdlvkelkKLGYVRFK-D 1050
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1517 FEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKD---TLSQ---SETKTKslegqVENLQKTLSEKETEARSLQEQT 1590
Cdd:PTZ00108 1051 IIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSydyLLSMpiwSLTKEK-----VEKLNAELEKKEKELEKLKNTT 1125
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1591 VQL--QSELSRLRQDLQD------KTTEEQLRQQMNEK----------------------TWKTLALAKSKITHLSGVKD 1640
Cdd:PTZ00108 1126 PKDmwLEDLDKFEEALEEqeeveeKEIAKEQRLKSKTKgkasklrkpklkkkekkkkkssADKSKKASVVGNSKRVDSDE 1205
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1641 QLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQITLK---- 1716
Cdd:PTZ00108 1206 KRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVqysp 1285
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 1717 ---TTPASGERGIASTSDPPTANIKPTPVVSTPSKVTAAAMAGNKSTPRASIRPMV 1769
Cdd:PTZ00108 1286 pppSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRV 1341
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1504-1682 |
6.14e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1504 TQVKKIGRRYKTQFEELKA--QQNKAMETSTQSSgdhqeqhISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKET 1581
Cdd:COG3206 182 EQLPELRKELEEAEAALEEfrQKNGLVDLSEEAK-------LLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1582 EA---------RSLQEQTVQLQSELSRLRQDLQD--------KTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTK 1644
Cdd:COG3206 255 ALpellqspviQQLRAQLAELEAELAELSARYTPnhpdvialRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568907995 1645 EIEELKQRNGALDQQKDELDV---RMTALKSQYEGRISRLE 1682
Cdd:COG3206 335 QLAQLEARLAELPELEAELRRlerEVEVARELYESLLQRLE 375
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1505-1729 |
6.90e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.51 E-value: 6.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1505 QVKKIGRRYKtQFEELKAQQNKAMETSTQSSGDHQEQHisVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEAR 1584
Cdd:TIGR02168 201 QLKSLERQAE-KAERYKELKAELRELELALLVLRLEEL--REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1585 SLQEQTVQLQSELSRLRQDLQDKTTEEQL-------RQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALD 1657
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQIlrerlanLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1658 QQKDELDVRMTALKSQYE------------------------GRISRLERELrEHQERHLEQRDEPQEPTNKAPEQQRQI 1713
Cdd:TIGR02168 358 AELEELEAELEELESRLEeleeqletlrskvaqlelqiaslnNEIERLEARL-ERLEDRRERLQQEIEELLKKLEEAELK 436
|
250
....*....|....*.
gi 568907995 1714 TLKTTPASGERGIAST 1729
Cdd:TIGR02168 437 ELQAELEELEEELEEL 452
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
87-931 |
6.97e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.51 E-value: 6.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 87 ELNKLPKSTQNKLEKFLAEQQSEIDCLKGRHEKFKVESEQ----QYF-EIEKRLSQSQERLVTETREcqnlrlELEKLNN 161
Cdd:TIGR01612 956 ESNLIEKSYKDKFDNTLIDKINELDKAFKDASLNDYEAKNneliKYFnDLKANLGKNKENMLYHQFD------EKEKATN 1029
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 162 QVKVLTEKTKEleTAQDRNLGIQSQFTRAKEELEAE-KRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGelqLKL 240
Cdd:TIGR01612 1030 DIEQKIEDANK--NIPNIEIAIHTSIYNIIDEIEKEiGKNIELLNKEILEEAEINITNFNEIKEKLKHYNFDDF---GKE 1104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 241 DELQASDVAVKYREKRLEQEKELLHNQNSWlnTELKTKTDELLALGREKGNEiLELKCNLENKKEEVLRLEEQMNGLKTS 320
Cdd:TIGR01612 1105 ENIKYADEINKIKDDIKNLDQKIDHHIKAL--EEIKKKSENYIDEIKAQIND-LEDVADKAISNDDPEEIEKKIENIVTK 1181
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 321 ---NEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEankt 397
Cdd:TIGR01612 1182 idkKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLEKIDEEKKKSEHMIKAMEAYIEDLDEIKE---- 1257
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 398 iqdhllQVEESKDQMEKEMLEKigkleKELENANdLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYV 477
Cdd:TIGR01612 1258 ------KSPEIENEMGIEMDIK-----AEMETFN-ISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKK 1325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 478 ETQDQLLLEKQENKRINKYLDEI-----------VKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEdt 546
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIaniynilklnkIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEE-- 1403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 547 DKANKHSSVLERDnqrmeiqIKDLSQQIRVLlmeleearGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQR 626
Cdd:TIGR01612 1404 CKSKIESTLDDKD-------IDECIKKIKEL--------KNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQH 1468
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 627 LL------------FALREL--------GETREREEQETTSSKIAEL--QHKLE-----NSLAELE---QLRESRQHQMQ 676
Cdd:TIGR01612 1469 ILkikkdnatndhdFNINELkehidkskGCKDEADKNAKAIEKNKELfeQYKKDvtellNKYSALAiknKFAKTKKDSEI 1548
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 677 LVDSIVRQRDMYrILLSQTTGMAIPL----QASSLDDISLLSTPKRSSTSQTVSTPAPEPVIDSTEAIEAKA--ALKQLQ 750
Cdd:TIGR01612 1549 IIKEIKDAHKKF-ILEAEKSEQKIKEikkeKFRIEDDAAKNDKSNKAAIDIQLSLENFENKFLKISDIKKKIndCLKETE 1627
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 751 EIFENYKKEKIDSE----KLQNEQLEKLQEQVTDLRSQNTKIS---TQLDFASKRYEMLQDNVEGYRR--EITSLQERNQ 821
Cdd:TIGR01612 1628 SIEKKISSFSIDSQdtelKENGDNLNSLQEFLESLKDQKKNIEdkkKELDELDSEIEKIEIDVDQHKKnyEIGIIEKIKE 1707
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 822 KLTATTQKQEQIINTM------------TQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRL----SQQRESLLAEQ-- 883
Cdd:TIGR01612 1708 IAIANKEEIESIKELIeptienlissfnTNDLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAgcleTVSKEPITYDEik 1787
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|...
gi 568907995 884 ----RGQNLLLTNLQtiqgilerSETETKQRL-NSQIEKLEHEISHLKKKLEN 931
Cdd:TIGR01612 1788 ntriNAQNEFLKIIE--------IEKKSKSYLdDIEAKEFDRIINHFKKKLDH 1832
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1547-1691 |
7.55e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.46 E-value: 7.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1547 EMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQD-----KTTEEQLRQQMNEKT 1621
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEveariKKYEEQLGNVRNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568907995 1622 WKTL----ALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELREHQER 1691
Cdd:COG1579 91 YEALqkeiESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1468-1698 |
8.95e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 8.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1468 IQSLREDLSKARTEkegiqkdldakIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQnkametstqSSGDHQEQHISVQE 1547
Cdd:COG4913 230 LVEHFDDLERAHEA-----------LEDAREQIELLEPIRELAERYAAARERLAELE---------YLRAALRLWFAQRR 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1548 MQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQ-SELSRLRQDLQDKTTEEQLRQQmnekTWKTLA 1626
Cdd:COG4913 290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgDRLEQLEREIERLERELEERER----RRARLE 365
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1627 lakskiTHLSGVKDQLTKEIEELKQRNGALDQQKDELDvrmtALKSQYEGRISRLERELREHQERHLEQRDE 1698
Cdd:COG4913 366 ------ALLAALGLPLPASAEEFAALRAEAAALLEALE----EELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
731-935 |
1.01e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 731 EPVI--DSTEAIEAKAAlkQLQEIfenykKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKIStQLDFAskryemlQDNVEG 808
Cdd:COG4913 601 RYVLgfDNRAKLAALEA--ELAEL-----EEELAEAEERLEALEAELDALQERREALQRLA-EYSWD-------EIDVAS 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 809 YRREITSLQERNQKLTATTQkqeqiintmtqDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLL-------- 880
Cdd:COG4913 666 AEREIAELEAELERLDASSD-----------DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEeeldelqd 734
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568907995 881 ----AEQRGQNLLLTNLQT--IQGILERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQ 935
Cdd:COG4913 735 rleaAEDLARLELRALLEErfAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
96-1122 |
1.11e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 47.74 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 96 QNKLEKFLAEQQSEIDCLKgrhekfKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELET 175
Cdd:TIGR01612 1138 KKKSENYIDEIKAQINDLE------DVADKAISNDDPEEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEE 1211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 176 AQDRNLGI-QSQFTRAKEELEAEKrdliRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVA-VKYR 253
Cdd:TIGR01612 1212 VKGINLSYgKNLGKLFLEKIDEEK----KKSEHMIKAMEAYIEDLDEIKEKSPEIENEMGIEMDIKAEMETFNIShDDDK 1287
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 254 EKRLEQEKellHNQNSwlnTELKTKTDELLALGREKGNeilelkcnlenkkeevlrleeqMNGLKTSnehLQKHVEDllt 333
Cdd:TIGR01612 1288 DHHIISKK---HDENI---SDIREKSLKIIEDFSEESD----------------------INDIKKE---LQKNLLD--- 1333
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 334 klkeakeqqasmEEKFHNELNAHI-KLSNLYKSaaddseAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEE--SKD 410
Cdd:TIGR01612 1334 ------------AQKHNSDINLYLnEIANIYNI------LKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKliKKI 1395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 411 QMEKEMLEKIGKLEKELENAND---LLSATKRKGAILSEE-ELAAMSPTAAAVAKIVKPGMKLTELYNayveTQDQLLLE 486
Cdd:TIGR01612 1396 KDDINLEECKSKIESTLDDKDIdecIKKIKELKNHILSEEsNIDTYFKNADENNENVLLLFKNIEMAD----NKSQHILK 1471
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 487 KQENKRINKYlDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIqrlqedTDKANKHSSV--------LER 558
Cdd:TIGR01612 1472 IKKDNATNDH-DFNINELKEHIDKSKGCKDEADKNAKAIEKNKELFEQYKKDV------TELLNKYSALaiknkfakTKK 1544
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 559 DNQRMEIQIKDLSQQIrVLLMELEEARGNHV------IRDEEVSSADISSSSEVISQHLVSYRN----IEELQQQNQRLL 628
Cdd:TIGR01612 1545 DSEIIIKEIKDAHKKF-ILEAEKSEQKIKEIkkekfrIEDDAAKNDKSNKAAIDIQLSLENFENkflkISDIKKKINDCL 1623
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 629 FALRELGETREREEQETTSSKIAELQHKLeNSLAE-LEQLRESRQH---QMQLVDSIVRQRDMYRILLSQTTGMAIPLQA 704
Cdd:TIGR01612 1624 KETESIEKKISSFSIDSQDTELKENGDNL-NSLQEfLESLKDQKKNiedKKKELDELDSEIEKIEIDVDQHKKNYEIGII 1702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 705 SSLDDISLLSTPKRSSTSQTVStPAPEPVIDS-----TEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKL-QEQV 778
Cdd:TIGR01612 1703 EKIKEIAIANKEEIESIKELIE-PTIENLISSfntndLEGIDPNEKLEEYNTEIGDIYEEFIELYNIIAGCLETVsKEPI 1781
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 779 TDLRSQNTKISTQLDF-----ASKRYEMLQDNVEgyrreitsLQERNQKLTATTQKQEQIINTMTQDLRGANEKLavaev 853
Cdd:TIGR01612 1782 TYDEIKNTRINAQNEFlkiieIEKKSKSYLDDIE--------AKEFDRIINHFKKKLDHVNDKFTKEYSKINEGF----- 1848
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 854 raENLKKEkemlkLSEVRLSQQRESLLaeqrgqNLLLTNLQTIQGILERSETETKQrlnsQIEKLEHEISHLKKKLENEV 933
Cdd:TIGR01612 1849 --DDISKS-----IENVKNSTDENLLF------DILNKTKDAYAGIIGKKYYSYKD----EAEKIFINISKLANSINIQI 1911
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 934 EQRH--TLTRNLDVQLLDTkrqLDTEINlhlNTKELLKNAQKDIATLKQHLNNMEAQL----ASQSTQRTGQpgDRDDVD 1007
Cdd:TIGR01612 1912 QNNSgiDLFDNINIAILSS---LDSEKE---DTLKFIPSPEKEPEIYTKIRDSYDTLLdifkKSQDLHKKEQ--DTLNII 1983
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1008 DLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEvHKNIEVRLKESAefQTQLEKKLMEVEKEK 1087
Cdd:TIGR01612 1984 FENQQLYEKIQASNELKDTLSDLKYKKEKILNDVKLLLHKFDELNKLSCD-SQNYDTILELSK--QDKIKEKIDNYEKEK 2060
|
1050 1060 1070
....*....|....*....|....*....|....*
gi 568907995 1088 QELQDDKRkaIESMEQQLSELKKTLSTVQNEVQEA 1122
Cdd:TIGR01612 2061 EKFGIDFD--VKAMEEKFDNDIKDIEKFENNYKHS 2093
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1010-1172 |
1.15e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.47 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1010 KSQLRQAEEQVNDLKERLKTSTSNVEQyramvtsledslNKEKQVTEEVHK-----NIEVRLKESaEFQTQ--------- 1075
Cdd:PRK12704 30 EAKIKEAEEEAKRILEEAKKEAEAIKK------------EALLEAKEEIHKlrnefEKELRERRN-ELQKLekrllqkee 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1076 -LEKKLMEVEKEKQELqDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRAStALSNEqQARRDCQEQakiaVEAQNKY 1154
Cdd:PRK12704 97 nLDRKLELLEKREEEL-EKKEKELEQKQQELEKKEEELEELIEEQLQELERIS-GLTAE-EAKEILLEK----VEEEARH 169
|
170
....*....|....*...
gi 568907995 1155 ERELMLHAADVEALQAAK 1172
Cdd:PRK12704 170 EAAVLIKEIEEEAKEEAD 187
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1319-1710 |
1.34e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 1.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1319 EKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELS----------E 1388
Cdd:TIGR00618 219 ERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINrarkaaplaaH 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1389 KSGMLQAEKK-------LLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASL 1461
Cdd:TIGR00618 299 IKAVTQIEQQaqrihteLQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1462 TNnqnlIQSLREDLSKArTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFE-ELKAQQNKAMETSTQSSGDHQE 1540
Cdd:TIGR00618 379 QH----IHTLQQQKTTL-TQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKkQQELQQRYAELCAAAITCTAQC 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1541 QHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEK 1620
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRG 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1621 TWKTLALAKSkITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEG-------------RISRLERELRE 1687
Cdd:TIGR00618 534 EQTYAQLETS-EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNlqnitvrlqdlteKLSEAEDMLAC 612
|
410 420
....*....|....*....|...
gi 568907995 1688 HQERHLEQRDEPQEPTNKAPEQQ 1710
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQ 635
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
103-291 |
1.64e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 103 LAEQQSEIDCLKGRHEKFK-VESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQDRNL 181
Cdd:COG4913 257 IRELAERYAAARERLAELEyLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNG 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 182 GiqsqftRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLkesNTTKGELQLKLDELQASDVAVKYREKRLEQEK 261
Cdd:COG4913 337 G------DRLEQLEREIERLERELEERERRRARLEALLAALGLPL---PASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
170 180 190
....*....|....*....|....*....|
gi 568907995 262 ELLHNQNSWLNTELKTKTDELLALGREKGN 291
Cdd:COG4913 408 AEAEAALRDLRRELRELEAEIASLERRKSN 437
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
740-1675 |
1.70e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 740 IEAKAALKQLQEIFENYKKEKIDSEKLQNEQ------LEKLQEQVTDLRSQNTKIStqldfasKRYEMLQDNVEGYRREI 813
Cdd:pfam01576 96 NEKKKMQQHIQDLEEQLDEEEAARQKLQLEKvtteakIKKLEEDILLLEDQNSKLS-------KERKLLEERISEFTSNL 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 814 TSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEqrgqnlLLTNL 893
Cdd:pfam01576 169 AEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQ------LAKKE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 894 QTIQGILERSETETKQRLNSQ--IEKLEHEISHLKKKLENEVEQRHTLT---RNLDVQLLDTKRQLDTEINLHLNTKELL 968
Cdd:pfam01576 243 EELQAALARLEEETAQKNNALkkIRELEAQISELQEDLESERAARNKAEkqrRDLGEELEALKTELEDTLDTTAAQQELR 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 969 KNAQKDIATLKQHLnnmEAQLASQSTQrtgqpgdrddVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSL 1048
Cdd:pfam01576 323 SKREQEVTELKKAL---EEETRSHEAQ----------LQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAEL 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1049 NKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRK----------AIESMEQQLSELKKTLSTVQNE 1118
Cdd:pfam01576 390 QAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKlqselesvssLLNEAEGKNIKLSKDVSSLESQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1119 ---VQEALQRA-------STALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAAdveALQAAKEQVSKMTSIRQHLEET 1188
Cdd:pfam01576 470 lqdTQELLQEEtrqklnlSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQA---QLSDMKKKLEEDAGTLEALEEG 546
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1189 TQKAESQLLECKASWEERErvlkdevsksvSRCEDLEKQNRLLHDQIEKL-----SDKVVTSMKDAVQAPLNVSLNEEGK 1263
Cdd:pfam01576 547 KKRLQRELEALTQQLEEKA-----------AAYDKLEKTKNRLQQELDDLlvdldHQRQLVSNLEKKQKKFDQMLAEEKA 615
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1264 SQEQILEilrfiRREKEIAETRFEVAQVESL-RYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQH-EELMKKTETM 1341
Cdd:pfam01576 616 ISARYAE-----ERDRAEAEAREKETRALSLaRALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNvHELERSKRAL 690
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1342 NVVMETNKMLREEKE-----------RLEQNLQQMQAKV------------RKLELDILPLQEANAELSE---KSGMLQA 1395
Cdd:pfam01576 691 EQQVEEMKTQLEELEdelqatedaklRLEVNMQALKAQFerdlqardeqgeEKRRQLVKQVRELEAELEDerkQRAQAVA 770
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1396 EKKLLEEDVKRWKARNQQlINQQKDPDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDL 1475
Cdd:pfam01576 771 AKKKLELDLKELEAQIDA-ANKGREEAVKQLKKLQAQMKDLQRELEEARASRDEILAQSKESEKKLKNLEAELLQLQEDL 849
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1476 SKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQF----EELKAQQNKAMETSTQSSGDHQEQHISVQEMQEL 1551
Cdd:pfam01576 850 AASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIaqleEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAE 929
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1552 KDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQ-LQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLalaks 1630
Cdd:pfam01576 930 RSTSQKSESARQQLERQNKELKAKLQEMEGTVKSKFKSSIAaLEAKIAQLEEQLEQESRERQAANKLVRRTEKKL----- 1004
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*
gi 568907995 1631 kithlsgvkDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYE 1675
Cdd:pfam01576 1005 ---------KEVLLQVEDERRHADQYKDQAEKGNSRMKQLKRQLE 1040
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1546-1695 |
1.77e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1546 QEMQELKDTLSQSETKTKSLEGQVENL--QKTLSEKETEARSLQEQTVQLQSELSRLRQDLqdktteEQLrqqmnEKTWK 1623
Cdd:COG4913 617 AELAELEEELAEAEERLEALEAELDALqeRREALQRLAEYSWDEIDVASAEREIAELEAEL------ERL-----DASSD 685
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1624 TLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGRISRLERELREHQERHLEQ 1695
Cdd:COG4913 686 DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
487-1290 |
2.14e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.96 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 487 KQENKRINKYLDEIVKEVEAKAPilKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQ 566
Cdd:TIGR00606 278 KKQMEKDNSELELKMEKVFQGTD--EQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 567 IKDLSQQIRVLLMELEEargNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRE---LGETREREEQ 643
Cdd:TIGR00606 356 ADRHQEHIRARDSLIQS---LATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSkerLKQEQADEIR 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 644 ETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSivrqrdMYRILLSQTTGMAIPLQASSLDDISLLSTPKRSSTSQ 723
Cdd:TIGR00606 433 DEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS------SDRILELDQELRKAERELSKAEKNSLTETLKKEVKSL 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 724 TVstpapepviDSTEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKlQEQVTDLRSQNTKISTQLDFASKRYEMLQ 803
Cdd:TIGR00606 507 QN---------EKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDK-DEQIRKIKSRHSDELTSLLGYFPNKKQLE 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 804 DNVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVR------AENLKKEKEMLKLSEVRLSQQRE 877
Cdd:TIGR00606 577 DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKSSKQRA 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 878 SLLAEQRGQNLLLTNL----QTIQGILERsETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLDTKRQ 953
Cdd:TIGR00606 657 MLAGATAVYSQFITQLtdenQSCCPVCQR-VFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGR 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 954 ---LDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLAS--------------------------QSTQRTGQPGDRD 1004
Cdd:TIGR00606 736 qsiIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTimpeeesakvcltdvtimerfqmelkDVERKIAQQAAKL 815
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1005 DVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVhKNIEVRLKESAEFQTQLEKKLMEVE 1084
Cdd:TIGR00606 816 QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNEL-KSEKLQIGTNLQRRQQFEEQLVELS 894
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1085 KEKQELQddkrKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAK--------IAVEAQNKYER 1156
Cdd:TIGR00606 895 TEVQSLI----REIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKnihgymkdIENKIQDGKDD 970
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1157 ELMLHAADVEALQAAKEQVSK-MTSIRQHLEETTQKAESQlleckaswEERERVLKDEVSKSVSRcEDLEKQNRLLHDQI 1235
Cdd:TIGR00606 971 YLKQKETELNTVNAQLEECEKhQEKINEDMRLMRQDIDTQ--------KIQERWLQDNLTLRKRE-NELKEVEEELKQHL 1041
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1236 EKLSDKVVTSMKDAVQApLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQ 1290
Cdd:TIGR00606 1042 KEMGQMQVLQMKQEHQK-LEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1124-1675 |
2.19e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1124 QRASTALSNEQQARRDCQEQ-AKIAVEAQNKYERELmlhaadVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKAS 1202
Cdd:PRK02224 169 ERASDARLGVERVLSDQRGSlDQLKAQIEEKEEKDL------HERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1203 WEERERvlkdevsksvsRCEDLEKqnrlLHDQIEKLSDKVVTSMKDavqaplNVSLNEEGKSQEQILEILRfIRREKEIA 1282
Cdd:PRK02224 243 LEEHEE-----------RREELET----LEAEIEDLRETIAETERE------REELAEEVRDLRERLEELE-EERDDLLA 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1283 ETRFEVAQVESLRyrQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTEtmnvvmETNKMLREEKERLEQNL 1362
Cdd:PRK02224 301 EAGLDDADAEAVE--ARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE------ERAEELREEAAELESEL 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1363 QQMQAKVRKLELDILPLQEANAELSEKSG--------------MLQAEKKLLEEDVKRWKA----------RNQQLINQQ 1418
Cdd:PRK02224 373 EEAREAVEDRREEIEELEEEIEELRERFGdapvdlgnaedfleELREERDELREREAELEAtlrtarerveEAEALLEAG 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1419 KDPDT------EEYRKLLSEKEihtKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREdLSKARTEKEGIQKDLDAK 1492
Cdd:PRK02224 453 KCPECgqpvegSPHVETIEEDR---ERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR-IERLEERREDLEELIAER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1493 IIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMEtstqSSGDHQEqhisvqEMQELKDTLSQSETKTKSLEgQVENL 1572
Cdd:PRK02224 529 RETIEEKRERAEELRERAAELEAEAEEKREAAAEAEE----EAEEARE------EVAELNSKLAELKERIESLE-RIRTL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1573 QKTLSEKETEARSLQEQTVQLQ----------SELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAK--SKITHLSGVKD 1640
Cdd:PRK02224 598 LAAIADAEDEIERLREKREALAelnderrerlAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQveEKLDELREERD 677
|
570 580 590
....*....|....*....|....*....|....*....
gi 568907995 1641 QLTKEI----EELKQRNgALDQQKDELDVRMTALKSQYE 1675
Cdd:PRK02224 678 DLQAEIgaveNELEELE-ELRERREALENRVEALEALYD 715
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
90-670 |
2.23e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 90 KLPKSTQNKLEKFLAEQQSEIDCLKGRhEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEK 169
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKE-LKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 170 TKELE-----TAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQ 244
Cdd:pfam02463 396 ELELKseeekEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 245 aSDVAVKYREKRLEQEKELLHNQNSWLNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEHL 324
Cdd:pfam02463 476 -ETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVS 554
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 325 QKHVE-DLLTKLKEAKEQQASMEEKF---------------HNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLL 388
Cdd:pfam02463 555 ATADEvEERQKLVRALTELPLGARKLrllipklklplksiaVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTEL 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 389 KEAGEANKTIQDHLLQ-VEESKDQMEKEMLEKIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGM 467
Cdd:pfam02463 635 TKLKESAKAKESGLRKgVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKK 714
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 468 KLTELYNayVETQDQLLLEKQENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTD 547
Cdd:pfam02463 715 LKLEAEE--LLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK 792
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 548 KANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRL 627
Cdd:pfam02463 793 EEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 872
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 568907995 628 LFALRELGETREREEQETTSSKIAELQHKLENSLAELEQLRES 670
Cdd:pfam02463 873 LLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEK 915
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1003-1156 |
2.25e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.30 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1003 RDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNkekqvteEVHKNIEVR-LKESAEFQTQLEKKLM 1081
Cdd:COG1579 37 EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG-------NVRNNKEYEaLQKEIESLKRRISDLE 109
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1082 EVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRdcQEQAKIAVEAQNKYER 1156
Cdd:COG1579 110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE--ELAAKIPPELLALYER 182
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
736-1206 |
2.68e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.60 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 736 STEAIEAKaaLKQLQEIFENYKKEKIDSEKLQNE--QLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREI 813
Cdd:PRK03918 253 SKRKLEEK--IRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 814 TSLQERNQKLTATTQKQEQI----------------INTMTQDLRGANEKLAVAEV-----RAENLKKEKEMLKLSEVRL 872
Cdd:PRK03918 331 KELEEKEERLEELKKKLKELekrleeleerhelyeeAKAKKEELERLKKRLTGLTPeklekELEELEKAKEEIEEEISKI 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 873 SQQRESLLAEQRGQNLLLTNLQTIQGI---------------LERSETETKQRLNSQIEKLEHEISHLKK---KLENEVE 934
Cdd:PRK03918 411 TARIGELKKEIKELKKAIEELKKAKGKcpvcgrelteehrkeLLEEYTAELKRIEKELKEIEEKERKLRKelrELEKVLK 490
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 935 QRHTLTRNLdvQLLDTKRQLDTEINLHlnTKELLKNAQKDIATLKQHLNNMEAQLASQSTqrtgqpgDRDDVDDLKSQLR 1014
Cdd:PRK03918 491 KESELIKLK--ELAEQLKELEEKLKKY--NLEELEKKAEEYEKLKEKLIKLKGEIKSLKK-------ELEKLEELKKKLA 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1015 QAEEQVNDLKERLKtstSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIeVRLKESaefQTQLEKKLMEVEKEKQELQD-- 1092
Cdd:PRK03918 560 ELEKKLDELEEELA---ELLKELEELGFESVEELEERLKELEPFYNEY-LELKDA---EKELEREEKELKKLEEELDKaf 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1093 ----DKRKAIESMEQQLSELKKTLStvqNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELmlhAADVEAL 1168
Cdd:PRK03918 633 eelaETEKRLEELRKELEELEKKYS---EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL---KEELEER 706
|
490 500 510
....*....|....*....|....*....|....*...
gi 568907995 1169 QAAKEQVSKMTSIRQHLEETTQKaesqLLECKASWEER 1206
Cdd:PRK03918 707 EKAKKELEKLEKALERVEELREK----VKKYKALLKER 740
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1356-1614 |
2.82e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1356 ERLEQNLQQMQAKVRKLEldilPLQEANAELSEKSGmLQAEKKLLEEDVKRWKA-RNQQLINQQKDPDTEEYRKLLSEKE 1434
Cdd:COG4913 238 ERAHEALEDAREQIELLE----PIRELAERYAAARE-RLAELEYLRAALRLWFAqRRLELLEAELEELRAELARLEAELE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1435 IHTKRIQQLNEEVGRLKAEIARsnasltNNQNLIQSLREDLSKARTEKEGIQKDLDakiidiqekvKTITQVKKIGRRYK 1514
Cdd:COG4913 313 RLEARLDALREELDELEAQIRG------NGGDRLEQLEREIERLERELEERERRRA----------RLEALLAALGLPLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1515 TQFEELKAQQNKAMETSTQSSgdhqeqhisvQEMQELKDTLSQsetktksLEGQVENLQKTLSEKETEARSLQEQTVQLQ 1594
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALE----------EELEALEEALAE-------AEAALRDLRRELRELEAEIASLERRKSNIP 439
|
250 260
....*....|....*....|..
gi 568907995 1595 SELSRLRQDLQDKT--TEEQLR 1614
Cdd:COG4913 440 ARLLALRDALAEALglDEAELP 461
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1352-1473 |
3.20e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 46.00 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1352 REEKERLEQNLQQMQAKVRKLEldilplqeanaelsEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLS 1431
Cdd:COG2433 398 EREKEHEERELTEEEEEIRRLE--------------EQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRK 463
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 568907995 1432 EKEihtkrIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLRE 1473
Cdd:COG2433 464 DRE-----ISRLDREIERLERELEEERERIEELKRKLERLKE 500
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1337-1730 |
3.23e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.26 E-value: 3.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1337 KTETMNVVMETNKML---REEKERLEQNLQQMQAKVRKLE----LDILPLQEANAELSEKSGMLQAEKKLLEED---VKR 1406
Cdd:pfam15921 116 QTKLQEMQMERDAMAdirRRESQSQEDLRNQLQNTVHELEaakcLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIrsiLVD 195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1407 WKARNQQLINQQKDPDTEEYRKLLSEKeihTKRIQQLNEEVGRLKAEIARSNASL----TNNQNLIQSLredLSKARTEK 1482
Cdd:pfam15921 196 FEEASGKKIYEHDSMSTMHFRSLGSAI---SKILRELDTEISYLKGRIFPVEDQLealkSESQNKIELL---LQQHQDRI 269
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1483 EGIQKDLDAKIIDIQEKVKTI-TQVKKIGRRYKTQFEELKAQQNKAMETSTQssgdhQEQHISvQEMQELKDTLSQSETK 1561
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSArSQANSIQSQLEIIQEQARNQNSMYMRQLSD-----LESTVS-QLRSELREAKRMYEDK 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1562 TKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQ 1641
Cdd:pfam15921 344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDD 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1642 LTKEIEELKQRNGALDQQ-KDELDVRMTALKSQYEG--RISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQIT-LKT 1717
Cdd:pfam15921 424 RNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSdLTA 503
|
410
....*....|...
gi 568907995 1718 TPASGERGIASTS 1730
Cdd:pfam15921 504 SLQEKERAIEATN 516
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
80-929 |
3.24e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 46.19 E-value: 3.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 80 QQVLERPELNKLPKSTQNKLEKFLAEQQSEIDClkgrHEKFKVESEQQYFEIEKRLSQSQER----LVTETRECQNLRLE 155
Cdd:TIGR00606 188 LETLRQVRQTQGQKVQEHQMELKYLKQYKEKAC----EIRDQITSKEAQLESSREIVKSYENeldpLKNRLKEIEHNLSK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 156 LEKLNNQVKVLTEKTKELETAQDR--------NLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLK 227
Cdd:TIGR00606 264 IMKLDNEIKALKSRKKQMEKDNSElelkmekvFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKT 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 228 ESNTTKGELQLKLDELQAS------------------------------DVAVKYREKRLEQEKELLHNQNSWLNTELKT 277
Cdd:TIGR00606 344 ELLVEQGRLQLQADRHQEHirardsliqslatrleldgfergpfserqiKNFHTLVIERQEDEAKTAAQLCADLQSKERL 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 278 KT-------DELLALGR--EKGNEILELKCN-LENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEE 347
Cdd:TIGR00606 424 KQeqadeirDEKKGLGRtiELKKEILEKKQEeLKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEV 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 348 KFHNELNAHIKLSnlyKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQD--------------------HLLQVEE 407
Cdd:TIGR00606 504 KSLQNEKADLDRK---LRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKiksrhsdeltsllgyfpnkkQLEDWLH 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 408 SKDQMEKEMLEKIGKLEKELENANDLLSATKRKGAILsEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEK 487
Cdd:TIGR00606 581 SKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK-EEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 488 QENKRINKYLDEIVKEVEAKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVL-------ERDN 560
Cdd:TIGR00606 660 GATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlglapgrQSII 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 561 QRMEIQIKDLSQQIRVLLMELEEARGNhvIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQ----NQRLLFALRELGE 636
Cdd:TIGR00606 740 DLKEKEIPELRNKLQKVNRDIQRLKND--IEEQETLLGTIMPEEESAKVCLTDVTIMERFQMElkdvERKIAQQAAKLQG 817
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 637 TREREEQETTSSKIAELQHKLENSLAELEQLR---ESRQHQMQLVDSIVRQRDMYRILLSQTTGmaiplQASSLDDISLL 713
Cdd:TIGR00606 818 SDLDRTVQQVNQEKQEKQHELDTVVSKIELNRkliQDQQEQIQHLKSKTNELKSEKLQIGTNLQ-----RRQQFEEQLVE 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 714 STPKRSSTSQTVSTPAPEPVIDSTeaieakaALKQLQEIFENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLD 793
Cdd:TIGR00606 893 LSTEVQSLIREIKDAKEQDSPLET-------FLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQ 965
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 794 FASKRYEMLQD-NVEGYRREITSLQERNQKLTATTQKQEQIINTMTQDLRGANEKLAVaEVRAENLKKEKEMLKLSEVRL 872
Cdd:TIGR00606 966 DGKDDYLKQKEtELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL-RKRENELKEVEEELKQHLKEM 1044
|
890 900 910 920 930
....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 873 SQQResLLAEQRGQNLLLTNLQTIQgilersetETKQRLNSQIEKLEHEISHLKKKL 929
Cdd:TIGR00606 1045 GQMQ--VLQMKQEHQKLEENIDLIK--------RNHVLALGRQKGYEKEIKHFKKEL 1091
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
162-397 |
3.33e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 162 QVKVLTEKTKELETAQDRnlgiQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLD 241
Cdd:COG4942 18 QADAAAEAEAELEQLQQE----IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 242 ELQASDVAVKYREKRLEQEKELLHNQNSW---LNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLK 318
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLallLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568907995 319 TSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAhiklsnlYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKT 397
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAE-------LAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
839-1232 |
3.75e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.10 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 839 QDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESllAEQRgQNLLLTNLQTiQGILERSETEtkqrLNSQIEKL 918
Cdd:COG3096 292 RELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQA--ASDH-LNLVQTALRQ-QEKIERYQED----LEELTERL 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 919 EHEISHLKKKLENEVEQRHTLTR------NLDVQLLDTKRQLDTE----------INLHLNTKELLKNAQKDIATLKQHL 982
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEARLEAaeeevdSLKSQLADYQQALDVQqtraiqyqqaVQALEKARALCGLPDLTPENAEDYL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 983 NNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVndlkerlKTSTSNVEQYRAMVTSledslnkeKQVTEEVHkni 1062
Cdd:COG3096 444 AAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELV-------CKIAGEVERSQAWQTA--------RELLRRYR--- 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1063 evRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIE---SMEQQLSElKKTLSTVQNEVQEALQRASTALSNEQQARRD 1139
Cdd:COG3096 506 --SQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEfcqRIGQQLDA-AEELEELLAELEAQLEELEEQAAEAVEQRSE 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1140 CQEQAKIAVEAQNKYE-RELMLHAADvEALQAAKEQVSKMTSIRQHLEETTQkaesQLLEckasweeRERVLKDEVSKSV 1218
Cdd:COG3096 583 LRQQLEQLRARIKELAaRAPAWLAAQ-DALERLREQSGEALADSQEVTAAMQ----QLLE-------REREATVERDELA 650
|
410
....*....|....
gi 568907995 1219 SRCEDLEKQNRLLH 1232
Cdd:COG3096 651 ARKQALESQIERLS 664
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
911-1121 |
4.29e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 4.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 911 LNSQIEKLEHEISHLKKKLE----NEVEQRHTLTRNLD------VQLLDTKRQLDTEINlhlNTKELLKNAQKDIATLKQ 980
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKtynkNIEEQRKKNGENIArkqnkyDELVEEAKTIKAEIE---ELTDELLNLVMDIEDPSA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 981 HLN--NME-AQLASQSTQRTGQPG---DRDDVDDLKSQLRQAEEQVNDLKERLKTSTsnvEQYRAMVTSLEDSLNKEKQV 1054
Cdd:PHA02562 256 ALNklNTAaAKIKSKIEQFQKVIKmyeKGGVCPTCTQQISEGPDRITKIKDKLKELQ---HSLEKLDTAIDELEEIMDEF 332
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1055 TEEVHKNIEVRLKESAEFQT--QLEKKLMEVEKEKQELQD---DKRKAIESMEQQLSELKKTLSTVQNEVQE 1121
Cdd:PHA02562 333 NEQSKKLLELKNKISTNKQSliTLVDKAKKVKAAIEELQAefvDNAEELAKLQDELDKIVKTKSELVKEKYH 404
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1156-1696 |
4.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1156 RELMLHAADV-EALQAAKEQVSKMTSIRQHLEETTQKAEsQLLECKASWEERERVLKD----EVSKSVSRCEDLEKQNRL 1230
Cdd:COG4913 214 REYMLEEPDTfEAADALVEHFDDLERAHEALEDAREQIE-LLEPIRELAERYAAARERlaelEYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1231 LHDQIEKLSDKVVTSM--KDAVQAPLNVSLNEEGKSQEQILEI----LRFIRREKEIAETRFEVAQVESLRYRQRVELLE 1304
Cdd:COG4913 293 LEAELEELRAELARLEaeLERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALG 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1305 RELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNkmLREEKERLEQNLQQMQAkvRKLELDiLPLQEANA 1384
Cdd:COG4913 373 LPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRD--LRRELRELEAEIASLER--RKSNIP-ARLLALRD 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1385 ELSEKSGMLQAEKKLLEE--DVK----RWKA------RNQQL---------------INQQKDP---DTEEYRKLLSEKE 1434
Cdd:COG4913 448 ALAEALGLDEAELPFVGEliEVRpeeeRWRGaiervlGGFALtllvppehyaaalrwVNRLHLRgrlVYERVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1435 IHTKRIQQLNEEV--------GRLKAEIARSNA---------------SLT----------------------------N 1463
Cdd:COG4913 528 RPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDyvcvdspeelrrhprAITragqvkgngtrhekddrrrirsryvlgfD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1464 NQNLIQSLREDLSKARTEKEgiqkDLDAKIIDIQEKVKTITQVK-KIGRRYKTQFEELkaqqnkametstqssgDHQEQH 1542
Cdd:COG4913 608 NRAKLAALEAELAELEEELA----EAEERLEALEAELDALQERReALQRLAEYSWDEI----------------DVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1543 ISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTW 1622
Cdd:COG4913 668 REIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1623 KTLALAK----SKITHLSGVKDQLTKEIEELKQRngaLDQQKDELDVRMTALKSQYEGRISRL----------ERELREH 1688
Cdd:COG4913 748 RALLEERfaaaLGDAVERELRENLEERIDALRAR---LNRAEEELERAMRAFNREWPAETADLdadleslpeyLALLDRL 824
|
....*...
gi 568907995 1689 QERHLEQR 1696
Cdd:COG4913 825 EEDGLPEY 832
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
1346-1604 |
4.67e-04 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 44.52 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1346 ETNKMLREEKERLEQNLQQMQAKVRKLELDilpLQEANAELSEksgmLQAEKKLLEEDVKRWKARNQQLiNQQKDPDTEE 1425
Cdd:COG1340 1 SKTDELSSSLEELEEKIEELREEIEELKEK---RDELNEELKE----LAEKRDELNAQVKELREEAQEL-REKRDELNEK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1426 YRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASltnnqnliqslREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQ 1505
Cdd:COG1340 73 VKELKEERDELNEKLNELREELDELRKELAELNKA-----------GGSIDKLRKEIERLEWRQQTEVLSPEEEKELVEK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1506 VKKIGRRYKTQFEELKAQQ------NKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEK 1579
Cdd:COG1340 142 IKELEKELEKAKKALEKNEklkelrAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEA 221
|
250 260
....*....|....*....|....*
gi 568907995 1580 ETEARSLQEQTVQLQSELSRLRQDL 1604
Cdd:COG1340 222 QEKADELHEEIIELQKELRELRKEL 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1563-1698 |
4.75e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 4.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1563 KSLEGQVENLQ---KTLSEKETEARSLQEQTVQLQsELSRLRQDLQDKTTEEQLRQQMNEKTWktLALAKSKITHLSGVK 1639
Cdd:COG4913 221 PDTFEAADALVehfDDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALR--LWFAQRRLELLEAEL 297
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1640 DQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEG----RISRLERELREHQERHLEQRDE 1698
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGnggdRLEQLEREIERLERELEERERR 360
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
741-1080 |
5.76e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 45.29 E-value: 5.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 741 EAKAALKQLQEIFENYKKEKIDS-----EKLQNEQLEKLQEQVTDLRSQntkistqldfaskryemLQDNVEGYRREITS 815
Cdd:PRK11281 91 QAPAKLRQAQAELEALKDDNDEEtretlSTLSLRQLESRLAQTLDQLQN-----------------AQNDLAEYNSQLVS 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 816 LQ---ERNQKLTATTQKQEQIINTMTqdlrgANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESL---------LAEQ 883
Cdd:PRK11281 154 LQtqpERAQAALYANSQRLQQIRNLL-----KGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLegntqlqdlLQKQ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 884 RG-----QNLLLTNLQTIQGI-----LERSETETKQRLNSQIE---------KLEHEISH-LKKKLENEVEQRHTLTRnl 943
Cdd:PRK11281 229 RDyltarIQRLEHQLQLLQEAinskrLTLSEKTVQEAQSQDEAariqanplvAQELEINLqLSQRLLKATEKLNTLTQ-- 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 944 dvQLLDTKRQLDTEINLHLNTKEllknaqkDIATLKQHLN-----NMEAQLASQSTQRTGQPgdrDDVDDLKsqLRQAEe 1018
Cdd:PRK11281 307 --QNLRVKNWLDRLTQSERNIKE-------QISVLKGSLLlsrilYQQQQALPSADLIEGLA---DRIADLR--LEQFE- 371
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1019 qVNDLKERLKTSTSNVEQyramvtsLEDSLNKEkqVTEEVHKNIEVRLKESAEFQTQLEKKL 1080
Cdd:PRK11281 372 -INQQRDALFQPDAYIDK-------LEAGHKSE--VTDEVRDALLQLLDERRELLDQLNKQL 423
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1401-1616 |
6.22e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 44.82 E-value: 6.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1401 EEDVKRWKARNQQLINQQKDpDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSK--A 1478
Cdd:COG3883 15 DPQIQAKQKELSELQAELEA-AQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEraR 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1479 RTEKEGIQKDLDAKII---DIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAmetstqssgdhqeqhisVQEMQELKDTL 1555
Cdd:COG3883 94 ALYRSGGSVSYLDVLLgseSFSDFLDRLSALSKIADADADLLEELKADKAEL-----------------EAKKAELEAKL 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568907995 1556 SQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQ 1616
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1468-1729 |
6.23e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.20 E-value: 6.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1468 IQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKA----------METSTQSSGD 1537
Cdd:pfam10174 242 ISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKesellalqtkLETLTNQNSD 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1538 HQeQHISVqemqeLKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDktteeqLRQQM 1617
Cdd:pfam10174 322 CK-QHIEV-----LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRD------LKDML 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1618 NEKTWKTLALAKsKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALK---SQYEGRISRL----ERELREHQE 1690
Cdd:pfam10174 390 DVKERKINVLQK-KIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEealSEKERIIERLkeqrEREDRERLE 468
|
250 260 270
....*....|....*....|....*....|....*....
gi 568907995 1691 RHLEQRDEPQEPTNKAPEQQRQITLKTTPASGERGIAST 1729
Cdd:pfam10174 469 ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASS 507
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1037-1452 |
6.69e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 6.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1037 YRAMVTSLEDSLNKEKQvteEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDdKRKAIESMEQQLSELKKTLSTVQ 1116
Cdd:COG4717 40 LAFIRAMLLERLEKEAD---ELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1117 NEVqEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIRQHLEETTQKAESQL 1196
Cdd:COG4717 116 EEL-EKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEEL 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1197 LECKASWEE---RERVLKDEVSKSVSRCEDLEKQ------NRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQ 1267
Cdd:COG4717 195 QDLAEELEElqqRLAELEEELEEAQEELEELEEEleqlenELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILT 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1268 ILEIL-----------RFIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMK 1336
Cdd:COG4717 275 IAGVLflvlgllallfLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1337 KTETMNVVMETNKMLREEKERLE-----------------QNLQQMQAKVRKLELDILPLQEAN---------AELSEKS 1390
Cdd:COG4717 355 EAEELEEELQLEELEQEIAALLAeagvedeeelraaleqaEEYQELKEELEELEEQLEELLGELeellealdeEELEEEL 434
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1391 GMLQAEKKLLEEDVKRWKARNQQLINQQKD-PDTEEYRKLLSEKEIHTKRIQQLNEEVGRLKA 1452
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQlEEDGELAELLQELEELKAELRELAEEWAALKL 497
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
106-569 |
6.99e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.10 E-value: 6.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 106 QQSEIDCLKGRHEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQDRnlgiqs 185
Cdd:pfam05483 336 QMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEE------ 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 186 qftraKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDvavKYREKRLEQEKELLH 265
Cdd:pfam05483 410 -----LKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE---EHYLKEVEDLKTELE 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 266 NQNsWLNTELKTKTDELL----ALGREKGNEILELKCNLE---NKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEA 338
Cdd:pfam05483 482 KEK-LKNIELTAHCDKLLlenkELTQEASDMTLELKKHQEdiiNCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQK 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 339 KEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHllQVEESKDQMEKEMle 418
Cdd:pfam05483 561 GDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKK--GSAENKQLNAYEI-- 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 419 KIGKLEKELENAN----DLLSATKRKGAI--LSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQDQLLLEKQENKr 492
Cdd:pfam05483 637 KVNKLELELASAKqkfeEIIDNYQKEIEDkkISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQ- 715
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 493 inkyLDEIVKEVEAKAPILKRQREEYERAQkavASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKD 569
Cdd:pfam05483 716 ----YDKIIEERDSELGLYKNKEQEQSSAK---AALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKD 785
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
92-244 |
7.86e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 44.62 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 92 PKSTQNKLEKFLAEQQSEIDCLKGRHEKFKVESE-----QQyfeiekrLSQSQERLVTETRECQNLRLELEKLNNQVKVL 166
Cdd:PHA02562 253 PSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcptctQQ-------ISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 167 TEKTKELETAQDRNLGIQSQftrakeeLEAEKRDLIRTN----------ERLSQEVEYLTEDVKRLNEKLKESNTTKGEL 236
Cdd:PHA02562 326 EEIMDEFNEQSKKLLELKNK-------ISTNKQSLITLVdkakkvkaaiEELQAEFVDNAEELAKLQDELDKIVKTKSEL 398
|
....*...
gi 568907995 237 QLKLDELQ 244
Cdd:PHA02562 399 VKEKYHRG 406
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
839-1176 |
8.05e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.95 E-value: 8.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 839 QDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEqrgQNLLLTNLQTIQGI-------------LERSE- 904
Cdd:PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDH---LNLVQTALRQQEKIeryqadleeleerLEEQNe 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 905 -----TETKQRLNSQIEKLEHEISHLKKKLEN-----EVEQRHTLTRNLDVQLLDTKRQLDTEINLHL-NTKELLKNAQK 973
Cdd:PRK04863 370 vveeaDEQQEENEARAEAAEEEVDELKSQLADyqqalDVQQTRAIQYQQAVQALERAKQLCGLPDLTAdNAEDWLEEFQA 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 974 DIATLKQHLNNMEAQL------------ASQSTQRTGQPGDRDDVDDL-KSQLRQAEEQVNdLKERLktstsnvEQYRAM 1040
Cdd:PRK04863 450 KEQEATEELLSLEQKLsvaqaahsqfeqAYQLVRKIAGEVSRSEAWDVaRELLRRLREQRH-LAEQL-------QQLRMR 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1041 VTSLEDSLNKEKQVtEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIE---SMEQQLSELK------KT 1111
Cdd:PRK04863 522 LSELEQRLRQQQRA-ERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARErrmALRQQLEQLQariqrlAA 600
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1112 LSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVS 1176
Cdd:PRK04863 601 RAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLS 665
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
530-1141 |
8.89e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 8.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 530 AKLEQAMKEIQRLQEDTDKANKHSSVLERDNQrmeiQIKDLSQQIRVLLMELEEARGNHVIRDEEVSSADISSSSEVISQ 609
Cdd:COG5022 875 QRVELAERQLQELKIDVKSISSLKLVNLELES----EIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEY 950
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 610 HlvSYRNIEELQQQNQRLLFALRELGetrerEEQETTSSKIAELQHKLENSLAELEQLRESRQHQMQLVDSIVRQRDMYR 689
Cdd:COG5022 951 V--KLPELNKLHEVESKLKETSEEYE-----DLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPV 1023
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 690 ILLSQTTGMAIPLQAsslddisllstpkrsSTSQTVSTPAPEPVIDSTEAIEA-KAALKQLQeifenYKKEKIDSEKLQN 768
Cdd:COG5022 1024 EVAELQSASKIISSE---------------STELSILKPLQKLKGLLLLENNQlQARYKALK-----LRRENSLLDDKQL 1083
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 769 EQLEK----------LQEQVTDLRSQNTKISTQ-LDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQKQEQIINTM 837
Cdd:COG5022 1084 YQLEStenllktinvKDLEVTNRNLVKPANVLQfIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGLFWEA 1163
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 838 TqdlrgaNEKLAVAEVRAENLKKE-------KEMLKLSEVRLSQQRESLLAE-----------------QRGQNLLLTNL 893
Cdd:COG5022 1164 N------LEALPSPPPFAALSEKRlyqsalyDEKSKLSSSEVNDLKNELIALfskifsgwprgdklkklISEGWVPTEYS 1237
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 894 QTIQGILERSETETKQRlNSQIEKL-----EHEISHLKKKLENEVEQR--HTLTRNLDVQLLDT--------KRQLDTEI 958
Cdd:COG5022 1238 TSLKGFNNLNKKFDTPA-SMSNEKLlsllnSIDNLLSSYKLEEEVLPAtiNSLLQYINVGLFNAlrtkasslRWKSATEV 1316
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 959 NlhLNTKELL-KNAQKDIATLKQHLNNMEaqlasqSTQRTGQPgDRDDVDDLKSQLRQAEEQVNDLKERLKtstsnveqy 1037
Cdd:COG5022 1317 N--YNSEELDdWCREFEISDVDEELEELI------QAVKVLQL-LKDDLNKLDELLDACYSLNPAEIQNLK--------- 1378
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1038 ramvtSLEDSLNKEKQVTEEVHKNIEVrlkesaefqtqlekklmEVEKEKQELQDD-KRKAIESMEQQLSELKKTLSTVQ 1116
Cdd:COG5022 1379 -----SRYDPADKENNLPKEILKKIEA-----------------LLIKQELQLSLEgKDETEVHLSEIFSEEKSLISLDR 1436
|
650 660
....*....|....*....|....*..
gi 568907995 1117 NEVQ--EALQRASTALSNEQQARRDCQ 1141
Cdd:COG5022 1437 NSIYkeEVLSSLSALLTKEKIALLDRK 1463
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1393-1652 |
9.02e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 9.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1393 LQAEKKLLEEDVKRWKARNQQLINQQKDPDT--EEYRKL--LSEKEIhtkRIQQLNEEVGRLKAEIARsnasLTNNQNLI 1468
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQErrEALQRLaeYSWDEI---DVASAEREIAELEAELER----LDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1469 QSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETST-----QSSGDHQEQHI 1543
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLeerfaAALGDAVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1544 SvqemQELKDTLSQSETKTKSLEGQVENLQKT--------LSEKETEARSLQEqtvqLQSELSRLRQD-LQDKttEEQLR 1614
Cdd:COG4913 768 R----ENLEERIDALRARLNRAEEELERAMRAfnrewpaeTADLDADLESLPE----YLALLDRLEEDgLPEY--EERFK 837
|
250 260 270
....*....|....*....|....*....|....*...
gi 568907995 1615 QQMNEKTwktlalakskITHLSGVKDQLTKEIEELKQR 1652
Cdd:COG4913 838 ELLNENS----------IEFVADLLSKLRRAIREIKER 865
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1056-1712 |
9.06e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 9.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1056 EEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESM--EQQL----SELKKTLSTVQNEVQEALQRASTA 1129
Cdd:pfam01576 4 EEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLqaETELcaeaEEMRARLAARKQELEEILHELESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1130 LSNEQQARRDCQEQAKiaveaqnkyerELMLHAADVEalqaakEQVSKMTSIRQHLEETTQKAESQLleckASWEERERV 1209
Cdd:pfam01576 84 LEEEEERSQQLQNEKK-----------KMQQHIQDLE------EQLDEEEAARQKLQLEKVTTEAKI----KKLEEDILL 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1210 LKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMK-----DAVQAPLNVSLNEEGKSQEQILEILRfiRREKEIAET 1284
Cdd:pfam01576 143 LEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKlknkhEAMISDLEERLKKEEKGRQELEKAKR--KLEGESTDL 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1285 RFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAkTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQ 1364
Cdd:pfam01576 221 QEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNN-ALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGE 299
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1365 MQAKVRKLELDILPLQEANAELSEKSGMLQAE-KKLLEEDVKRWKARNQQLinqqkdpdteeyrkllseKEIHTKRIQQL 1443
Cdd:pfam01576 300 ELEALKTELEDTLDTTAAQQELRSKREQEVTElKKALEEETRSHEAQLQEM------------------RQKHTQALEEL 361
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1444 NEEV---GRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKV----KTITQVKKIGRRYKTQ 1516
Cdd:pfam01576 362 TEQLeqaKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLseseRQRAELAEKLSKLQSE 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1517 FEELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSE----TKTKSLEGQVENLQKTLSEKETEARSLQEQTVQ 1592
Cdd:pfam01576 442 LESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKlnlsTRLRQLEDERNSLQEQLEEEEEAKRNVERQLST 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1593 LQSELSRLRQDLQDKTTE---------------EQLRQQMNEKTWKTLALAKSKiTHLSGVKDQLTKEIEELKQRNGALD 1657
Cdd:pfam01576 522 LQAQLSDMKKKLEEDAGTlealeegkkrlqrelEALTQQLEEKAAAYDKLEKTK-NRLQQELDDLLVDLDHQRQLVSNLE 600
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 568907995 1658 QQK---DELDVRMTALKSQYEGRISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQ 1712
Cdd:pfam01576 601 KKQkkfDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELERT 658
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1480-1690 |
1.02e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1480 TEKEgIQKDLDA----KIIDIQEKV------KTITQVKKIgRRYKTQFEELKAQQNKAMETSTQSSGD---HQEQHISVQ 1546
Cdd:PRK11281 37 TEAD-VQAQLDAlnkqKLLEAEDKLvqqdleQTLALLDKI-DRQKEETEQLKQQLAQAPAKLRQAQAEleaLKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1547 EMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQdktteeQLRQQmnektwktla 1626
Cdd:PRK11281 115 RETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ------QIRNL---------- 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1627 LAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDEL---DVRMTALKSQYE---GRISRLERELREHQE 1690
Cdd:PRK11281 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLegnTQLQDLLQKQRDyltARIQRLEHQLQLLQE 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1576-1712 |
1.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1576 LSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTW---------KTLALAKSKITHL---SGVKDQLT 1643
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWdeidvasaeREIAELEAELERLdasSDDLAALE 691
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568907995 1644 KEIEELKQRNGALDQQKDELDVRMTALKSQyegrISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQ 1712
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERFA 756
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1379-1619 |
1.12e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1379 LQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEkeihtkRIQQLNEEVGRLKAEIARSN 1458
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQ------QLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1459 ASLTNNQNLIQSLREDLSkARTEKEGIQkDLDAKIIDIQekvktiTQVKKIGRRYKTQFEELKAQQNKAMETSTQSSgdh 1538
Cdd:COG3206 240 ARLAALRAQLGSGPDALP-ELLQSPVIQ-QLRAQLAELE------AELAELSARYTPNHPDVIALRAQIAALRAQLQ--- 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1539 qeqhisvqemQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQeqtvQLQSELSRLRQDLQDKTTE-EQLRQQM 1617
Cdd:COG3206 309 ----------QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELP----ELEAELRRLEREVEVARELyESLLQRL 374
|
..
gi 568907995 1618 NE 1619
Cdd:COG3206 375 EE 376
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
739-1373 |
1.23e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 739 AIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQE 818
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 819 RNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQG 898
Cdd:TIGR00618 376 TLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 899 ILERSETETKQRLNSQIEKLEHEISHLKKKLE--NEVEQRHTLTRNLDVQLLDTKRQLDTEINLHLNTKELLKNAQKDIA 976
Cdd:TIGR00618 456 LEKIHLQESAQSLKEREQQLQTKEQIHLQETRkkAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQ 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 977 TLKQHLNNMEaqlasqstqrtgqpgdrddvdDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTE 1056
Cdd:TIGR00618 536 TYAQLETSEE---------------------DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1057 EVHKNIEVRLKEsaEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQA 1136
Cdd:TIGR00618 595 RLQDLTEKLSEA--EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPK 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1137 RRDCQEQAKiaveaqnkyerelmlhaadveaLQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVlkdeVSK 1216
Cdd:TIGR00618 673 ELLASRQLA----------------------LQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEI----ENA 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1217 SVSRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAplnvslnEEGKSQEQILEILRFIRREKEIAETRFEVAQVESLRY 1296
Cdd:TIGR00618 727 SSSLGSDLAAREDALNQSLKELMHQARTVLKARTEA-------HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1297 RQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQnLQQMQAKVRKLE 1373
Cdd:TIGR00618 800 LLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQ-LTQEQAKIIQLS 875
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
201-941 |
1.26e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.33 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 201 LIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYR-EKRLEQEKELLHNQNS---WLN--TE 274
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKlEEEIQENKDLIKENNAtrhLCNllKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 275 LKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNgLKTSNEHLQKHVedlltKLKEAKEQQASMEEKFHNELN 354
Cdd:pfam05483 163 TCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELR-VQAENARLEMHF-----KLKEDHEKIQHLEEEYKKEIN 236
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 355 AHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEM------LEKIGKLEKELE 428
Cdd:pfam05483 237 DKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELedikmsLQRSMSTQKALE 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 429 naNDLLSATKRKGAILSEEELAAMSPTAAAVAKivkpGMKLTELYNAYVETQDQLLLEKQENKRINKYLDEIVKEVEAKA 508
Cdd:pfam05483 317 --EDLQIATKTICQLTEEKEAQMEELNKAKAAH----SFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKS 390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 509 PILkrqrEEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEARGNH 588
Cdd:pfam05483 391 SEL----EEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSE 466
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 589 VIRDEEVSSADISSSSEVISQHLVSyRNIEELQQQNQRLLFALRELGETREREEQETTSSKIAElqhklENSLAELEQLR 668
Cdd:pfam05483 467 EHYLKEVEDLKTELEKEKLKNIELT-AHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQE-----ERMLKQIENLE 540
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 669 ESrqhQMQLVDSIVRQRDMYRillsqttgmaiplqasslddisllstPKRSSTSQTVSTPAPEPVIDSTEAIEAKAALKQ 748
Cdd:pfam05483 541 EK---EMNLRDELESVREEFI--------------------------QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 749 LQEIFENYKKEKIDseklQNEQLEKLQEQVTDLRSQNTKISTQLDFaskrYEMLQDNVEgyrREITSLQERNQKLTATTQ 828
Cdd:pfam05483 592 LENKCNNLKKQIEN----KNKNIEELHQENKALKKKGSAENKQLNA----YEIKVNKLE---LELASAKQKFEEIIDNYQ 660
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 829 KQEQIINTMTQDLRGANEKLAVAEVRAENLKKE---------KEMLKLSEVRLSQQREslLAEQRGQNLLLTNLQtiqgi 899
Cdd:pfam05483 661 KEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEidkrcqhkiAEMVALMEKHKHQYDK--IIEERDSELGLYKNK----- 733
|
730 740 750 760
....*....|....*....|....*....|....*....|..
gi 568907995 900 lERSETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTR 941
Cdd:pfam05483 734 -EQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKM 774
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1004-1238 |
1.28e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1004 DDVDDLKSQLRQAEEQVNDLKERLKtstsnveqyramvtsledSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEV 1083
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELA------------------ALKKEEKALLKQLAALERRIAALARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1084 EKEKQELQDDKRKAIESMEQQLSELKKTLSTVQ-NEVQEALQRASTALSNEQQARRdcQEQAKIAVEAQNKYERELmlhA 1162
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRR--LQYLKYLAPARREQAEEL---R 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 1163 ADVEALQAAKEQVSKMTSIRQHLEETTQKAESQLLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQIEKL 1238
Cdd:COG4942 157 ADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
653-980 |
1.29e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.13 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 653 LQHKLENSLAELEQLRESRQHQMQLVDSIVR--------QRDMYRILLSQTTGMAIPLQASSLDDISLLSTPKRS---ST 721
Cdd:PRK11281 61 VQQDLEQTLALLDKIDRQKEETEQLKQQLAQapaklrqaQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDqlqNA 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 722 SQTVSTPAPEPVIDSTEAIEAKAAL----KQLQEIFENYKKEKIDSEKLQNEQLEKLQ-EQV-----TDLRSQNTKISTQ 791
Cdd:PRK11281 141 QNDLAEYNSQLVSLQTQPERAQAALyansQRLQQIRNLLKGGKVGGKALRPSQRVLLQaEQAllnaqNDLQRKSLEGNTQ 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 792 L-DFASKRYEMLQDNVEGYRREITSLQER-NQK-LTATTQKQEQIINtmTQDLRGANEKLAVAEVRAENLKKEKEMLKLS 868
Cdd:PRK11281 221 LqDLLQKQRDYLTARIQRLEHQLQLLQEAiNSKrLTLSEKTVQEAQS--QDEAARIQANPLVAQELEINLQLSQRLLKAT 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 869 EV--RLSQ-------------QRESLLAEQ----RG----------QNLLLTNLQTIQGI--------LERSETeTKQR- 910
Cdd:PRK11281 299 EKlnTLTQqnlrvknwldrltQSERNIKEQisvlKGslllsrilyqQQQALPSADLIEGLadriadlrLEQFEI-NQQRd 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 911 ----LNSQIEKLEheishlkKKLENEV--EQRHTLTrnldvQLLDTKR------------QLDTEINLHLNTKELLKNAQ 972
Cdd:PRK11281 378 alfqPDAYIDKLE-------AGHKSEVtdEVRDALL-----QLLDERRelldqlnkqlnnQLNLAINLQLNQQQLLSVSD 445
|
....*...
gi 568907995 973 KDIATLKQ 980
Cdd:PRK11281 446 SLQSTLTQ 453
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
107-483 |
1.42e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 1.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 107 QSEIDCLKGRHEkfkvESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKEL-ETAQDRNlgiqS 185
Cdd:pfam10174 344 QTEVDALRLRLE----EKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLqEQLRDKD----K 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 186 QFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDvKRLNEKLKESNTTkgELQLKLDELQASDVAVKYREKRLEQEKELLH 265
Cdd:pfam10174 416 QLAGLKERVKSLQTDSSNTDTALTTLEEALSEK-ERIIERLKEQRER--EDRERLEELESLKKENKDLKEKVSALQPELT 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 266 NQNSWLNtELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNglktsnehlqkhvedlltklkeaKEQQASM 345
Cdd:pfam10174 493 EKESSLI-DLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLK-----------------------KAHNAEE 548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 346 EEKFHNELNAHIK-LSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDhllqveeskdqMEKEMLEKIGKLE 424
Cdd:pfam10174 549 AVRTNPEINDRIRlLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAE-----------LESLTLRQMKEQN 617
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568907995 425 KELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIvkpgmKLTELYNAYVETQDQL 483
Cdd:pfam10174 618 KKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQL-----QLEELMGALEKTRQEL 671
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1332-1676 |
1.54e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1332 EELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEE--------- 1402
Cdd:PRK04863 355 ADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERakqlcglpd 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1403 -DVKRWKARNQQLINQQKDPDTEEY---RKLLSEKEIHTkRIQQLNEEVGRLKAEIARSNASltnnqnliQSLREDLSKA 1478
Cdd:PRK04863 435 lTADNAEDWLEEFQAKEQEATEELLsleQKLSVAQAAHS-QFEQAYQLVRKIAGEVSRSEAW--------DVARELLRRL 505
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1479 RTekegiQKDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHisvQEMQELKDTLSQS 1558
Cdd:PRK04863 506 RE-----QRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELE---ARLESLSESVSEA 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1559 ETKTKSLEGQVENLQKTLSEKETEArslqEQTVQLQSELSRLR----QDLQDKTTEEQLRQQMNEKTwKTLALAKSKITH 1634
Cdd:PRK04863 578 RERRMALRQQLEQLQARIQRLAARA----PAWLAAQDALARLReqsgEEFEDSQDVTEYMQQLLERE-RELTVERDELAA 652
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568907995 1635 lsgVKDQLTKEIEELKQRNGALDQqkdeldvRMTALKSQYEG 1676
Cdd:PRK04863 653 ---RKQALDEEIERLSQPGGSEDP-------RLNALAERFGG 684
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1003-1619 |
1.58e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1003 RDDVDDLKSQLRQAEEQvnDLKERLKTstsnVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRLKESAEFQTQLEkklmE 1082
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEK--DLHERLNG----LESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE----T 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1083 VEKEKQELQDDKRKAiESMEQQLSElkktlstvqnEVQEALQRASTALSNEQQARRDCQeqakiaveaqnkyerelmLHA 1162
Cdd:PRK02224 256 LEAEIEDLRETIAET-EREREELAE----------EVRDLRERLEELEEERDDLLAEAG------------------LDD 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1163 ADVEALQAAKEQvskmtsirqhLEETTQKAESQLLECKASWEErervLKDEVSKSVSRCEDLEKQNRLLHDQIEKLsDKV 1242
Cdd:PRK02224 307 ADAEAVEARREE----------LEDRDEELRDRLEECRVAAQA----HNEEAESLREDADDLEERAEELREEAAEL-ESE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1243 VTSMKDAVqaplnvslneeGKSQEQILEilrfIRREKEIAETRFEVAQVESLRYRQRVELLERELQELQDSLNVEREKVQ 1322
Cdd:PRK02224 372 LEEAREAV-----------EDRREEIEE----LEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1323 VTAKTMAQHEELM---KKTETMNVV-----METNKMLREEKERLEQNLQQMQAKVRKLELDI---LPLQEANAELSEKSG 1391
Cdd:PRK02224 437 TARERVEEAEALLeagKCPECGQPVegsphVETIEEDRERVEELEAELEDLEEEVEEVEERLeraEDLVEAEDRIERLEE 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1392 MLQAEKKLLEEDVKRWKARNQQLinQQKDPDTEEYRkllSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSL 1471
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERA--EELRERAAELE---AEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESL 591
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1472 RedlsKARTEKEGIQkDLDAKIIDIQEKVKTITQVKKIGRRYKTQFEELKAQQNKAMETS--TQSSGDHQEQHISVQEMQ 1549
Cdd:PRK02224 592 E----RIRTLLAAIA-DAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAriEEAREDKERAEEYLEQVE 666
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1550 ELKDTLSQSETKTKSLEGQVENLQKTLSE-----KETEAR-----SLQEQTVQLQSELSRLRQDLQDKTTeEQLRQQMNE 1619
Cdd:PRK02224 667 EKLDELREERDDLQAEIGAVENELEELEElrerrEALENRvealeALYDEAEELESMYGDLRAELRQRNV-ETLERMLNE 745
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1318-1683 |
1.67e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1318 REKVQVTAKTMAQHEELMkkTETMNVVmeTNKMLREEKER---LEQNL---QQMQAKVRKLELDilplQEANAELSEKSG 1391
Cdd:PRK04863 246 LEAIRVTQSDRDLFKHLI--TESTNYV--AADYMRHANERrvhLEEALelrRELYTSRRQLAAE----QYRLVEMARELA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1392 MLQAEKKLLEEDVKRWKARNQqlinqqkdpdteeyrkLLSEKEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSL 1471
Cdd:PRK04863 318 ELNEAESDLEQDYQAASDHLN----------------LVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEEN 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1472 REDLSKARTEkegiQKDLDAKIIDIQEKVKtITQVKKIGRRYKTQFEELKAQQNKAMETSTQSSGDHQEQHisVQEMQEL 1551
Cdd:PRK04863 382 EARAEAAEEE----VDELKSQLADYQQALD-VQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEF--QAKEQEA 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1552 KDTLSQSETK-----------------TKSLEGQVENLQ-----KTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTT 1609
Cdd:PRK04863 455 TEELLSLEQKlsvaqaahsqfeqayqlVRKIAGEVSRSEawdvaRELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQR 534
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568907995 1610 EEQLRQQMNEKTWKTLALAkskithlsgvkDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYE---GRISRLER 1683
Cdd:PRK04863 535 AERLLAEFCKRLGKNLDDE-----------DELEQLQEELEARLESLSESVSEARERRMALRQQLEqlqARIQRLAA 600
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
746-1063 |
1.81e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 746 LKQLQEIFENYKKEKIDSEKLQNEQL-------EKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQE 818
Cdd:PRK01156 372 IESLKKKIEEYSKNIERMSAFISEILkiqeidpDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 819 RNQ----KLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAE-------NLKKEKEMLKLSEVRLSQQRESLLAEQRGQ- 886
Cdd:PRK01156 452 QSVcpvcGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKdidekivDLKKRKEYLESEEINKSINEYNKIESARADl 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 887 -----------------NLLLTNLQTIQ-GILERSETE----TKQRLNSQIEKLEHEISHLKKKLeNEVEQRhtlTRNLD 944
Cdd:PRK01156 532 edikikinelkdkhdkyEEIKNRYKSLKlEDLDSKRTSwlnaLAVISLIDIETNRSRSNEIKKQL-NDLESR---LQEIE 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 945 VQLLDTKRQLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEEQVNDLK 1024
Cdd:PRK01156 608 IGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSR 687
|
330 340 350
....*....|....*....|....*....|....*....
gi 568907995 1025 ERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIE 1063
Cdd:PRK01156 688 KALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1438-1716 |
1.91e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1438 KRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQVKKIGRRYKtqf 1517
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYL--- 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1518 EELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSEL 1597
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1598 SRLRQdlqdkttEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDVRMTALKSQYEGR 1677
Cdd:pfam02463 310 VDDEE-------KLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270
....*....|....*....|....*....|....*....
gi 568907995 1678 ISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQITLK 1716
Cdd:pfam02463 383 SERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLL 421
|
|
| SerS |
COG0172 |
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase ... |
1468-1576 |
1.99e-03 |
|
Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Seryl-tRNA synthetase is part of the Pathway/BioSystem: Aminoacyl-tRNA synthetases
Pssm-ID: 439942 [Multi-domain] Cd Length: 421 Bit Score: 43.07 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1468 IQSLREDLS--KARTEKEGIQKDLDaKIIDIQEKVKTItqvkkigrryKTQFEELKAQQNKAmetSTQ-----SSGDHQE 1540
Cdd:COG0172 4 IKLIRENPEavKEALAKRGFDLDVD-ELLELDEERREL----------QTEVEELRAERNAL---SKEigkakKKGEEAE 69
|
90 100 110
....*....|....*....|....*....|....*.
gi 568907995 1541 QHIsvQEMQELKDTLSQSETKTKSLEGQVENLQKTL 1576
Cdd:COG0172 70 ALI--AEVKELKEEIKELEEELKELEEELDELLLSI 103
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-347 |
2.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 84 ERPELNKlpksTQNKLEKFLAEQQSEIDCLkGRHEKFKVESEQQYFEIEKRLSQSQERLvtETRECQNLRLELEKLNNQV 163
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDL-GEEEQLRVKEKIGELEAEIASLERSIAE--KERELEDAEERLAKLEAEI 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 164 KVLTEKTKELETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESNTTKGELQLKLDEL 243
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 244 QAsdvavkyREKRLEQEKELLHNQnswlNTELKTKTDELLALGREKGNEILELKCNLENKKEEVLRLEEQMNGLKTSNEH 323
Cdd:TIGR02169 412 QE-------ELQRLSEELADLNAA----IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
|
250 260
....*....|....*....|....
gi 568907995 324 LQKHVEDLLTKLKEAKEQQASMEE 347
Cdd:TIGR02169 481 VEKELSKLQRELAEAEAQARASEE 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
506-686 |
2.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 506 AKAPILKRQREEYERAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMELEEAR 585
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 586 GNHVIRDEEVSSADISS-------------SSEVISQHLVSYRNIEELQQQNQRLLFALRElgetrereeqetTSSKIAE 652
Cdd:COG4942 97 AELEAQKEELAELLRALyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRA------------DLAELAA 164
|
170 180 190
....*....|....*....|....*....|....
gi 568907995 653 LQHKLENSLAELEQLRESRQHQMQLVDSIVRQRD 686
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALKAERQ 198
|
|
| KpsE |
COG3524 |
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis]; |
1010-1145 |
2.26e-03 |
|
Capsule polysaccharide export protein KpsE/RkpR [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442746 [Multi-domain] Cd Length: 370 Bit Score: 42.92 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1010 KSQLRQAEEQVNDLKERLKTSTSNVEQYRamvtsledslNKEKQVTEEvhKNIEVRLKESAEFQTQlekkLMEVEKEKQE 1089
Cdd:COG3524 176 EDAVRFAEEEVERAEERLRDAREALLAFR----------NRNGILDPE--ATAEALLQLIATLEGQ----LAELEAELAA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1090 LQDDKRKA----------IESMEQQLSELK---------KTLSTV-------QNEVQEALQRASTALSNEQQARRDCQEQ 1143
Cdd:COG3524 240 LRSYLSPNspqvrqlrrrIAALEKQIAAERarltgasggDSLASLlaeyerlELEREFAEKAYTSALAALEQARIEAARQ 319
|
..
gi 568907995 1144 AK 1145
Cdd:COG3524 320 QR 321
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
151-432 |
2.34e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.59 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 151 NLRLELEKLNNQVKVLTEKTKELETAQDrnlgiqsQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKESN 230
Cdd:COG1340 5 ELSSSLEELEEKIEELREEIEELKEKRD-------ELNEELKELAEKRDELNAQVKELREEAQELREKRDELNEKVKELK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 231 TTKGELQLKLDELqaSDVAVKYREKRLEQEKEllhnqnswlNTELKTKTDELLALGREKGNEILELKcnlENKK--EEVL 308
Cdd:COG1340 78 EERDELNEKLNEL--REELDELRKELAELNKA---------GGSIDKLRKEIERLEWRQQTEVLSPE---EEKElvEKIK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 309 RLEEQMNGLKTSNEhLQKHVEDLLTKLKEAKEQQasmeEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLL 388
Cdd:COG1340 144 ELEKELEKAKKALE-KNEKLKELRAELKELRKEA----EEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEI 218
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568907995 389 KEAGEANKTIQDHLLQVEESKDQMEKEMLEKIGKLEKELENAND 432
Cdd:COG1340 219 VEAQEKADELHEEIIELQKELRELRKELKKLRKKQRALKREKEK 262
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
961-1146 |
2.47e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 961 HLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQpgDRDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAM 1040
Cdd:COG3096 943 YLQAKEQQRRLKQQIFALSEVVQRRPHFSYEDAVGLLGE--NSDLNEKLRARLEQAEEARREAREQLRQAQAQYSQYNQV 1020
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1041 VTSLEDSLNKEKQVTEEVH---KNIEVRLKESAEFQTQLekklmevekEKQELQDdkrkAIESMEQQLSELKKTLSTVQN 1117
Cdd:COG3096 1021 LASLKSSRDAKQQTLQELEqelEELGVQADAEAEERARI---------RRDELHE----ELSQNRSRRSQLEKQLTRCEA 1087
|
170 180
....*....|....*....|....*....
gi 568907995 1118 EVQEALQRASTALSNEQQARRDCqEQAKI 1146
Cdd:COG3096 1088 EMDSLQKRLRKAERDYKQEREQV-VQAKA 1115
|
|
| AAA_13 |
pfam13166 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
216-428 |
2.49e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease.
Pssm-ID: 463796 [Multi-domain] Cd Length: 712 Bit Score: 43.13 E-value: 2.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 216 TEDVKRLNEKLKESNTTKGELQLKLDELqaSDVAVKYREKRLEQEKelLHNQNSWLNTELKTKTDELLALGRE--KGNEI 293
Cdd:pfam13166 282 TEFQNRLQKLIEKVESAISSLLAQLPAV--SDLASLLSAFELDVED--IESEAEVLNSQLDGLRRALEAKRKDpfKSIEL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 294 LELKCNLENKKEEVLRLEEQMNglktsnEHlQKHVEDLLTKLKEAKEQ-QASMEEKFHNELNahiKLSNLYKSAADDSEA 372
Cdd:pfam13166 358 DSVDAKIESINDLVASINELIA------KH-NEITDNFEEEKNKAKKKlRLHLVEEFKSEID---EYKDKYAGLEKAINS 427
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 373 KSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEEskdqMEKEmLEKIGKLEKELE 428
Cdd:pfam13166 428 LEKEIKNLEAEIKKLREEIKELEAQLRDHKPGADE----INKL-LKAFGFGELELS 478
|
|
| DivIVA |
COG3599 |
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle ... |
1002-1110 |
3.09e-03 |
|
Cell division septum initiation protein DivIVA, interacts with FtsZ and MinD [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442818 [Multi-domain] Cd Length: 125 Bit Score: 39.84 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1002 DRDDVDD----LKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVhknievrlKESAEfqTQLE 1077
Cdd:COG3599 21 DEDEVDEfldeVAEDYERLIRENKELKEKLEELEEELEEYRELEETLQKTLVVAQETAEEV--------KENAE--KEAE 90
|
90 100 110
....*....|....*....|....*....|...
gi 568907995 1078 KKLMEVEKEKQELQDDKRKAIESMEQQLSELKK 1110
Cdd:COG3599 91 LIIKEAELEAEKIIEEAQEKARKIVREIEELKR 123
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
818-1033 |
3.22e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.98 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 818 ERNQKLTATTQKQEQIINTMTQDLRGANEKLAVAEVRAENLKKE------KEMLKLSEVRLSQQRESLLAEQ-------- 883
Cdd:PRK11281 66 EQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDndeetrETLSTLSLRQLESRLAQTLDQLqnaqndla 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 884 --------------RGQNLLLTNLQTIQGI---LERSETETKQRLNSQIEKLEHEISHLKKKLENeveQRHTLTRNLDVQ 946
Cdd:PRK11281 146 eynsqlvslqtqpeRAQAALYANSQRLQQIrnlLKGGKVGGKALRPSQRVLLQAEQALLNAQNDL---QRKSLEGNTQLQ 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 947 LLDTKrQLDtEINLHLNtkellkNAQKDIATLKQHLNN---------MEAQLASQSTQRTGQpgdrddvddlkSQLRQAE 1017
Cdd:PRK11281 223 DLLQK-QRD-YLTARIQ------RLEHQLQLLQEAINSkrltlsektVQEAQSQDEAARIQA-----------NPLVAQE 283
|
250
....*....|....*..
gi 568907995 1018 EQVN-DLKERLKTSTSN 1033
Cdd:PRK11281 284 LEINlQLSQRLLKATEK 300
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1385-1610 |
3.32e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.69 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1385 ELSEKSGMLQAEKKLLEEDVKRWKaRNQQLINQQKDPDTEEYRKLLSEkeiHTKRIQQLNEEVGRLKAEIARSNASLTNN 1464
Cdd:PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYN-KNIEEQRKKNGENIARKQNKYDE---LVEEAKTIKAEIEELTDELLNLVMDIEDP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1465 QNLIQSLREDLSKARTEKEGIQKDL-------------------DAKIIDIQEKVKTIT-QVKKIgrryKTQFEELKAQQ 1524
Cdd:PHA02562 254 SAALNKLNTAAAKIKSKIEQFQKVIkmyekggvcptctqqisegPDRITKIKDKLKELQhSLEKL----DTAIDELEEIM 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1525 NKAMETSTqssgdhqeqhisvqEMQELKDTLSQSETKTKSLEGQVENLQKTLSEketearsLQEQTVQLQSELSRLRQDL 1604
Cdd:PHA02562 330 DEFNEQSK--------------KLLELKNKISTNKQSLITLVDKAKKVKAAIEE-------LQAEFVDNAEELAKLQDEL 388
|
....*.
gi 568907995 1605 QDKTTE 1610
Cdd:PHA02562 389 DKIVKT 394
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
365-575 |
3.41e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 365 SAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMeKEMLEKIGKLEKELENANDLLSATKRKGAIL 444
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI-AALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 445 S------EEELAAMSPTAAAVAKIVKPGMKL-----------TELYNAYVETQDQLLlekqenkrinKYLDEIVKEVEAK 507
Cdd:COG4942 96 RaeleaqKEELAELLRALYRLGRQPPLALLLspedfldavrrLQYLKYLAPARREQA----------EELRADLAELAAL 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568907995 508 APILKRQREEYERAQKAVASLSAKLEQAMKE----IQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIR 575
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAErqklLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1546-1764 |
3.60e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1546 QEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLR------------------------ 1601
Cdd:COG3883 30 AELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERReelgeraralyrsggsvsyldvll 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1602 --QDLQDKTTEEQLRQQMNEKTWKTLALAKSKITHLSGVKDQLTKEIEELKQRNGALDQQKDELDvrmtALKSQYEGRIS 1679
Cdd:COG3883 110 gsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELE----AQQAEQEALLA 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1680 RLERELREHQERHLEQRDEPQEPTNKAPEQQRQITLKTTPASGERGIASTSDPPTANIKPTPVVSTPSKVTAAAMAGNKS 1759
Cdd:COG3883 186 QLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAGAAAGSAGAA 265
|
....*
gi 568907995 1760 TPRAS 1764
Cdd:COG3883 266 GAAAG 270
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
1353-1700 |
3.67e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.57 E-value: 3.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1353 EEKERLEQNLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKdpdteEYRKLLSE 1432
Cdd:pfam07888 10 EEESHGEEGGTDMLLVVPRAELLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRR-----ELESRVAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1433 KEIHTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEGIQKDLDAKIIDIQEKVKTITQ-VKKIGR 1511
Cdd:pfam07888 85 LKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKErAKKAGA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1512 RYKTQFEELKAQQNKAMETstqssgdHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLS-----EKETEA--- 1583
Cdd:pfam07888 165 QRKEEEAERKQLQAKLQQT-------EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTtahrkEAENEAlle 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1584 --RSLQEQTVQLQSELSRLRQDL-----QDKTTEEQLRQQMNEKTWKTLALAKSKItHLSGVKDQLTKEIEELkQRNGAL 1656
Cdd:pfam07888 238 elRSLQERLNASERKVEGLGEELssmaaQRDRTQAELHQARLQAAQLTLQLADASL-ALREGRARWAQERETL-QQSAEA 315
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568907995 1657 DQQkdeldvrmtalksqyegRISRLERELREHQERHLEQRDEPQ 1700
Cdd:pfam07888 316 DKD-----------------RIEKLSAELQRLEERLQEERMERE 342
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
904-1602 |
3.78e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 3.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 904 ETETKQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDVQLLD-TKRQLDTEINLHLNTKELLKNAQKDiaTLKQHL 982
Cdd:TIGR00618 185 EFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHlREALQQTQQSHAYLTQKREAQEEQL--KKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 983 NNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAEE-----QVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEE 1057
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEETQERINRARKAAPLAAHikavtQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1058 VHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKR-----KAIESMEQQLSELKKTLSTVQNEVQEALQRAStalsn 1132
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHihtlqQQKTTLTQKLQSLCKELDILQREQATIDTRTS----- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1133 EQQARRDCQEQAKIAVEAQNKYERELMLHAADVeaLQAAKEQVSKMTSIRQHLeettqKAESQLLECKASWEERERVLKD 1212
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCAAAITCT--AQCEKLEKIHLQESAQSL-----KEREQQLQTKEQIHLQETRKKA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1213 EVSKsvsRCEDLEKQNRLLHDQIEKLSDKVVTSMKDAVQAPLNVSLNEEGKSQEQILEILRFIRREKEIAETRFEvAQVE 1292
Cdd:TIGR00618 491 VVLA---RLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK-EQMQ 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1293 SLRyrQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKL 1372
Cdd:TIGR00618 567 EIQ--QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALK 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1373 ELDILPLQE--ANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKDPDTEEYRKLLSEKEIHT------KRIQQLN 1444
Cdd:TIGR00618 645 LTALHALQLtlTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELEThieeydREFNEIE 724
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1445 EEVGRLKAEIARSNASLTNNQNLIQSLREDLSKARTEKEgiQKDLDAKIIDIQekvkTITQVKKIGRRYKTQFEELKA-- 1522
Cdd:TIGR00618 725 NASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAH--FNNNEEVTAALQ----TGAELSHLAAEIQFFNRLREEdt 798
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1523 QQNKAMETSTQSSGDHQEQ------HISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKEtEARSLQEQTVQLQSE 1596
Cdd:TIGR00618 799 HLLKTLEAEIGQEIPSDEDilnlqcETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLA-QLTQEQAKIIQLSDK 877
|
....*.
gi 568907995 1597 LSRLRQ 1602
Cdd:TIGR00618 878 LNGINQ 883
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
116-451 |
4.41e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.63 E-value: 4.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 116 RHEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEktkELETAQDRnLGIQSQFTRAKEELE 195
Cdd:COG3096 275 RHANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQ---DYQAASDH-LNLVQTALRQQEKIE 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 196 AEKRDLIRTNERLSQEVEYLTEdvkrLNEKLKESNTTKGELQLKLDEL--------QASDV----AVKYRE--KRLEQEK 261
Cdd:COG3096 351 RYQEDLEELTERLEEQEEVVEE----AAEQLAEAEARLEAAEEEVDSLksqladyqQALDVqqtrAIQYQQavQALEKAR 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 262 ELL-------HNQNSWLNT---ELKTKTDELLALgREKgneiLELKCNLENKKEEVLRLEEQMNG--------------L 317
Cdd:COG3096 427 ALCglpdltpENAEDYLAAfraKEQQATEEVLEL-EQK----LSVADAARRQFEKAYELVCKIAGeversqawqtarelL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 318 KT--SNEHLQKHVEDLLTKLKEAkEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEAN 395
Cdd:COG3096 502 RRyrSQQALAQRLQQLRAQLAEL-EQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQR 580
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568907995 396 KTIQDHLLQVEESKDQMEK---------EMLEKIG-KLEKELENANDLLSA-----TKRKGAILSEEELAA 451
Cdd:COG3096 581 SELRQQLEQLRARIKELAArapawlaaqDALERLReQSGEALADSQEVTAAmqqllEREREATVERDELAA 651
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1518-1742 |
4.61e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1518 EELKAQQNKAMETSTQSSGDHQEQHISVQEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSEL 1597
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1598 SRLRQDLQDKTTEEQLRQQMNEKTWKTLA--------LAKSKITHLSGVKDQLtKEIEELKQRNGALDQQKDELDVRMTA 1669
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVrrlqylkyLAPARREQAEELRADL-AELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568907995 1670 LKSQYEGRISRLERELREHQERHLEQRDEPQEPTNKAPEQQRQITLKTTPASGERGIASTSDPPTANIK-PTPV 1742
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKlPWPV 259
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
206-427 |
4.92e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 206 ERLSQEVEYLTEDVKRLnEKLKESNTTKGELQLKLDELQASDVAVKYreKRLEQEKELLHNQNSWLNTELKTKTDELLAL 285
Cdd:COG4913 238 ERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 286 GREkgneilelkcnLENKKEEVLRLEEQMNG--------LKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHI 357
Cdd:COG4913 315 EAR-----------LDALREELDELEAQIRGnggdrleqLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 358 KLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEMLEKIGKLEKEL 427
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
875-1509 |
4.95e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.20 E-value: 4.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 875 QRESLLAEQRGQNLLLTNLQTIQGILE--RSETETKQRLNSQIEKLEHEISHLKKKLENEvEQRHTLTrnldvqlLDTKR 952
Cdd:PRK01156 150 QRKKILDEILEINSLERNYDKLKDVIDmlRAEISNIDYLEEKLKSSNLELENIKKQIADD-EKSHSIT-------LKEIE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 953 QLDTEINLHLNTKELLKNAQKDIATLKQHLNNMEAQLASQSTQRTGQPGDRDDVDDLKSQLRQAE-EQVNDLKERLK--- 1028
Cdd:PRK01156 222 RLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIInDPVYKNRNYINdyf 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1029 TSTSNVEQYRAMVTSLEDSLNKekqvTEEVHKNIEVRLKESAEFQtQLEKKLMEVEKEKQELQDDKR------KAIESME 1102
Cdd:PRK01156 302 KYKNDIENKKQILSNIDAEINK----YHAIIKKLSVLQKDYNDYI-KKKSRYDDLNNQILELEGYEMdynsylKSIESLK 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1103 QQLSELKKTLSTVQNEVQEALQRASTalsneqqarrdcqeQAKIAVEAQNKYERELMLHAADVEALQAAKEqvskmtSIR 1182
Cdd:PRK01156 377 KKIEEYSKNIERMSAFISEILKIQEI--------------DPDAIKKELNEINVKLQDISSKVSSLNQRIR------ALR 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1183 QHLEETTQKAE-----SQLLECKASW-EERERVLKDEVSKSVSRcedLEKQNRLLHDQIEKLSDKVV--TSMKDAVQA-P 1253
Cdd:PRK01156 437 ENLDELSRNMEmlngqSVCPVCGTTLgEEKSNHIINHYNEKKSR---LEEKIREIEIEVKDIDEKIVdlKKRKEYLESeE 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1254 LNVSLNEEGKSQEQILEILRFIRREKEIAETRFEVAQVESlRYRqrvellerelqelqdSLNVE--REKVQVTAKTMAQH 1331
Cdd:PRK01156 514 INKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKN-RYK---------------SLKLEdlDSKRTSWLNALAVI 577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1332 EelmkktetmNVVMETNkmlREEKERLEQNLQQMQAKVRKLELDILPLQEAN----AELSEKSGMLQAEKKLLEEDvKRW 1407
Cdd:PRK01156 578 S---------LIDIETN---RSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIdksiREIENEANNLNNKYNEIQEN-KIL 644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1408 KARNQQLINQQKDPDTEEYRKLLSEKEIhTKRIQQLNEEVGRLKAEIARSNASLTNNQNLIQSLREDLSKartekegiqk 1487
Cdd:PRK01156 645 IEKLRGKIDNYKKQIAEIDSIIPDLKEI-TSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINE---------- 713
|
650 660
....*....|....*....|..
gi 568907995 1488 dLDAKIIDIQekvKTITQVKKI 1509
Cdd:PRK01156 714 -LSDRINDIN---ETLESMKKI 731
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1008-1170 |
5.06e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 5.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1008 DLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEVHKNIEVRlkesaefqtQLEKKLMEVEKEK 1087
Cdd:COG3206 209 DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQ---------QLRAQLAELEAEL 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1088 QELQ---DDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAAD 1164
Cdd:COG3206 280 AELSaryTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE 359
|
....*.
gi 568907995 1165 VEALQA 1170
Cdd:COG3206 360 VEVARE 365
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1025-1521 |
5.08e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1025 ERLKTSTSNVEQYR---AMVTSLEDSLNKEKQVTEEVHKNIEVR---LKESAEFQTQLEKKLMEVEKEKQELQDDKRkaI 1098
Cdd:COG5022 800 QPLLSLLGSRKEYRsylACIIKLQKTIKREKKLRETEEVEFSLKaevLIQKFGRSLKAKKRFSLLKKETIYLQSAQR--V 877
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1099 ESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQNKYERelMLHAADVEaLQAAKEQVSKM 1178
Cdd:COG5022 878 ELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKK--LLNNIDLE-EGPSIEYVKLP 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1179 TSIRQHLEETTQKAESQLLE--CKASWEERERVLK--DEVSKSVSRCEDLEKQNRLLHDQIEKLSDK--VVTSMKDAVQA 1252
Cdd:COG5022 955 ELNKLHEVESKLKETSEEYEdlLKKSTILVREGNKanSELKNFKKELAELSKQYGALQESTKQLKELpvEVAELQSASKI 1034
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1253 PLNVSLNEEGKSQEQILEILrfirREKEIAETRfevAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMA--Q 1330
Cdd:COG5022 1035 ISSESTELSILKPLQKLKGL----LLLENNQLQ---ARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTnrN 1107
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1331 HEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQAKVRKLELDILPLQE-------------------------ANAE 1385
Cdd:COG5022 1108 LVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGlfweanlealpspppfaalsekrlyQSAL 1187
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1386 LSEKSGMLQAEKKLLEEDVKR---------WKA-RNQQLI-----------------NQQKDPDTEEYR---KLLSE-KE 1434
Cdd:COG5022 1188 YDEKSKLSSSEVNDLKNELIAlfskifsgwPRGdKLKKLIsegwvpteystslkgfnNLNKKFDTPASMsneKLLSLlNS 1267
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1435 IHTKRI-QQLNEEVGRLKAeiarSNASLTNNQNLIQSLREDLSKARTeKEGIQKDLDAKIIDIQEKVKTITQVkkigrry 1513
Cdd:COG5022 1268 IDNLLSsYKLEEEVLPATI----NSLLQYINVGLFNALRTKASSLRW-KSATEVNYNSEELDDWCREFEISDV------- 1335
|
....*...
gi 568907995 1514 KTQFEELK 1521
Cdd:COG5022 1336 DEELEELI 1343
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
337-562 |
5.30e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 337 EAKEQQASMEEKFHNELNAHIKLSNLYKSAADDSEAKSNELTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEKEm 416
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 417 LEKIGKLEKELENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTElynAYVETQDQLLLEKQENKRINKY 496
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE---ELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568907995 497 LDEIVKEVEAKAPILKRQREEyerAQKAVASLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQR 562
Cdd:COG4942 176 LEALLAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| HOOK |
pfam05622 |
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from ... |
740-1195 |
5.53e-03 |
|
HOOK protein coiled-coil region; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organizms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas this central coiled-coil motif mediates homodimerization and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localized to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. This entry includes the central coiled-coiled domain and the divergent C-terminal domain.
Pssm-ID: 461694 [Multi-domain] Cd Length: 528 Bit Score: 41.98 E-value: 5.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 740 IEAKAALKQ----LQEIFENYKKEKiDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQdnvegyrREITS 815
Cdd:pfam05622 27 QEEKNSLQQenkkLQERLDQLESGD-DSGTPGGKKYLLLQKQLEQLQEENFRLETARDDYRIKCEELE-------KEVLE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 816 LQERNQKLTATTQKQEQIINTMtQDLRGANEKLAVAEVRAENLKKEKEML-------KLSEVRLS---QQRESLLAEQRG 885
Cdd:pfam05622 99 LQHRNEELTSLAEEAQALKDEM-DILRESSDKVKKLEATVETYKKKLEDLgdlrrqvKLLEERNAeymQRTLQLEEELKK 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 886 QNLLLTNLQT----IQGILERSETETKQRLNSQIE--KLEHEISHLKKKLENEVEQRHTLTRNLD----VQLldTKRQLD 955
Cdd:pfam05622 178 ANALRGQLETykrqVQELHGKLSEESKKADKLEFEykKLEEKLEALQKEKERLIIERDTLRETNEelrcAQL--QQAELS 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 956 TEINLHLNTKELLKNAQKDIATLK--------QHLNNMeaqlasqstQRTGQPG-DRDDVDDLKSQLRQAEEQVNDLKER 1026
Cdd:pfam05622 256 QADALLSPSSDPGDNLAAEIMPAEireklirlQHENKM---------LRLGQEGsYRERLTELQQLLEDANRRKNELETQ 326
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1027 LKTSTSNVEQYRAMVTSLEDSLNKEKQVTEEvhknievrlkesaefQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLS 1106
Cdd:pfam05622 327 NRLANQRILELQQQVEELQKALQEQGSKAED---------------SSLLKQKLEEHLEKLHEAQSELQKKKEQIEELEP 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1107 ELKKTLSTVQNEVQEALQRASTALSNEQQARRDCQEQAKIAVEAQnkyerELMLHAADVEALQAAKEQVSKMTSIRQHLE 1186
Cdd:pfam05622 392 KQDSNLAQKIDELQEALRKKDEDMKAMEERYKKYVEKAKSVIKTL-----DPKQNPASPPEIQALKNQLLEKDKKIEHLE 466
|
....*....
gi 568907995 1187 ETTQKAESQ 1195
Cdd:pfam05622 467 RDFEKSKLQ 475
|
|
| PLN02523 |
PLN02523 |
galacturonosyltransferase |
315-445 |
5.57e-03 |
|
galacturonosyltransferase
Pssm-ID: 215286 [Multi-domain] Cd Length: 559 Bit Score: 41.78 E-value: 5.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 315 NGLKTSNEHLQKHVEDLLT----------KLKEAKEQQASMEEKFHnelnahIKLSNLYKSAADDSEAKSNELTRAVDEL 384
Cdd:PLN02523 74 DPLKTRLDQIRKQADDHRTlvnayaayarKLKLDNSKLLRLFADLS------RNFTDLISKPSYRALLSSDGSAIDEDVL 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568907995 385 HKLLKEAGEANKTIQdhlLQVEESKDQMEKEMleKIGKLEKELENANDLLSATKRKGAILS 445
Cdd:PLN02523 148 RQFEKEVKERVKVAR---QMIAESKESFDNQL--KIQKLKDTIFAVNEQLTKAKKNGAFAS 203
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
85-228 |
5.68e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 85 RPELNKLPKSTQnKLEKFLAEQQSEIDCLKGRHEKFKVE---SEQQYFEIEKRLSQSQERL--VTETRECQNLRLELEKL 159
Cdd:COG1579 23 EHRLKELPAELA-ELEDELAALEARLEAAKTELEDLEKEikrLELEIEEVEARIKKYEEQLgnVRNNKEYEALQKEIESL 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568907995 160 NNQVKVLTEKTKEL----ETAQDRNLGIQSQFTRAKEELEAEKRDLIRTNERLSQEVEYLTEDVKRLNEKLKE 228
Cdd:COG1579 102 KRRISDLEDEILELmeriEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| 2A1904 |
TIGR00927 |
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying ... |
1897-2135 |
6.11e-03 |
|
K+-dependent Na+/Ca+ exchanger; [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 273344 [Multi-domain] Cd Length: 1096 Bit Score: 41.90 E-value: 6.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1897 KRTREEEEDSTMEAG--DQVSEDTVEMPlpkklkmvtpvGTEEEVMAEEStdgEAETQAYNQDSQDsiGEGVTQGDYTPM 1974
Cdd:TIGR00927 643 ERTGEEGERPTEAEGenGEESGGEAEQE-----------GETETKGENES---EGEIPAERKGEQE--GEGEIEAKEADH 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1975 EDSEETSQSLQIDLGPLQSD---QQTTSSQDGQGKGDDVIVIDSDDEDDDEENDGEHEDYEEDEDDDDDEEDDTG----- 2046
Cdd:TIGR00927 707 KGETEAEEVEHEGETEAEGTedeGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGeiqag 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 2047 -----MGDEGED---SNEGTGSADGNDGYEADDAEGGDGTDPGTETEESMGGAESHQRAADSQN--SGEGNTSAAESSFS 2116
Cdd:TIGR00927 787 edgemKGDEGAEgkvEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKgvDGGGGSDGGDSEEE 866
|
250
....*....|....*....
gi 568907995 2117 QEVAREQQPTSASERQTPQ 2135
Cdd:TIGR00927 867 EEEEEEEEEEEEEEEEEEE 885
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1049-1182 |
6.43e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 41.74 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1049 NKEKQVTEEVHKNIEVRLKESAEFQTQLEKKLMEVEKEKQELQDDKRKAIESMEQQLSELKKTLSTVQNEVQEALQRAST 1128
Cdd:PRK00409 505 EEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKK 584
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568907995 1129 ALSNEQQARRDCQEQAKIAVEAQNKYERELMLHAADVEALQAAKEQVSKMTSIR 1182
Cdd:PRK00409 585 EADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
220-414 |
6.87e-03 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 41.96 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 220 KRLNEKLKESNTTKGELqlkldelqaSDVAVKyREKRLEQEKELLHnqnswlntelktktdellalgreKGNEILELKCN 299
Cdd:TIGR01612 1987 QQLYEKIQASNELKDTL---------SDLKYK-KEKILNDVKLLLH-----------------------KFDELNKLSCD 2033
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 300 LENKkEEVLRLEEQmNGLKTSNEHLQKHVEDLLTKLkeakeQQASMEEKFHNELNAHIKLSNLYKSAAD---DSEAKSNE 376
Cdd:TIGR01612 2034 SQNY-DTILELSKQ-DKIKEKIDNYEKEKEKFGIDF-----DVKAMEEKFDNDIKDIEKFENNYKHSEKdnhDFSEEKDN 2106
|
170 180 190
....*....|....*....|....*....|....*...
gi 568907995 377 LTRAVDELHKLLKEAGEANKTIQDHLLQVEESKDQMEK 414
Cdd:TIGR01612 2107 IIQSKKKLKELTEAFNTEIKIIEDKIIEKNDLIDKLIE 2144
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
896-1138 |
7.60e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 7.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 896 IQGILERSETETKQRLNSQIEKLEHEISHLKKKLEN-EVEQRHTLTRNLDVQLLDTKRQLDTEINlhlNTKELLKNAQKD 974
Cdd:COG3206 158 AEAYLEQNLELRREEARKALEFLEEQLPELRKELEEaEAALEEFRQKNGLVDLSEEAKLLLQQLS---ELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 975 IATLKQHLNNMEAQLASQSTQRTGQPGDrDDVDDLKSQLRQAEEQVNDLKERLKTSTSNVEQYRAMVTSLEDSLNKEKQv 1054
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQS-PVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQ- 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1055 teevhknievrlkesaefqtqlekklmevekekqelqddkrKAIESMEQQLSELKKTLSTVQNEVQEALQRASTALSNEQ 1134
Cdd:COG3206 313 -----------------------------------------RILASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
....
gi 568907995 1135 QARR 1138
Cdd:COG3206 352 ELRR 355
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
113-834 |
7.88e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 113 LKGRHEKFKVESEQQYFEIEKRLSQSQERLVTETRECQNLRLELEKLNNQVKVLTEKTKELETAQDRNLGIQSQFTRAkE 192
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARI-E 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 193 ELEAEKRDLIRTNERLSQEVEYL-----TEDVKRLNEKLKESNTTKGELQLKLDELQASDVAVKYREKRLEQEKELLhnq 267
Cdd:TIGR00618 271 ELRAQEAVLEETQERINRARKAAplaahIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLL--- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 268 NSWLNTElktktdELLALGREKGNEILELKCNLENKKEEVLRLEEQMnglktsnEHLQKHVEDLLTKLKEAKEQQASMEE 347
Cdd:TIGR00618 348 QTLHSQE------IHIRDAHEVATSIREISCQQHTLTQHIHTLQQQK-------TTLTQKLQSLCKELDILQREQATIDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 348 KFHNELNAHIKLSNLYKSAaddseaksneltravdelhKLLKEAGEANKTIQDHLLQVEESKDQMEKEMLEKIGKLEKEL 427
Cdd:TIGR00618 415 RTSAFRDLQGQLAHAKKQQ-------------------ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQL 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 428 ENANDLLSATKRKGAILSEEELAAMSPTAAAVAKIVKPGMKLTELYNAYVETQ--DQLLLEKQENKRINKYLDEIVKEVE 505
Cdd:TIGR00618 476 QTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRrmQRGEQTYAQLETSEEDVYHQLTSER 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 506 AKAPILKRQREEYERAQKAVA----SLSAKLEQAMKEIQRLQEDTDKANKHSSVLERDNQRMEIQIKDLSQQIRVLLMEL 581
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTqcdnRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 582 EEARGNHVIRDEEVSSADISSSSEVISQHLVSYRNIEELQQQNQRLLFALRELgeTREREEQETTSSKIAELQHKLENSL 661
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSE--KEQLTYWKEMLAQCQTLLRELETHI 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 662 AELEQLRESRQHQMQLVDSIVRQRDmyrILLSQTTGMAIPLQASSL------DDISLLSTPKRSSTSQTVSTPAPEPVID 735
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAARE---DALNQSLKELMHQARTVLkarteaHFNNNEEVTAALQTGAELSHLAAEIQFF 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 736 STEAIEAKAALKQLQEIFENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITS 815
Cdd:TIGR00618 791 NRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
730
....*....|....*....
gi 568907995 816 LQERNQKLTATTQKQEQII 834
Cdd:TIGR00618 871 IIQLSDKLNGINQIKIQFD 889
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1546-1691 |
8.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 8.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1546 QEMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLR-----QDLQDKTTEEQLRQQMNEK 1620
Cdd:COG1579 31 AELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRnnkeyEALQKEIESLKRRISDLED 110
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568907995 1621 ----TWKTLALAKSKITHLSGVKDQLTKEIEELKQRngaLDQQKDELDVRMTALKSQYEGRISRLERELREHQER 1691
Cdd:COG1579 111 eileLMERIEELEEELAELEAELAELEAELEEKKAE---LDEELAELEAELEELEAEREELAAKIPPELLALYER 182
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1210-1420 |
9.05e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1210 LKDEVSKSVSRCEDLEKQNRLLHDQIEKLSDKVVTSMK--DAVQAPLNVSLNEEGKSQEQILEIlrfirrEKEIAETRFE 1287
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARriRALEQELAALEAELAELEKEIAEL------RAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1288 VAQVESLRYRQRVELLERELQELQDSLNVEREKVQVTAKTMAQHEELMKKTETMNVVMETNKMLREEKERLEQNLQQMQA 1367
Cdd:COG4942 106 LAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568907995 1368 KVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDVKRWKARNQQLINQQKD 1420
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1698-1994 |
9.16e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 41.46 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1698 EPQEPTNKAPEQQRQITLKTTPASGERgiASTSDPPTANIKPTPVVSTPSKVTAAAMAGNKSTPRASIRPMVTPATVTNP 1777
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLP--PPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1778 TTTPTATV-MPTTQVESQEAMQSEGPVEHVPvfgNASGSVRSTSPNVQPSISQPILTVQQQTQATAfvQPTQQSHPQIEP 1856
Cdd:PHA03247 2881 PPVRRLARpAVSRSTESFALPPDQPERPPQP---QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPL--APTTDPAGAGEP 2955
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1857 T-------NQELSPNIVEVVQS-SPVERPSTStavfgtvsaTPSSSLPKRTREEEEDSTMEAGD-QVSEDTVEMPLPKKL 1927
Cdd:PHA03247 2956 SgavpqpwLGALVPGRVAVPRFrVPQPAPSRE---------APASSTPPLTGHSLSRVSSWASSlALHEETDPPPVSLKQ 3026
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568907995 1928 KMVTPVGTEE--EVMAEESTDGEAETQAYNQDSQDSIGEGVTQGDYTPMEDSEETSQSLQIDLGPLQSD 1994
Cdd:PHA03247 3027 TLWPPDDTEDsdADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPLSAN 3095
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
749-969 |
9.37e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 749 LQEIFENYKKEKIDSEKLQNEQLEKLQEQVTDLRSQNTKISTQLDFASKRYEMLQDNVEGYRREITSLQERNQKLTATTQ 828
Cdd:PHA02562 193 IQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIE 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 829 KQEQIIN---------TMTQDLRGANEKLAVAEVRAENLKKEKEMLKLSEVRLSQQRESLLAEQRGQNLLLTNLQTIQGI 899
Cdd:PHA02562 273 QFQKVIKmyekggvcpTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS 352
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 900 LersetetkQRLNSQIEKLEHEISHLKKKLENEVEQRHTLTRNLDvQLLDTKRQLDTEINLHLNTKELLK 969
Cdd:PHA02562 353 L--------ITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD-KIVKTKSELVKEKYHRGIVTDLLK 413
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
206-394 |
9.49e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 9.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 206 ERLSQEVEYLTEDVKRLNEKLKESNTTKGELQ------LKLDELQASDVAVKYREKRLEQ-EKELlhnqnswlnTELKTK 278
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQerrealQRLAEYSWDEIDVASAEREIAElEAEL---------ERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 279 TDELLALGREkgneilelkcnLENKKEEVLRLEEQMNGLKTSNEHLQKHVEDLLTKLKEAKEQQASMEEKFHNELNAHik 358
Cdd:COG4913 684 SDDLAALEEQ-----------LEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRAL-- 750
|
170 180 190
....*....|....*....|....*....|....*...
gi 568907995 359 LSNLYKSAADD--SEAKSNELTRAVDELHKLLKEAGEA 394
Cdd:COG4913 751 LEERFAAALGDavERELRENLEERIDALRARLNRAEEE 788
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
1468-1576 |
9.56e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 40.82 E-value: 9.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1468 IQSLREDLS--KARTEKEGIQKDLDaKIIDIQEKVKTItqvkkigrryKTQFEELKAQQNKAMETSTQSSGDHQEQHISV 1545
Cdd:PRK05431 4 IKLIRENPEavKEALAKRGFPLDVD-ELLELDEERREL----------QTELEELQAERNALSKEIGQAKRKGEDAEALI 72
|
90 100 110
....*....|....*....|....*....|.
gi 568907995 1546 QEMQELKDTLSQSETKTKSLEGQVENLQKTL 1576
Cdd:PRK05431 73 AEVKELKEEIKALEAELDELEAELEELLLRI 103
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
967-1235 |
9.81e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.19 E-value: 9.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 967 LLKNAQKDIATLKQHLNNMEAqlasqstqrTGQPGDRDDVDDLKSQLRQAEEQvndlkerlKTSTSNVEQYRAMVTSLEd 1046
Cdd:PRK10929 17 AYAATAPDEKQITQELEQAKA---------AKTPAQAEIVEALQSALNWLEER--------KGSLERAKQYQQVIDNFP- 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1047 SLNKE--KQVTEEVHKNIEVRLKESA---EFQT-QLEKKLMEVEKEKQELQDDKRKAIESME---QQLSELKKTLSTVQN 1117
Cdd:PRK10929 79 KLSAElrQQLNNERDEPRSVPPNMSTdalEQEIlQVSSQLLEKSRQAQQEQDRAREISDSLSqlpQQQTEARRQLNEIER 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1118 EVQeALQRASTALSNEQQARRDCQEQAKIAV---------EAQNKYERELM---LHAADVEALQAAKEQV-SKMTSIRQH 1184
Cdd:PRK10929 159 RLQ-TLGTPNTPLAQAQLTALQAESAALKALvdelelaqlSANNRQELARLrseLAKKRSQQLDAYLQALrNQLNSQRQR 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 568907995 1185 -----LEETTQKAES--QLLECKASWEERERVLKDEVSKSVSRCEDLEKQNRLLHDQI 1235
Cdd:PRK10929 238 eaeraLESTELLAEQsgDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQT 295
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
1547-1663 |
9.82e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 1547 EMQELKDTLSQSETKTKSLEGQVENLQKTLSEKETEARSLQEQTVQLQSELSRLRQDLQDKTTEEQLRQQMNEKTWKTLA 1626
Cdd:PRK09039 61 QIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568907995 1627 LAKSKITHL-------------SGVKDQLTK-EIEELKQR-NGALDQQKDEL 1663
Cdd:PRK09039 141 LLNQQIAALrrqlaaleaaldaSEKRDRESQaKIADLGRRlNVALAQRVQEL 192
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
121-349 |
9.94e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.07 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 121 KVESEQQYFEIEKRLSQSQERLVTETREcQNLRLELEKLNNQVKVLTEKTKELETaqdrnlgiqsqftrAKEELEAEKRD 200
Cdd:PRK05771 61 KLRSYLPKLNPLREEKKKVSVKSLEELI-KDVEEELEKIEKEIKELEEEISELEN--------------EIKELEQEIER 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 201 LI------------RTNERLSQEVEYLTEDVKRL------NEKLKESNTTKGELQLkldelqasdVAVKYREKRLEQEKE 262
Cdd:PRK05771 126 LEpwgnfdldlsllLGFKYVSVFVGTVPEDKLEElklesdVENVEYISTDKGYVYV---------VVVVLKELSDEVEEE 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568907995 263 LLHNQNSWLNTELKTKTDELLalgrekgNEILELKCNLENKKEEvlrLEEQMNGLKTSNEHLQKHVEDLLtklkEAKEQQ 342
Cdd:PRK05771 197 LKKLGFERLELEEEGTPSELI-------REIKEELEEIEKERES---LLEELKELAKKYLEELLALYEYL----EIELER 262
|
....*..
gi 568907995 343 ASMEEKF 349
Cdd:PRK05771 263 AEALSKF 269
|
|
| |
